mRNA_Ecto-sp13_S_contig869.20149.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig869.20149.1
Unique NamemRNA_Ecto-sp13_S_contig869.20149.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig869.20149.1 vs. uniprot
Match: A0A6H5KC47_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC47_9PHAE)

HSP 1 Score: 771 bits (1992), Expect = 4.560e-278
Identity = 439/533 (82.36%), Postives = 446/533 (83.68%), Query Frame = 1 
Query:   16 MTDRMEGQSLNVIAALALANETALENRDRFAYFRKWSDEYAGVWTAGVQGLVAAVGISGALGLLGVAAGLSKGKACSPCINLLRLTCAVTFTTTWAAFILSSLVIVGTVTWSDGCHFLNLAATRGWETVGVDGLSAAVLDGCLRGNAVTEEFNITDALGFFESYPGTAEEVGALNATFAEADVEATIYAISDFVYSLNATAVAISLLDFYTNAEVNGSLLLEPDCPYN--------------------------------------------------------------------AGGTRQN------ETALDYMSRVFNSSDCSSINGDLLSAWDLAARERAYRDQMQDDLTCITTSSNVECSNSXXXXXXXXXXXXXXXXXTFSLSPCSCTSDGYIGAPDTLLAYFRAFADNVTALRADLAGLLTPPLEAETAAFSGQGALANASSDSWAARCASRCSFVDSHYRNFEGAMCGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLKEVWAKSMTKVLSTEEDIVMEEY 1392
            MTDRM+GQSLNVIAALALANETALENRDRFAYFR+WSDEYAGV TAGVQGLVAAVGISGA+GLLGVAAGL+KGKACSPCINLLRLTCAVTFTTTWA+FILSSLVIVG VTWSDGC FLNLAATRGWETVGVDGLSAAVLDGCLRGNAVTEEFNITDALGFFESYPGTAEEVGALNATFAE DVE TIYAISDFVYSLNATA A+SLLDFYTNAEVNGSLLLEPDCPYN                                                                    AGGTRQ+      ETALDYMSRVFNSSDCSSINGDLLSAWDLAARERAYRDQMQDDLTC TTSSNVEC   XXXXXXXXXXXXXXXX  FSLSPCSCTSDGY GAPDTLLAYFRAFADNVTALRADLAGLLTPPLEAETAAFSGQGALANASSDSWAARCASRCSFVDSHYRNFEGAMCGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLKEVWAKSMTKVLSTEEDIVMEEY
Sbjct:    1 MTDRMKGQSLNVIAALALANETALENRDRFAYFRRWSDEYAGVRTAGVQGLVAAVGISGAVGLLGVAAGLAKGKACSPCINLLRLTCAVTFTTTWASFILSSLVIVGAVTWSDGCQFLNLAATRGWETVGVDGLSAAVLDGCLRGNAVTEEFNITDALGFFESYPGTAEEVGALNATFAETDVETTIYAISDFVYSLNATAGAVSLLDFYTNAEVNGSLLLEPDCPYNVTFEGEEATAYLGRPWLALPTVSTAAETVTTGATTSDGEDGGGVGNSSSSYDSAGNLTTVDASLTPWQAGGTRQSFGRQGDETALDYMSRVFNSSDCSSINGDLLSAWDLAARERAYRDQMQDDLTCTTTSSNVECXXXXXXXXXXXXXXXXXXX--FSLSPCSCTSDGYTGAPDTLLAYFRAFADNVTALRADLAGLLTPPLEAETAAFSGQGALANASSDSWAARCASRCSFVDSHYRNFEGAMCGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLKEVWAKSMTKVLSTEEDIVMEEY 531
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig869.20149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KC47_9PHAE4.560e-27882.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig869contigEcto-sp13_S_contig869:9658..13259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1395
Hectar predicted targeting categorysignal anchor
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004670.1
Cds size1380
