mRNA_Ecto-sp13_S_contig869.20148.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig869.20148.1
Unique NamemRNA_Ecto-sp13_S_contig869.20148.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig869.20148.1 vs. uniprot
Match: A0A2P4YNQ6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNQ6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.550e-8
Identity = 52/198 (26.26%), Postives = 92/198 (46.46%), Query Frame = 1 
Query:  316 GQEGTWYENTLTNLLVEYCEKEERGVHHRYVTSQNATAAKDEYG----VCVQTLDGDQ--DAYAAGLCERVANCYWEEPWEY-LARGRRYTDVQYEANERAARDYMQ---SAMLSYGTLGFVLAVAVLAGCAKFAVRRGIYNKCVCDSDLQRDRTGYTDLEQKVPAAVFFCGLVTVVVAALLGLQGNSYISSGLDLMF 879
            G    +Y++ +T + +  CE++      R+V   + TA  D+ G    V + +L  D+  +AY AG CE + NCYW+E  E  + R + Y D      +++A D ++   + ++ +   G VL V  L     F + R   N+C       R+  GYT +++ +P   FF   + VV  +         + + +D MF
Sbjct:  100 GGNDKFYQDLITAIKITMCEQKVEKNRVRFVACTDDTAYLDDNGDPVKVTISSLTDDETVEAYGAGQCEVMPNCYWDEIVEGDVTRAKVYADEDSTMTKKSAEDKIKEWGTGVIGFVIPGIVLGVLSLLTMVFFFICRCCCNRC--GGRYPREE-GYTCIQKFLPVFFFFLFAIGVVAVSAAAFLYRGTMLTAVDDMF 294
[Close]
BLAST of mRNA_Ecto-sp13_S_contig869.20148.1 vs. uniprot
Match: A0A2P4Y9E5_9STRA (Glucan 1,3-beta-glucosidase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y9E5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.720e-8
Identity = 58/238 (24.37%), Postives = 101/238 (42.44%), Query Frame = 1 
Query:  316 GQEGTWYENTLTNLLVEYCEKEERGVHHRYVTSQNATAAKDEYG----VCVQTLDGDQ--DAYAAGLCERVANCYWEEPWEY-LARGRRYTDVQYEANERAARDYMQSAMLSYGTLGFVLAVAVLAGCAKFAVRRGIYNKCVCDSDLQRDRTGYTDLEQKVPAAVFFCGLVTVVVAALLGLQGNSYISSGLDLMFITVDEAAEGVNDLASSVSLPLASFVGSLNASAEEVQRLLSSAD 1008
            G    +Y++ +T + +  CE++      R+V   + TA  D+ G    V + +L  D+   AY AG CE + NCYW+E  E  + R + Y D      +++A D ++      G +GFV+   VL          G+               GYT +++ +P   FF   + VV  +         + + +D MF       +  ++   SV  PL     ++  SA E++  L+  D
Sbjct:  498 GGNDKFYQDLITAIKITMCEQKVEKNRVRFVACTDDTAYLDDNGDPVKVTISSLTDDETVQAYGAGQCEVMPNCYWDEIVEGDVTRAKVYADEDSTMTKKSAEDKIKE--WGTGVIGFVIPGIVL----------GVLK-------------GYTCIQKFLPVLFFFLFAIGVVAVSAAAFLYRGTMLTAVDDMFNASSGTLDNASEWIISVRTPLEQIGDTVVDSAAEIKTKLAGTD 710
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig869.20148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P4YNQ6_9STRA4.550e-826.26Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A2P4Y9E5_9STRA6.720e-824.37Glucan 1,3-beta-glucosidase n=1 Tax=Phytophthora p... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig869contigEcto-sp13_S_contig869:6000..8628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score87.8
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog36331.EPrPI00000015163
Model size1200
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.function. Source PGD
EggNOG OGs1MDFT@121069,28NQB@1,2QSZJ@2759
Cds size1200
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.5791724-CDS-Ecto-sp13_S_contig869:5999..64001681464141.5791724-CDS-Ecto-sp13_S_contig869:5999..6400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 6000..6400 +
