mRNA_Ecto-sp13_S_contig8704.20168.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8704.20168.1
Unique NamemRNA_Ecto-sp13_S_contig8704.20168.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D7FMR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR8_ECTSI)

HSP 1 Score: 488 bits (1255), Expect = 7.280e-171
Identity = 244/292 (83.56%), Postives = 259/292 (88.70%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLLING 876
            SHIRGAMVSMMT ATASRRH  PC++PAPG    IGTGDG GT LG TQLPMDPSTCIFWC VALGALVKG+PLESVA+YFR A VSLDS TGPANPE+A+AWTILGYLYGFMGDM+KFEEYLGFAD+F TASINEGSADTLPAGFAEIVH KDTVK+CSDNLDPADMESFCARHRDAP+          IC+AVND ELYRY+TQSFKVFQQV Y+KA   SASRRRLSDD+CRAEGGEGVSAK  GPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGL+ING
Sbjct:    6 SHIRGAMVSMMTRATASRRHHSPCETPAPGRLDAIGTGDGIGTFLGGTQLPMDPSTCIFWCAVALGALVKGNPLESVASYFRWARVSLDSYTGPANPEVAKAWTILGYLYGFMGDMAKFEEYLGFADSFLTASINEGSADTLPAGFAEIVHRKDTVKVCSDNLDPADMESFCARHRDAPR----------ICEAVNDGELYRYVTQSFKVFQQVAYAKACAKSASRRRLSDDQCRAEGGEGVSAKDCGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLIING 287          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 2.070e-75
Identity = 143/293 (48.81%), Postives = 184/293 (62.80%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPY-GIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDK-CRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLLIN 873
            SHIRG MV MMT +TA  +     DSP   C +  I T DG   +   +QL   PS C FWC V +GALV GSP+E V NY  LA  +L++ TGP N E+A+AW ILGY YGFMGD + F+EYLG +D+F T SI  GS D LPAGFAEI+ HK TVK+ + NLD A ++   AR RD PQ             A  +++++RY+TQS   F+Q+V+ K    SA+ R LSDD+ C  +GG G S   N P  ++V DAM TGLR  +I+F+ L+E  +R  IR G+GGLLIN
Sbjct:  134 SHIRGEMVRMMTLSTAPHQLGASYDSPEQ-CQFDAILTEDG---ITTGSQLSTGPSACTFWCAVGVGALVNGSPVELVGNYSGLARDALNAYTGPVNAEVAKAWAILGYFYGFMGDTTTFQEYLGLSDSFLTDSIERGSTDILPAGFAEIIRHKQTVKVYAGNLDAAYIDFLGARRRDPPQANP----------AATELDVFRYVTQSHTAFEQLVFEKVCENSATIRPLSDDEPCEDDGGCG-SPHGNPPQAEEVSDAMVTGLRDGLIDFEHLQEAVDRSNIRQGIGGLLIN 411          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 6.760e-75
Identity = 141/291 (48.45%), Postives = 179/291 (61.51%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLLIN 873
            SHIRG MV MMT +TA  R     DS   G    I + DG   +    QL   PS C FWC V +GALVKGSP+ESVANY RLA  +LD+ TGP N E+A AW ILGY YGFMGD + F+EYLG AD+F T SI  GS + LPAGFAEI+  + TVK+ + +LD A ++   +R  D PQV            A N+ +L+RY +QS   F+++V+ KA   S+ RR LSDD+   E   G S     P  +DV DAM  GL+  +I+F+ L+ET +R  IR G+GGLLIN
