mRNA_Ecto-sp13_S_contig8691.20151.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 5.390e-41 Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 2
Query: 2 YDLSELRLALYNGASRVRAVDVTVDGSLATTWTSSGTTDGFESIDLSGYSGQDITVMGVLDNLEWLSIKETEIMVLSDGVVSPPSPST 265
YDLS+LRLALYNGA+RVR VDV+VDGSLATTWTSSGTTDGFE+IDLSGYSGQDITV GVLDNLEWLSIKETEIMVLSDGVV PPS S+
Sbjct: 250 YDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGVLDNLEWLSIKETEIMVLSDGVVFPPSASS 337
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 146 bits (369), Expect = 5.680e-39 Identity = 74/88 (84.09%), Postives = 81/88 (92.05%), Query Frame = 2
Query: 2 YDLSELRLALYNGASRVRAVDVTVDGSLATTWTSSGTTDGFESIDLSGYSGQDITVMGVLDNLEWLSIKETEIMVLSDGVVSPPSPST 265
YDLSELRLALY G +RVR VDVTVDGSLATTWTSSGTTDGFE++DLSGYSGQD+TV GVLD+ EW+SI ET+IMVLSD VVSPPSPST
Sbjct: 252 YDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLDDSEWVSITETDIMVLSDSVVSPPSPST 339
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 102 bits (253), Expect = 2.270e-23 Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 2
Query: 2 YDLSELRLALYNGASRVRAVDVTVDGSLATTWTSSGTTDGFESIDLSGYSGQDITVMGV-LDNLEWLSIKETEIMVLSDGVVSPPSPST 265
Y + EL+LA+Y G +RVR V V VDG L TTWTSSGTT GFES+D+SG +GQ +T+ G L + EWLSI ETEIMV + GV PPSP+T
Sbjct: 246 YSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVYN-GVAPPPSPTT 333
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 3.100e-22 Identity = 55/85 (64.71%), Postives = 62/85 (72.94%), Query Frame = 2
Query: 2 YDLSELRLALYNGASRVRAVDVTVDGSLATTWTSSGTTDGFESIDL-SGYSGQDITVMGVLDNLEWLSIKETEIMVLSDGVVSPP 253
+ L ELR+ALYNG RVR +DV+VDG L TWTSSGTTDGFESI G SG I + GVLD+ EWLSI ETEIMV VV+PP
Sbjct: 312 FGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIETEIMVWPQNVVTPP 396
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 4.240e-22 Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 2
Query: 2 YDLSELRLALYNGASRVRAVDVTVDGSLATTWTSSGTTDGFESIDLSGYSGQDITVMGVLDNLEWLSIKETEIMVLSDGVVSPPSPST 265
YDL ELRLA++ G R ++ V VD +L TTWTSSGTTDGFE+IDLSG GQ + + GVLD+ EWLSI E EIMVL DG + P P+T
Sbjct: 236 YDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEITGVLDDSEWLSIIEAEIMVLEDG--ASPMPTT 321
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 1.080e-21 Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 2
Query: 2 YDLSELRLALYNGASRVRAVDVTVDGSLATTWTSSGTTDGFESIDLSGYSGQDITVMGVLDNLEWLSIKETEIMVLSDGVVSPPSPST 265
YDL E+RLA++ G R ++V VD +L TWTSSGTTDGFE+ID+SG SGQ + + GVLD+ EWLSI E EIM+L DG + P+P+T
Sbjct: 423 YDLDEVRLAMFKGTERQVTMEVRVDDALVITWTSSGTTDGFEAIDMSGTSGQVLEITGVLDDSEWLSIIEAEIMLLEDG--ASPTPTT 508
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 7.130e-19 Identity = 51/89 (57.30%), Postives = 64/89 (71.91%), Query Frame = 2
Query: 2 YDLSELRLALYNGASRVRAVDVTVDGSLATTWTSSGTTDGFESIDLSGYSGQDITVMGVLD-NLEWLSIKETEIMVLSDGVVSPPSPST 265
Y++ +LRL +Y G SR R VDV+VDG+L TTWTSSGTT FES+DLSG GQ +T+ G + +WLSI ETEIMV +G PSP+T
Sbjct: 249 YNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVY-EGDAPAPSPTT 336 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8691.20151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8691.20151.1 >prot_Ecto-sp13_S_contig8691.20151.1 ID=prot_Ecto-sp13_S_contig8691.20151.1|Name=mRNA_Ecto-sp13_S_contig8691.20151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp LRPLRAPPRVVQRSVESQGSRCNRRWFPRHHLDQLGHNGRLREHRSFGIFback to top mRNA from alignment at Ecto-sp13_S_contig8691:108..963- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8691.20151.1 ID=mRNA_Ecto-sp13_S_contig8691.20151.1|Name=mRNA_Ecto-sp13_S_contig8691.20151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8691:108..963- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8691:108..963- >mRNA_Ecto-sp13_S_contig8691.20151.1 ID=mRNA_Ecto-sp13_S_contig8691.20151.1|Name=mRNA_Ecto-sp13_S_contig8691.20151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8691:108..963- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |