mRNA_Ecto-sp13_S_contig87067.20171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87067.20171.1
Unique NamemRNA_Ecto-sp13_S_contig87067.20171.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: A0A6H5LA73_9PHAE (Cob_adeno_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA73_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.960e-32
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVAR+++
Sbjct:   16 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARYIN 73          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: D8LH13_ECTSI (Flagellar associated protein, cobalamin adenosyltransferase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH13_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.230e-30
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVAR+++
Sbjct:  177 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARYIN 234          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: A0A835Z3S8_9STRA (Cob(I)alamin adenosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.320e-16
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDELD++ PPLKTFI+P GGLAA HLHLAR VCRRAERS  PL+  G+   EV R+++
Sbjct:  155 IDELDSKLPPLKTFILPSGGLAAVHLHLARVVCRRAERSAIPLVEAGEVDPEVGRYLN 212          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: A0A835Z8K8_9STRA (Cobalamin adenosyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8K8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.760e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDELD++ P LKTFI+P GGLAA+HLH+AR VCRRAER++ PLL  G    EV R+++
Sbjct:  162 IDELDSKLPKLKTFILPSGGLAATHLHIARVVCRRAERTVVPLLEAGHVDPEVGRYIN 219          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: A0A6A4DPT8_9STRA (Cob_adeno_trans domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DPT8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.930e-14
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVP-GGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDE+DA+ PPLK FI+P GGGLA++HLH+AR VCRRAERS+ PL+  G     V R+++
Sbjct:  127 IDEMDAQLPPLKCFILPSGGGLASTHLHVARAVCRRAERSVVPLVAAGDVDGVVQRYLN 185          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: J9ITS3_9SPIT (Cob_adeno_trans domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9ITS3_9SPIT)

HSP 1 Score: 69.7 bits (169), Expect = 2.390e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            ID +DA+ PPLK FI+P GGLAASH+H+AR VCRRAER+L PL    Q  ++  ++++
Sbjct:   85 IDFMDAQLPPLKNFILPSGGLAASHIHIARTVCRRAERNLIPLYQEEQIEQQAYQYIN 142          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: A0A3M1KQX8_9DELT (Corrinoid adenosyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1KQX8_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 4.610e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDEL A   PLK+F++PGGG A + LHLARCVCRRAERS+  L+ +G+   + AR+++
Sbjct:  111 IDELTAELKPLKSFVLPGGGPAGAALHLARCVCRRAERSVVGLVRSGRASADTARYLN 168          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: K3WV80_GLOUD (Cob_adeno_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV80_GLOUD)