Sbjct:   61 SHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDG---ITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTGPVNAEVAMAWAILGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTNILPAGFAEIIRLEQTVKVYTGHLDAAYIDFLGSRRGDPPQVNP----------AANEGDLFRYFSQSLNAFEELVFEKACEKSSIRRHLSDDEPWEEDRGGGSPHGAAPQAEDVSDAMVMGLQDGLIDFEHLQETVDRSNIRKGIGGLLIN 338          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D8LU25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU25_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 3.200e-71
Identity = 136/291 (46.74%), Postives = 171/291 (58.76%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLLIN 873
            SHIRG MV MMT +TA  R     DS   G    I + DG   +    QL   PS C FWC V +GALVKGSP+ESVANY RLA  +LD+ TGP N E+A+AW I GY YGFMGD + F+EYLG AD+F T SI  GS D LPAGFAEI+  K TVK+ + NLD A ++   +R R+ PQV            A N+ +LYRY  Q+   F+++V+ KA                 E   G S+    P  +DV DAM T L+  +I+F  L+ET +RP IR G+GGLL+N
Sbjct:   61 SHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDG---ITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTGPVNAEVAKAWAISGYFYGFMGDTATFQEYLGLADSFLTDSIERGSTDILPAGFAEIIRLKQTVKVYAGNLDAAYIDFLGSRRREPPQVNP----------AANEGDLYRYFCQASAAFEELVFEKAXXXXXXXXXXXXXXXXXEDRGGGSSHGADPQAEDVSDAMVTALKDGLIDFGHLQETVDRPNIRKGIGGLLMN 338          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D8LU19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU19_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 2.840e-67
Identity = 125/291 (42.96%), Postives = 173/291 (59.45%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLLIN 873
            SHIRG MV MMT  T  ++     DS   G    I + DG   +    QL   PS C FWC V +GA++KGSP+ESVANY RLA  +LD+  GP N E+A+AW ILGY +G MGDM+ + EYL  + +F   SI +GS D LPAGFAEI+  KD V++ S +LD   +ES  A+ +DAPQ+            A  + +LYRY+ QS   F+Q V+ +A   +A+RR+  +++   +   G     N P  ++V   M   L+  +I+F+ L+E A+RP IR G+GGLLIN
Sbjct:   42 SHIRGVMVKMMTGPTVQQQLGALHDSLEQGQFGAIFSEDG---ITTGNQLLTGPSCCTFWCAVGVGAVLKGSPVESVANYSRLARDALDAYKGPVNAEVAKAWAILGYFHGSMGDMANYVEYLKLSGSFLMDSIEQGSTDMLPAGFAEIIRQKDNVQVYSGHLDATGIESLVAQRQDAPQIKP----------AACEGDLYRYVAQSLTAFEQDVFERACENTATRRQSRENEACEDNRSGAIPHDNAPQAEEVSAIMVAALKDGLIDFEHLQEIADRPNIRTGIGGLLIN 319          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 4.110e-67
Identity = 127/291 (43.64%), Postives = 172/291 (59.11%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLLIN 873
            SHIRGAMV MM  +TA  +     +SP         T DG   +    QL   PS C FWC V +GAL KGSP+ESVANY RLA  ++D+ TGP + ++A AW ILGY YGFMGD + FEEYL  +D+F  ASI +GS  TLP+GF EIVH+K+ VK+   N+D  D  SF  RH+D PQ+            A  + +++R++ QS + F Q+V  +A G  A+R   SDD    E     S   N P  +++ DAM TG +  +++F+ L+E  + P +R G+GG LIN