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig869.20149.1prot_Ecto-sp13_S_contig869.20149.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig869 9673..13259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.645613-UTR-Ecto-sp13_S_contig869:9657..96721681464141.645613-UTR-Ecto-sp13_S_contig869:9657..9672Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig869 9658..9672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.656178-CDS-Ecto-sp13_S_contig869:9672..98191681464141.656178-CDS-Ecto-sp13_S_contig869:9672..9819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 9673..9819 +
1681464141.6683917-CDS-Ecto-sp13_S_contig869:10300..103881681464141.6683917-CDS-Ecto-sp13_S_contig869:10300..10388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 10301..10388 +
1681464141.679636-CDS-Ecto-sp13_S_contig869:10637..108131681464141.679636-CDS-Ecto-sp13_S_contig869:10637..10813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 10638..10813 +
1681464141.6922977-CDS-Ecto-sp13_S_contig869:11080..111791681464141.6922977-CDS-Ecto-sp13_S_contig869:11080..11179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 11081..11179 +
1681464141.7042944-CDS-Ecto-sp13_S_contig869:11666..118401681464141.7042944-CDS-Ecto-sp13_S_contig869:11666..11840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 11667..11840 +
1681464141.7174776-CDS-Ecto-sp13_S_contig869:12062..120811681464141.7174776-CDS-Ecto-sp13_S_contig869:12062..12081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 12063..12081 +
1681464141.7275-CDS-Ecto-sp13_S_contig869:12582..132591681464141.7275-CDS-Ecto-sp13_S_contig869:12582..13259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 12583..13259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig869.20149.1

>prot_Ecto-sp13_S_contig869.20149.1 ID=prot_Ecto-sp13_S_contig869.20149.1|Name=mRNA_Ecto-sp13_S_contig869.20149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
MTDRMEGQSLNVIAALALANETALENRDRFAYFRKWSDEYAGVWTAGVQG
LVAAVGISGALGLLGVAAGLSKGKACSPCINLLRLTCAVTFTTTWAAFIL
SSLVIVGTVTWSDGCHFLNLAATRGWETVGVDGLSAAVLDGCLRGNAVTE
EFNITDALGFFESYPGTAEEVGALNATFAEADVEATIYAISDFVYSLNAT
AVAISLLDFYTNAEVNGSLLLEPDCPYNAGGTRQNETALDYMSRVFNSSD
CSSINGDLLSAWDLAARERAYRDQMQDDLTCITTSSNVECSNSSSSSSPS
LLSSSSSSSSTFSLSPCSCTSDGYIGAPDTLLAYFRAFADNVTALRADLA
GLLTPPLEAETAAFSGQGALANASSDSWAARCASRCSFVDSHYRNFEGAM
CGTALGGLAQVGFSMFMIGVGGLALAVTSGIMVHRLKEVWAKSMTKVLST
EEDIVMEEY*
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mRNA from alignment at Ecto-sp13_S_contig869:9658..13259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig869.20149.1 ID=mRNA_Ecto-sp13_S_contig869.20149.1|Name=mRNA_Ecto-sp13_S_contig869.20149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig869:9658..13259+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGACTTCCTGGACATGACAGACAGAATGGAAGGGCAGAGCCTCAACGT