HSP 1 Score: 69.3 bits (168), Expect = 4.760e-13
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVP-GGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDE+DA  PPLK FI+P GGGLA++HLH+AR VCRRAER + PL   G     V R+++
Sbjct:  104 IDEMDASLPPLKNFILPSGGGLASTHLHVARAVCRRAERRVVPLSNAGDVDASVMRYLN 162          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: A0A662WEE6_9STRA (Cob_adeno_trans domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEE6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.100e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVP-GGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            IDE+D   PPLK FI+P GGGLA++HLH+AR VCRRAERS+ PL+  G     V R+++
Sbjct:  129 IDEMDLELPPLKCFILPSGGGLASTHLHVARAVCRRAERSVVPLVAAGDVEGVVQRYLN 187          
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Match: A0A2P4YRB9_9STRA (ATP:cob(I)alamin adenosyltransferase (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=A0A2P4YRB9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.460e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 IDELDARTPPLKTFIVP-GGGLAASHLHLARCVCRRAERSLQPLLGTGQGVEEVARWVS 174
            ID +DA  PPLK FI+P GGGLA++HLH+AR VCRRAERS+ PL+  G     V R+++
Sbjct:  104 IDAMDAELPPLKCFILPSGGGLASTHLHVARAVCRRAERSVVPLVAAGDVDGVVQRYLN 162          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87067.20171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LA73_9PHAE1.960e-3294.83Cob_adeno_trans domain-containing protein n=1 Tax=... [more]
D8LH13_ECTSI1.230e-3094.83Flagellar associated protein, cobalamin adenosyltr... [more]
A0A835Z3S8_9STRA1.320e-1665.52Cob(I)alamin adenosyltransferase n=1 Tax=Tribonema... [more]
A0A835Z8K8_9STRA5.760e-1662.07Cobalamin adenosyltransferase-domain-containing pr... [more]
A0A6A4DPT8_9STRA8.930e-1459.32Cob_adeno_trans domain-containing protein n=4 Tax=... [more]
J9ITS3_9SPIT2.390e-1355.17Cob_adeno_trans domain-containing protein n=1 Tax=... [more]
A0A3M1KQX8_9DELT4.610e-1355.17Corrinoid adenosyltransferase n=1 Tax=Deltaproteob... [more]
K3WV80_GLOUD4.760e-1357.63Cob_adeno_trans domain-containing protein n=1 Tax=... [more]
A0A662WEE6_9STRA5.100e-1357.63Cob_adeno_trans domain-containing protein n=2 Tax=... [more]
A0A2P4YRB9_9STRA5.460e-1357.63ATP:cob(I)alamin adenosyltransferase (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87067contigEcto-sp13_S_contig87067:389..562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score117.5
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog2880.D8LH13
Model size174
KEGG rclassRC00533
KEGG koko:K00798
KEGG ReactionR01492,R05220,R07268
KEGG Pathwayko00860,ko01100,map00860,map01100
KEGG ModuleM00122
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.cob(I)yrinic acid a,c-diamide adenosyltransferase activity
EggNOG OGs2QS64@2759,COG2096@1
Ec32 ortholog descriptionflagellar associated protein, cobalamin adenosyltransferase-like protein
Ec32 orthologEc-06_010830.1
EC2.5.1.17
Cds size174
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.5916483-CDS-Ecto-sp13_S_contig87067:388..5621681464143.5916483-CDS-Ecto-sp13_S_contig87067:388..562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87067 389..562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87067.20171.1prot_Ecto-sp13_S_contig87067.20171.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87067 389..562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87067.20171.1

>prot_Ecto-sp13_S_contig87067.20171.1 ID=prot_Ecto-sp13_S_contig87067.20171.1|Name=mRNA_Ecto-sp13_S_contig87067.20171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
IDELDARTPPLKTFIVPGGGLAASHLHLARCVCRRAERSLQPLLGTGQGV
EEVARWVS
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mRNA from alignment at Ecto-sp13_S_contig87067:389..562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87067.20171.1 ID=mRNA_Ecto-sp13_S_contig87067.20171.1|Name=mRNA_Ecto-sp13_S_contig87067.20171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87067:389..562+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGACGAGTTAGATGCGAGAACGCCTCCTCTGAAGACTTTCATCGTCCC TGGGGGGGGTCTGGCAGCGTCACACTTGCACCTGGCCCGGTGCGTGTGCC GGCGCGCCGAGCGGAGCCTTCAGCCCCTGCTGGGAACGGGCCAGGGTGTC GAAGAAGTAGCCAGGTGGGTTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87067:389..562+

>mRNA_Ecto-sp13_S_contig87067.20171.1 ID=mRNA_Ecto-sp13_S_contig87067.20171.1|Name=mRNA_Ecto-sp13_S_contig87067.20171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87067:389..562+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGACGAGTTAGATGCGAGAACGCCTCCTCTGAAGACTTTCATCGTCCC
TGGGGGGGGTCTGGCAGCGTCACACTTGCACCTGGCCCGGTGCGTGTGCC
GGCGCGCCGAGCGGAGCCTTCAGCCCCTGCTGGGAACGGGCCAGGGTGTC
GAAGAAGTAGCCAGGTGGGTTTCT
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