Sbjct:  134 SHIRGAMVRMMARSTAQHQPGARHNSPEQSQFGDTFTEDG---ITPGNQLLTGPSCCTFWCAVGMGALAKGSPVESVANYSRLARDAMDAYTGPVDADVAEAWAILGYFYGFMGDTATFEEYLKLSDSFLIASIEQGSTGTLPSGFPEIVHYKECVKVFCGNVDAVDTGSF-TRHQDRPQINP----------AATEEDVFRFVAQSVEAFVQLVVEEACGKRATRSCSSDDGPYEEDRGDASPHGNAPRVEEISDAMVTGFKIGLLDFENLQEAVDLPNVRTGMGGFLIN 410          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D8LU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU22_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 6.300e-66
Identity = 124/290 (42.76%), Postives = 172/290 (59.31%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSD-DKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLL 867
            SHIRG M+ MM H+ A  +     DSP  G    I T DG   +    QL   PS C FWC V +GALVKGSP+ESVANY RLA  +LD+ TGP + E+A+AW ILGY YGFMGD  +F EYL  + +F  ASI +GS D LPAGFAEIV +++ V + S  +D AD++S  AR + +PQ+           + V + +++ Y+ QS   F + V + A   SA+RR  +D D C A+   G S   N P  ++V +AM TG +  +I+F+ L++ A+R  +  G+   L
Sbjct:   23 SHIRGTMMRMMAHSAAQYQPGARHDSPDQGQFGAIFTEDG---ITTGNQLSTGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTGPVDAEVAKAWAILGYFYGFMGDTVQFLEYLKLSGSFLVASIEQGSTDVLPAGFAEIVQYREAVMVYSGIVDAADIDSLAARSQHSPQIN----------RVVTEEDIFPYVAQSLTAFDRRVITMARKKSATRRHSTDGDPCEADV-SGSSLHGNAPRAEEVSEAMVTGFKDGLIDFEHLQDAADRSHVAHGILAAL 298          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 2.990e-65
Identity = 119/277 (42.96%), Postives = 164/277 (59.21%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETAN 831
            SH+RGAMV MM H+ A  + +   D+P  G    I + DG   +    QL   PS C FWC V +GALVKG P ESV  Y RLA  +LD+ TGP + E+A+AW IL YLYG+MGD +KFEEYL  +D+F  ASI +GS D LPAGFAE+V+HK TVK+ + N D  D++S  AR +D P++            A ++ +++RY+ QS   F Q+ + KA    A   + SDD+   E     S   N P  ++V  AM  G +  ++EF+ L+ET +
Sbjct:  131 SHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDG---ITTGNQLSTGPSACTFWCAVGVGALVKGRPAESVTIYSRLARGALDAYTGPVDAEVAKAWAILAYLYGYMGDTAKFEEYLELSDSFLIASIEQGSTDMLPAGFAEMVNHKQTVKVYAGNPDATDIDSLAARRQDPPKITP----------AASERDVFRYVVQSLAAFDQMAFEKACKNRAPCGQSSDDEPYLENRGDGSPHGNAPPVEEVAHAMVAGFKDDLVEFEHLQETVD 394          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 3.840e-60
Identity = 105/180 (58.33%), Postives = 122/180 (67.78%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQ 540
            SHIRGAMV MMT +T   +   P DSPA G    I T DG   +    QL   PS C FWC V LGALVKGSP+ESV NY RLA  +LD+ TGP + E+A+AW ILGYLYGFMGD  KFEEYL  +D+F TA+I +GS D LPAGFAEIV+HK TVK+ S N  P D+E   AR +  PQ
Sbjct:   61 SHIRGAMVRMMTSSTPHHQPGAPHDSPAQGHFGSIFTEDG---ITPGNQLSTGPSACTFWCAVGLGALVKGSPVESVVNYSRLARDALDAYTGPVDAEVAKAWAILGYLYGFMGDTGKFEEYLELSDSFLTAAIEQGSTDMLPAGFAEIVNHKQTVKVYSGNAGPTDIEPLGARRQHPPQ 237          