1681464141.5899491-CDS-Ecto-sp13_S_contig869:6655..69521681464141.5899491-CDS-Ecto-sp13_S_contig869:6655..6952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 6656..6952 +
1681464141.5989914-CDS-Ecto-sp13_S_contig869:7141..73261681464141.5989914-CDS-Ecto-sp13_S_contig869:7141..7326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 7142..7326 +
1681464141.6094403-CDS-Ecto-sp13_S_contig869:7949..81291681464141.6094403-CDS-Ecto-sp13_S_contig869:7949..8129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 7950..8129 +
1681464141.6190283-CDS-Ecto-sp13_S_contig869:8491..86281681464141.6190283-CDS-Ecto-sp13_S_contig869:8491..8628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig869 8492..8628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig869.20148.1prot_Ecto-sp13_S_contig869.20148.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig869 6000..8628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig869.20148.1

>prot_Ecto-sp13_S_contig869.20148.1 ID=prot_Ecto-sp13_S_contig869.20148.1|Name=mRNA_Ecto-sp13_S_contig869.20148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=400bp
MLRFRYLGVTTMAMLLVVTLSAVAAAVAAAVADGVLLYKPEQGSTPDARR
QAQTVRMLAAATNLQYDCAAHNISDEEAVEAFDNTTTLSLGLGLARILTG
NRRAGGQEGTWYENTLTNLLVEYCEKEERGVHHRYVTSQNATAAKDEYGV
CVQTLDGDQDAYAAGLCERVANCYWEEPWEYLARGRRYTDVQYEANERAA
RDYMQSAMLSYGTLGFVLAVAVLAGCAKFAVRRGIYNKCVCDSDLQRDRT
GYTDLEQKVPAAVFFCGLVTVVVAALLGLQGNSYISSGLDLMFITVDEAA
EGVNDLASSVSLPLASFVGSLNASAEEVQRLLSSADEWIDQLESGMLLRL
DSFDNRFLGRGAEFDGLAERVELASADFKSEAVDDLYTALEMLQVRMLW*
back to top

mRNA from alignment at Ecto-sp13_S_contig869:6000..8628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig869.20148.1 ID=mRNA_Ecto-sp13_S_contig869.20148.1|Name=mRNA_Ecto-sp13_S_contig869.20148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig869:6000..8628+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGATTCAGGTACCTTGGCGTGACCACCATGGCGATGCTTCTAGT
AGTCACTTTATCGGCGGTAGCGGCGGCCGTAGCGGCGGCCGTAGCGGACG
GAGTACTCCTGTACAAACCAGAGCAGGGTTCGACGCCGGACGCACGGCGG
CAGGCGCAGACGGTCAGAATGCTGGCGGCGGCCACCAACCTCCAGTACGA
TTGCGCCGCACACAATATCTCTGACGAGGAAGCCGTGGAAGCCTTCGACA
ACACAACGACGCTATCGCTTGGCCTAGGTTTAGCCAGGATATTGACAGGT
AATAGGCGGGCAGGCGGACAGGAGGGCACCTGGTACGAAAACACGCTGAC
GAACCTGCTCGTCGAGTACTGTGAAAAGGAGGAGCGGGGCGTGCACCACC
GGTATGTAGCCTTTAATTGGATTATTGTTTAATTAACAATTTTGTCGAAT
CTCCAGCACCGCACCAGGACGCCGTTTTTCGGGTTGTCTCTTGAGAGAAT
ATATGTTTGATAGCACTGTAGTGCCGGCCGGAAGAAAGCGACCAGGTCTC
CCCGAACGGGACGAACATCCTCGTCGTTCTCTCGGACCACCTCCATCGAA
CCCGTCCATCCTTCCCAACCCCGCCCCCCCTCCAATCCTCACCACCGCAC
ACACAGATACGTGACCAGTCAGAACGCCACGGCCGCGAAAGACGAGTACG
GCGTCTGTGTGCAGACGCTCGATGGCGACCAAGATGCATACGCGGCGGGC
CTGTGCGAGCGGGTTGCAAACTGCTACTGGGAGGAGCCTTGGGAGTATCT
GGCACGAGGACGGCGGTATACCGATGTGCAGTACGAGGCCAACGAGCGCG
CTGCCCGAGACTACATGCAGTCCGCCATGCTATCGTACGGAACTCTGGGG
TTCGTTTTGGCGGTGGCCGTGCTTGCGGGATGCGCCAAGTTTGCCGTGAG
AAGGTGGAAACATGTGTGTGTATTGTCCTCTAGACTATACCTTGCTAATT