GATCGCCGCCTTGGCCCTTGCGAATGAAACGGCTCTTGAGAACCGCGACC
GTTTCGCCTACTTTCGGAAATGGTCGGACGAGTACGCCGGGGTGTGGACA
GCGGGCGTACAGGTGCGCGCGCTTTGCCCGTCAGCTCATTTCTGCCGTCC
TCAAAACGAAAAAAAAATCGAGATGCAGTTGAAAATAGCGCAACACTCAA
GGATTTACTCCGTCGCTCTCCCGTGAACTCCAGGCTTTGGCGTTGGAATT
GTTGCTGCTCTATACGACGTTGTGAATCGATGAGCATCCTAAGTAGTAGT
ACGTAAAGTACTCTCCGCCAAATTATTGAGCCTATCCTTTTCTAACGGCC
TTGCTCGTGGGCCGAACGTGAGGGAATATCAAAGCATCCGAGTCTTCCGT
TTTCAAGAGTCCGTGTATCCAAATCGTTGGCCCTTCGTTACTCCACGGGG
CACATTGTTACCATCTACGTTTGCCAATAAACCATCATCGTTCAATCAAG
AATAGGTCTTGCGATGCAGTACCTGACGACACTACTTGAGACATATCTCA
AAAACCGTTCTTGCATCACAGAAAACGTCTCTTTGTCGCGCAGGGGCTGG
TGGCCGCGGTGGGAATTTCCGGGGCGTTGGGGCTGCTCGGAGTCGCCGCG
GGACTCTCCAAGGGCAAGGCTTGCTCGCCATGTAAGCTATCGCTTGTTGC
GCACACTCGTTGCGCCGCGTGTTTTTAACCAAAAGCTTCGGTCGTCGTTG
ATCTTGCGGCTGGCGGTGCTGTTATCGCTGCTACTGCTGCTGCTGCCGCC
TGCTGCTGTCGTCTTCGTCACCACCATCGTCCTCGTCGTTTTCCCCTCCT
CGCCGTCCTAGCGTTCGCGTGTCCTCGCCCCACTAATCGAACAACATGCT
TTATCACCAACCAACCCATGTTTGCGACAGGCATAAATCTGCTGCGCCTG
ACCTGTGCCGTGACGTTCACGACCACCTGGGCGGCGTTCATCCTGTCGTC
CCTGGTCATCGTTGGTACCGTCACGTGGTCGGACGGCTGTCACTTCTTGA
ACCTCGCCGCCACTAGAGGCTGGGAGACTGTCGGGGTGGACGGTCTAAGC
GCGGCGGTGCGTTATGTGGGAGTGTACCAGGCTCGGCCGTGCCGTCATTA
CCTGAACAGAAGCTTATGTTGTAAGGTTGGTCGGTAAGTGCTGTGGAGAG
CGAGGGGATGGCGGCCCTACTGCTCGTCTCCTTGGAATCTGGTCTGCCTT
TCGTGTTTGCTTTTCACATAGCGATTAACGCACCTCTTACAAATTCGAGG
GTTTTGACGTGTGGTCGAATTTGAGAGTTCAAATCCTTGCCGCTGTCTCC
TTCGCCGTAACCTATCCCCGAAGGTTCTCGATGGATGCCTCCGTGGAAAC
GCCGTGACGGAAGAGTTTAACATCACGGATGCGTTGGGGTTCTTCGAGTC
GTATCCTGGCACCGCAGAAGAGGTGACTTGAAGTATACCCACCTCAATGA
GTGAGTGAACACGCACGATCATTTCTTTGAAATGATCCGAGTCAATGTTG
GCATCGATCGGTGTGTTTTGCTGATTCTTCTGTGTGTATCTATCTTACTG
GTGGTTTTACTAAGTGAACAGGACGGGATACCGCAGCTTGTGTCGTGTAA
GCCGTCCCGACTATTGAGCCAACAGGTGAGTGTTGATGCGCGGCAGAAAA
GAAGGTCGCAAGGCATAATGAATAACCCAACGGTGGTGAAAACCCCGGCC
TTCCTGGTGTTGGCACTCGCTTGACTTGAGTTTTTTTTATGCTACTATCT
CACACCTGACCCTTCAGCTGACAGGGTAGATCCCATCCTTCTGTCTATCT
TATTCACACGGCCCTCCTCCCCCCCACCCCTACCCTCAAAAATGATGCCT
GAGTATAATCGTTCGTGGCTCGATTCCCCTGAAAACCAACAAACCCACCC
AATCGATAGGTGGGTGCCCTGAACGCGACCTTCGCGGAGGCGGACGTGGA
GGCGACGATCTACGCCATCTCCGACTTCGTCTACTCCCTCAACGCCACGG
CCGTCGCCATCTCCCTCCTCGACTTCTACACCAACGCCGAGGTCAACGGC
TCGCTCCTCTTGGAACCGGACTGCCCGTACAACGTCACCTTCGAGGGCGA
GGAGGCCACCGCCTACCTCGGGCGGCCGTGGCTCGCGCTTCCGACGATTT
CGACGGCAGCAGAAACGGTGACGACTGGCGATACTACAAGCGACGGCCAA
GATGGAGGAGGCGTAGGTAGCAGCAGCAGCAACAGCAACAGCAGCAGCAC
CTACGACTCGGCCGGCAATCTGACGACGGTAGACGCGCCACTAACTCCGT
GGCAGGCCGGCGGGACGCGCCAGAGTTTCGGGCGGCAAGGAGGTACACAT
ATCATGCGGCGTGTGTTCCGTAGGGAGGATCGATCGCCGCGCAGCACTCG
GTATATCACGTGGGGCGGGCGCGGTGGGGGCGTTTTTCGGTCCAACTCTT
GGCAGGCGGCGTCGCACACAATGCTTTGTGTGGACATTTGTGTCGCATCC
GACGGAGAATGTTTTGAAAGAAAAAATAAATTACATTTTTGAGAACAGCA
CTAACAGCAGGGTTTGTCCTCACTGTAAGTATGCCGGCCTCGCCCCCCCA
TACCATGATCGTCGGCCCGCCACCATCGTCGCCTCTATCACTTGTAGCAG
ACTGAACGGGACACTACTAGTTTGCAGCTACAGACTACTCCACCATTGAC
CGACGATCCACGCGATACCCTGCCACAACTTTACATCAATGCATGTTCAG
CCCTCACGTCGGCCCTTGACCCCCTCTCCACCCGCGTCCAACGCCGCACT
CCATCGTCGGTTCGTCCATCCCCAGACGAAACGGCCTTGGACTACATGTC
CCGGGTGTTCAACTCGTCGGACTGTTCCTCGATCAACGGCGACCTCCTCT
CCGCGTGGGACCTGGCGGCGCGCGAGCGGGCCTACCGAGATCAGATGCAG
GACGACCTCACATGCATAACGACATCGTCGAACGTAGAGTGCTCAAATTC
CTCCTCCTCGTCGTCGCCTTCGCTACTCTCCTCGTCGTCCTCCTCCTCTT
CGACGTTCTCCCTGTCACCCTGCTCTTGCACGAGCGACGGCTACATCGGC
GCGCCCGACACCCTCCTGGCCTACTTCAGGGCCTTCGCCGACAACGTTAC
GGCCCTCCGCGCCGACCTGGCGGGCCTCCTCACCCCGCCCCTGGAAGCGG
AAACCGCGGCGTTTTCGGGGCAGGGGGCGCTGGCCAATGCGTCCTCGGAC
TCCTGGGCGGCGCGATGCGCGTCTCGGTGCTCCTTCGTCGACTCGCATTA
CCGAAACTTCGAGGGCGCGATGTGCGGCACGGCGCTGGGCGGGCTCGCCC
AGGTCGGGTTCTCCATGTTCATGATCGGAGTCGGCGGGCTGGCCCTCGCG
GTCACCTCGGGGATCATGGTCCACAGGCTCAAGGAGGTGTGGGCGAAGAG
CATGACCAAGGTGCTCAGCACGGAGGAGGACATCGTGATGGAAGAGTACT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig869:9658..13259+

>mRNA_Ecto-sp13_S_contig869.20149.1 ID=mRNA_Ecto-sp13_S_contig869.20149.1|Name=mRNA_Ecto-sp13_S_contig869.20149.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig869:9658..13259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGACAGAATGGAAGGGCAGAGCCTCAACGTGATCGCCGCCTTGGC
CCTTGCGAATGAAACGGCTCTTGAGAACCGCGACCGTTTCGCCTACTTTC
GGAAATGGTCGGACGAGTACGCCGGGGTGTGGACAGCGGGCGTACAGGGG
CTGGTGGCCGCGGTGGGAATTTCCGGGGCGTTGGGGCTGCTCGGAGTCGC
CGCGGGACTCTCCAAGGGCAAGGCTTGCTCGCCATGCATAAATCTGCTGC
GCCTGACCTGTGCCGTGACGTTCACGACCACCTGGGCGGCGTTCATCCTG
TCGTCCCTGGTCATCGTTGGTACCGTCACGTGGTCGGACGGCTGTCACTT
CTTGAACCTCGCCGCCACTAGAGGCTGGGAGACTGTCGGGGTGGACGGTC
TAAGCGCGGCGGTTCTCGATGGATGCCTCCGTGGAAACGCCGTGACGGAA
GAGTTTAACATCACGGATGCGTTGGGGTTCTTCGAGTCGTATCCTGGCAC
CGCAGAAGAGGTGGGTGCCCTGAACGCGACCTTCGCGGAGGCGGACGTGG
AGGCGACGATCTACGCCATCTCCGACTTCGTCTACTCCCTCAACGCCACG
GCCGTCGCCATCTCCCTCCTCGACTTCTACACCAACGCCGAGGTCAACGG
CTCGCTCCTCTTGGAACCGGACTGCCCGTACAACGCCGGCGGGACGCGCC
AGAACGAAACGGCCTTGGACTACATGTCCCGGGTGTTCAACTCGTCGGAC
TGTTCCTCGATCAACGGCGACCTCCTCTCCGCGTGGGACCTGGCGGCGCG
CGAGCGGGCCTACCGAGATCAGATGCAGGACGACCTCACATGCATAACGA
CATCGTCGAACGTAGAGTGCTCAAATTCCTCCTCCTCGTCGTCGCCTTCG
CTACTCTCCTCGTCGTCCTCCTCCTCTTCGACGTTCTCCCTGTCACCCTG
CTCTTGCACGAGCGACGGCTACATCGGCGCGCCCGACACCCTCCTGGCCT
ACTTCAGGGCCTTCGCCGACAACGTTACGGCCCTCCGCGCCGACCTGGCG
GGCCTCCTCACCCCGCCCCTGGAAGCGGAAACCGCGGCGTTTTCGGGGCA
GGGGGCGCTGGCCAATGCGTCCTCGGACTCCTGGGCGGCGCGATGCGCGT
CTCGGTGCTCCTTCGTCGACTCGCATTACCGAAACTTCGAGGGCGCGATG
TGCGGCACGGCGCTGGGCGGGCTCGCCCAGGTCGGGTTCTCCATGTTCAT
GATCGGAGTCGGCGGGCTGGCCCTCGCGGTCACCTCGGGGATCATGGTCC
ACAGGCTCAAGGAGGTGTGGGCGAAGAGCATGACCAAGGTGCTCAGCACG
GAGGAGGACATCGTGATGGAAGAGTACTGA
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