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Match: D7FH82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 6.880e-55
Identity = 113/297 (38.05%), Postives = 166/297 (55.89%), Query Frame = 1
Query:    1 SHIRGAMVSMMTHATASRR----HQCPCDSPAPGCPYGIGTGDGNGTL-LGETQLPMDPSTCIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTILGYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTVKMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQSFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLLING 876
            SHIR  MV MM   T S++      C  D         +   +G+  +   E QL    STC FWC VALGALVKG P+ SVA Y  LA  +++S +GP    +A+AW IL +LY F GD   F+EY+  ++AFF+AS   GS + LP G+AE+V H+ TV+M S N   +++ESFC + +D PQ+            A ++ ELY ++ Q+++ F+Q VY  A+  S+    L  +    E G    +         V+D MA+ +  +  +F++LE+ A+RP IR G+GGL+ING
Sbjct:   23 SHIRETMVKMMVSPTLSQKPVFWRDCDEDD--------VLAREGDFRMPSAENQLDAGSSTCTFWCAVALGALVKGGPVTSVARYSELARDAVESYSGPVTTGVAKAWVILAFLYLFHGDTDMFQEYMARSEAFFSASGAYGSTEVLPVGYAEVVSHRMTVRMFSGNASTSEVESFCRQPQDPPQLKA----------AASETELYAFMMQAYREFEQAVYRTAYLESSDAGGLPSEN---EAGIRTCSSRVREASMAVVDTMASRISNHSCDFERLEDVADRPLIRQGIGGLIING 298          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8704.20168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMR8_ECTSI7.280e-17183.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ1_9PHAE2.070e-7548.81Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU24_ECTSI6.760e-7548.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU25_ECTSI3.200e-7146.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU19_ECTSI2.840e-6742.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8E7_9PHAE4.110e-6743.64Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU22_ECTSI6.300e-6642.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU27_ECTSI2.990e-6542.96Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU29_ECTSI3.840e-6058.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH82_ECTSI6.880e-5538.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8704contigEcto-sp13_S_contig8704:209..4697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size879
Hectar predicted targeting categoryother localisation
Exons7
Cds size861
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8704.20168.1prot_Ecto-sp13_S_contig8704.20168.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8704 209..4679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.4043336-CDS-Ecto-sp13_S_contig8704:208..2541681464143.4043336-CDS-Ecto-sp13_S_contig8704:208..254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8704 209..254 -
1681464143.4169164-CDS-Ecto-sp13_S_contig8704:508..7991681464143.4169164-CDS-Ecto-sp13_S_contig8704:508..799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8704 509..799 -
1681464143.4289746-CDS-Ecto-sp13_S_contig8704:1410..15201681464143.4289746-CDS-Ecto-sp13_S_contig8704:1410..1520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8704 1411..1520 -
1681464143.4418745-CDS-Ecto-sp13_S_contig8704:2641..27251681464143.4418745-CDS-Ecto-sp13_S_contig8704:2641..2725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8704 2642..2725 -
1681464143.4510567-CDS-Ecto-sp13_S_contig8704:3632..36781681464143.4510567-CDS-Ecto-sp13_S_contig8704:3632..3678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8704 3633..3678 -
1681464143.460479-CDS-Ecto-sp13_S_contig8704:3862..39361681464143.460479-CDS-Ecto-sp13_S_contig8704:3862..3936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8704 3863..3936 -
1681464143.46983-CDS-Ecto-sp13_S_contig8704:4469..46791681464143.46983-CDS-Ecto-sp13_S_contig8704:4469..4679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8704 4470..4679 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.4790814-UTR-Ecto-sp13_S_contig8704:4679..46971681464143.4790814-UTR-Ecto-sp13_S_contig8704:4679..4697Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8704 4680..4697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8704.20168.1

>prot_Ecto-sp13_S_contig8704.20168.1 ID=prot_Ecto-sp13_S_contig8704.20168.1|Name=mRNA_Ecto-sp13_S_contig8704.20168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
MVSMMTHATASRRHQCPCDSPAPGCPYGIGTGDGNGTLLGETQLPMDPST
CIFWCTVALGALVKGSPLESVANYFRLASVSLDSNTGPANPELARAWTIL
GYLYGFMGDMSKFEEYLGFADAFFTASINEGSADTLPAGFAEIVHHKDTV
KMCSDNLDPADMESFCARHRDAPQVATLLLVSIYICKAVNDVELYRYLTQ
SFKVFQQVVYSKAWGTSASRRRLSDDKCRAEGGEGVSAKINGPLEDDVLD
AMATGLRGYVIEFDQLEETANRPRIRAGVGGLLING*
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mRNA from alignment at Ecto-sp13_S_contig8704:209..4697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8704.20168.1 ID=mRNA_Ecto-sp13_S_contig8704.20168.1|Name=mRNA_Ecto-sp13_S_contig8704.20168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8704:209..4697- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCACATCCGCGGGGCGATGGTATCGATGATGACCCACGCCACTGCCTC ACGGCGGCATCAGTGTCCGTGTGACTCCCCCGCGCCTGGATGTCCTTATG GCATCGGCACGGGGGACGGAAACGGCACTCTCCTTGGAGAGACTCAGCTT CCCATGGACCCGTCCACTTGCATATTTTGGTGTACAGTTGCCCTGGGGGC TCTTGTGAAGGGCAGCCCTCTTGAATCGGTGAGATTTGGACAAGTAAGAT GTGTTGCCTACCCTATCTGCGCAAGAAGCACAGGCACCCCCGCCGGCAAA AAATGGTCAAGCACCCTCAAGGCAGTTACACGGTGCTTACAACTGTCTCT GGAAGTAAAGCACCAGAAAATAAATTCAGTCAAACGCAGCTGTCATCCGT TTGCAAGGAATTAAGTACAACATGCCGAACATCCTTAGCAGGATGCAGCG CACGCTTCATGCGACTCGCCGAATACTTCACGGCGCTTCGCGCTTGGTGA TGTGAGAGCCTGGTTCGGTGAGAATCCGGCATGCTCCGTCCCGGCTTTGT AGGAACGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGT ACACCCCCCCTCCACGCATTGCCGGTGCTGCTGCCCTCCCAATGCGGCAT CACCGCTGATTGATTCTCGCGGCCAGTTAGAGCTACATAGCTATCCGGTT GAGATATGCATACGTCACTCACAAATACACCACGTCCTCCCCATAATGTG TGACGCACAAGGTGGCGAACTACTTTCGATTGGCGAGCGTCTCGCTAGAT TCCAACACTGGCCCTGCGAACCCCGAGCTTGCAAGGTGAGTCGCAACGAA AAGCAGCACACCCTGCATTTGTAGATACCCAGGAGCGGGATTGCACACCG ACGACCGAAATTACCTTGTGGGCCTGGTCAGATCGCCACGATGGCTTACC ATCATCACGAACATGACACTTACAGCACAAACCCATCATCCCCTTTTCCC CGCCGCAACGTCGACTTAGGGCATGGACGATCCTGGGATACCTATACGGC TTCATGGGAGACATGGTGAGCTCGATTCCTACGGCGGGTACGGCACTGAT GCGAACTTCGCTTGACTCATGCACACATCAAGTACCTCCTCTCACTCGCC AGTAGAGTCGACACGCGTGTTACGGCCAGCACAGGAGGCTTCCCTCCCCC CCACGCCTGTAAGTGTCCGATGGCGCATAGCCCCCCGTTGCATTTCCCCC CTCTTATTGGATAATGTAGCAGTTCCTCAACCGTTGTCCCTGTAAATTTG ATCTCGACCTCCTTCTACCGCTTTTTGTGCTATCCGCAACAACTTCACAA CCTCGAAGCGATGTGTTGGGTCCTCTCTCCGCCTAGGCGTGCGCGCCGAA GTTCTAACAGCTTGTTTTCTGGAAACAAATGTGGAGATAAAATTATTCTC AATAACGATTCACTTTCCAAATGTTTGAAGGCAGGCTGTTCGGTGCGCTA CTGCGATTGGTGAGATGGCACGACCGCCTTGGCGCGGACACAGTGATCCT GGGACCTTCTGCCTCTAACTAAAACCTCTATTGGGAGGACATGGCGTGTG CCCGTTTCAAAACAAGAAGCGAAGGCCTATAAATTTCGTGCACATGCAGA GAACAAACATTTTTTGGTTTGCTGCTGTTTGCGAGTTGCAATTTGTGTGG GGTACGTAGCGGTGACAAAGGTCTTGATCTATCGCATGTCAGCTTCAGGC AAACCGAGGTGTCACGAAAAAATCAGTCCTCGCAAAAGCACCAAGTCCTT CAAAACGGGCTTTTTTCTTTTTGAACGACTTTTCCCTGACGTGCGAGCTC CCTGCTGCAGTTTTTCTGCGCCAACTGTTCTCGTCTGAAAATGGAGAATG GCCCGTAGGCTGTGAACAGCACCAATTCACAACAATTGCCTCTCTTCGCT TGTGTGTCTGGCTGCGCCCCAGTCGAAGTTTGAAGAATACCTGGGATTTG CGGATGCCTTCTTCACGGCTTCCATCAATGAAGGGTCGGCTGACACACTG CCAGCGGTGAGTGTAAGCTCACTTCAAATACGAGTAGTTAAGGCGAGTAC CTGTGACAGACGTCAACTTAACAGAGGCGCCTCAGGAAACCGGTTCTTTG CAACCATCGACCGCCATCCCTTTAGGGAAGGTCGATCACCATTGTTTCTG CATGTCACCAGCACCAGCGTAACTGCAACACCACCGTGGGATGAATGGCC CGGCAACACCGATCGAGCCAGTCACAACCATGGCCTCCCCTATTTTTCTC CTGCTGTGTTGTGTCTCGGAGTTTGTGCTATGAATGAAAGCTGCAGCGCA GTTTCAGGCTTGATCAAAGGCTAGATCAGTATCTCACTCGCAGCAGCGGG TAAGGCTACACTTTTCCGGGCTTCATGTTGCCAGGTAACAACAGTGACCG AAAGTCACCTCGTGACGTCACTCGCGTGGAGCGTGCGGCGCGTTTTTATT TGTCGCATGGCGGGAAGCATGCTATTCTGATCGAACACTGGTCTTCGAAT GCCACTTGTCCCTTTCGTCTGTACTCGGCGGAAATGAAACTGCCAAAACT CCTTTGCCTCACCCTGTGCTGGCGTCACCATGGGTTTGGGCACACGATTT GAATGACAGTTTTGACCAAGTACTGCTTGACGTGGCTCGCCAGAGGTCGA CGTGTCGACGGGAAATTCGTCTAACTACGGCGCACGCGCGTAATTGTCGC TGTGGTTGGAAACGAGAGTGTCCTACACAGCTAACTCTGTTGGGAGCACG AGTAACTCCCGGCAGGTGTTCTATGAGACTCACGCTTACACCACTGGGTC AAAGTACTTGGTGGTCAAAATTTCCAGCGTTGTTGCTGTCAATACTCTGG TGTGAAGGCATTTATTTATTTCCTGGCCAGCTTACAGCTCCCTCAGCGGT TGCGATTTTCTTGTGTCTCACAATGATGCCTACTTTTTGCCATTGGCAGA ATGATGTCGCGGGTATACATGATCATTGTAATTTTGCTGTCTTCTCCCGT AAAACCACCACGGCGTGGACTGGAGCAACCATACCTCCCCCTCACGCCGT GATTGTATTGTTGTTCCTGCTTGTTGAACTCTTGAGCACCTCGCGAGCGG TCGCACACCCGCATGTCCCTTGGCCAGGGATTCGCCGAGATAGTCCATCA CAAGGACACCGTCAAGATGTGCTCTGACAACCTGGACCCGGCGGATATGG AGTCGTTTTGTGCCCGACATCGAGATGCTCCACAGGTGTGTGCGCATATT CTACCAAGTTTGATTGGGTCGAGCCTCGCAGCTCAATTAGTGAAACCGGA AGGCATACTTTGCTCGAAGCTCAAGGCTGCACCCACCAGGTCTCCGTGGG GGAGCTGCCTATTTCCCGCCCTTCCATTTTTGTTCCCGCAATGTACACAA ACGCGCCTGCACGCCTGAGCGACGTGCTGCTGTTTTCTCTACATTATTGA CCTGCGTCAACACGATTTTTTATTTGTGCCATTGGAAAGGGCTGTAGAGT GGCTCTTTCATCATTTTTTCACCTCTCTGACCCTCAAATTTGCGTATAGC GAAGAACTTGGCCTCTTTCTGGTTGTATTACGAGATATGGACGTGTTGGA AAGGGCCTACAACTACTTCGAATCGAATCCAGGAAGAAGCACCACGGTGA TAGCGGGGCTCGGTAGCCCTTGTGACAACTCCTTGTAACTTGTGGCCGGC CTTACTTTGGAAGCTGCCAGGGCTTGAATGACCGGGCCAGCTCGAGAGAA CGCCTGGTCAGCGATAGTTAGCTTGCTTTATGCCGGCTTTAGGCTTTAAA TTGATGGCACGGCGATCGTTACTCTTCGACCGCAACTGATCACGCGAGTG CAACCCTGCTGCTTGTTTCGATCTACATATGCAAAGCTGTGAACGATGTG GAGTTGTATCGATACCTGACCCAATCGTTCAAGGTATTCCAGCAAGTCGT CTATTCGAAAGCTTGGGGCACGAGCGCTTCTCGACGACGCTTGAGTGACG ACAAGTGTCGCGCCGAAGGCGGAGAAGGCGTTAGTGCTAAAATTAACGGC CCCCTGGAGGACGATGTGTTGGATGCCATGGCGACTGGGCTGAGAGGCTA CGTGATCGAGTTTGACCAGTTGGAAGAGACAGCCAATCGGTGAGCCGATC AAGTCTTTTTGACGAGTGTTTATGTCCCGCGATGGAGAAAAATACGTGTT CCAACACTTTGGCACCACCTGGGACCAATGCCATCCGTTTGCCTGCGTCT TCCGGGATCTAGAAGGTTGCGTGGAAAATCTGTCTTTCTGCTTTCGGACG TGTTCACGCGGAGATCCCGCAGATAAACACTCACATCTCCCTTCTCGGCG TTGTTCTTTTTCGCCTATGCGGTGCCCGACGTTGACGTTGCAGGCCAAGA ATCCGAGCAGGCGTCGGTGGCCTTCTCATCAACGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8704:209..4697-

>mRNA_Ecto-sp13_S_contig8704.20168.1 ID=mRNA_Ecto-sp13_S_contig8704.20168.1|Name=mRNA_Ecto-sp13_S_contig8704.20168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8704:209..4697- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTATCGATGATGACCCACGCCACTGCCTCACGGCGGCATCAGTGTCC
GTGTGACTCCCCCGCGCCTGGATGTCCTTATGGCATCGGCACGGGGGACG
GAAACGGCACTCTCCTTGGAGAGACTCAGCTTCCCATGGACCCGTCCACT
TGCATATTTTGGTGTACAGTTGCCCTGGGGGCTCTTGTGAAGGGCAGCCC
TCTTGAATCGGTGGCGAACTACTTTCGATTGGCGAGCGTCTCGCTAGATT
CCAACACTGGCCCTGCGAACCCCGAGCTTGCAAGGGCATGGACGATCCTG
GGATACCTATACGGCTTCATGGGAGACATGTCGAAGTTTGAAGAATACCT
GGGATTTGCGGATGCCTTCTTCACGGCTTCCATCAATGAAGGGTCGGCTG
ACACACTGCCAGCGGGATTCGCCGAGATAGTCCATCACAAGGACACCGTC
AAGATGTGCTCTGACAACCTGGACCCGGCGGATATGGAGTCGTTTTGTGC
CCGACATCGAGATGCTCCACAGGTTGCAACCCTGCTGCTTGTTTCGATCT
ACATATGCAAAGCTGTGAACGATGTGGAGTTGTATCGATACCTGACCCAA
TCGTTCAAGGTATTCCAGCAAGTCGTCTATTCGAAAGCTTGGGGCACGAG
CGCTTCTCGACGACGCTTGAGTGACGACAAGTGTCGCGCCGAAGGCGGAG
AAGGCGTTAGTGCTAAAATTAACGGCCCCCTGGAGGACGATGTGTTGGAT
GCCATGGCGACTGGGCTGAGAGGCTACGTGATCGAGTTTGACCAGTTGGA
AGAGACAGCCAATCGGCCAAGAATCCGAGCAGGCGTCGGTGGCCTTCTCA
TCAACGGGTAA
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