ACGTACTACCACCGTATGGTTGTCACAATCGCTTGCAACGCAGGGCTGAC
ATGTTTCCAGTCTACCGTACGTGATGTTTCAGGCGCTTGTCTCACAATTG
GTCCTCCTCGTTCATGGAACACGTTTTGCCGCAACAAAAAAGGGGCATTT
ACAATAAGTGCGTGTGCGATAGCGACCTCCAGCGAGACCGCACGGGGTAC
ACCGACCTGGAACAGAAGGTCCCGGCGGCTGTGTTTTTCTGTGGACTTGT
GACCGTTGTTGTGGCGGCACTGCTGGGGTTGCAAGGGAACAGCTACATCA
GCTCGGGACTGGATCTCATGTTCATAAGTAAGGGGTGGTGTCGCCAAGAC
ATTCGTTGTCCTGCCGTCTCCACACGAATAGCTACCGCACGGTTTAATGA
TGTCTCTACCGCTGTACCCCCTCTAGTCCGTCTGTACACACGGCGTGGGT
ACAGCAGCAAGCATGCCTGACTCACTCAAACACACGCCGCACACTGTCTG
TGTAGGTTGAAGTTGCGCCGTCACACAGGCCCTGCGCCACTTTTCTGCCC
GCGGTCAGAGGATGATCTCTACTATACTTGACACCGCCCCAGTAAAGTAC
GGCATGGGCACGATGAAACACGCCCTTCAGAGTACGCCGTGAAGCGTGTT
CGTTGCGACAAGAAACAATAAAAATAAAAAGAAGCCAAAGACGCGGCATA
TCTCATACCCACTGTCTTCGGCAGAGTAACCTGGCGAGTGCCTACTCGTC
GTCTTGACCATCGTCGGCAGTTTCTCCCCACCGGGAGACGTTGCTTCTCT
CCTTGATATGAGCTCTGATTTGGGGGGACTACCCCGAAGAGAACTCTTCT
TTGCAAGTAGCAGTATCTCCGCCACACGGATCATTCAATGCTCACCTCCT
GTGCCTTTACAACGCGCCTCCAATGATGAATGGCCGATGACCGGACGCAG
CCGTGGACGAGGCAGCCGAAGGCGTCAACGACCTCGCCTCCTCCGTGTCC
TTGCCCCTAGCGAGTTTCGTCGGCTCTCTCAACGCCTCCGCTGAGGAGGT
CCAGCGGCTGCTGTCGAGCGCGGACGAGTGGATCGACCAGCTGGAGTCGG
GCATGCTGCTCAGGCTCGACTCGTTCGACAGTGCGCACAGGCAGGGAAGC
AGAAAAACAAACTGACTTTCTAGGGTTAGGGGTTGGGCACACGGCTAGAT
GCACTCTGTTTTTGCTCCTCCCTATGAACACGAAGTGGTATGTTGCTGCA
TCCACTGCCACCCTTACCAGCAGGCAAGTCGTCCCCTCAAGTGCGCGTTT
GTTTCCTGACCCGTTTGTACGCGAAGTAAGTAGCCTCGTCTGTTCTATTC
CAATCAATACCCAACGCGTCTTTTTGTTGCCTGCTGATCTACGTTCGGTT
GTTTGTTGTTGTTGTTGCTGGTGGTGGTGGTGGTGGCGTTGTTGTGTGTC
GCGGTTGACATGGTTATTGTCGTCTCTTTCGGACGAACAGAGATCGCTTT
TTAGGTCGAGGCGCTGAGTTTGACGGGCTTGCGGAAAGGGTAGAGCTCGC
CAGCGCCGACTTCAAGTCGGAAGCTGTCGACGACCTTTACACGGCCTTGG
AGATGCTCCAGGTAAGGATGTTATGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig869:6000..8628+

>mRNA_Ecto-sp13_S_contig869.20148.1 ID=mRNA_Ecto-sp13_S_contig869.20148.1|Name=mRNA_Ecto-sp13_S_contig869.20148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig869:6000..8628+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGATTCAGGTACCTTGGCGTGACCACCATGGCGATGCTTCTAGT
AGTCACTTTATCGGCGGTAGCGGCGGCCGTAGCGGCGGCCGTAGCGGACG
GAGTACTCCTGTACAAACCAGAGCAGGGTTCGACGCCGGACGCACGGCGG
CAGGCGCAGACGGTCAGAATGCTGGCGGCGGCCACCAACCTCCAGTACGA
TTGCGCCGCACACAATATCTCTGACGAGGAAGCCGTGGAAGCCTTCGACA
ACACAACGACGCTATCGCTTGGCCTAGGTTTAGCCAGGATATTGACAGGT
AATAGGCGGGCAGGCGGACAGGAGGGCACCTGGTACGAAAACACGCTGAC
GAACCTGCTCGTCGAGTACTGTGAAAAGGAGGAGCGGGGCGTGCACCACC
GATACGTGACCAGTCAGAACGCCACGGCCGCGAAAGACGAGTACGGCGTC
TGTGTGCAGACGCTCGATGGCGACCAAGATGCATACGCGGCGGGCCTGTG
CGAGCGGGTTGCAAACTGCTACTGGGAGGAGCCTTGGGAGTATCTGGCAC
GAGGACGGCGGTATACCGATGTGCAGTACGAGGCCAACGAGCGCGCTGCC
CGAGACTACATGCAGTCCGCCATGCTATCGTACGGAACTCTGGGGTTCGT
TTTGGCGGTGGCCGTGCTTGCGGGATGCGCCAAGTTTGCCGTGAGAAGGG
GCATTTACAATAAGTGCGTGTGCGATAGCGACCTCCAGCGAGACCGCACG
GGGTACACCGACCTGGAACAGAAGGTCCCGGCGGCTGTGTTTTTCTGTGG
ACTTGTGACCGTTGTTGTGGCGGCACTGCTGGGGTTGCAAGGGAACAGCT
ACATCAGCTCGGGACTGGATCTCATGTTCATAACCGTGGACGAGGCAGCC
GAAGGCGTCAACGACCTCGCCTCCTCCGTGTCCTTGCCCCTAGCGAGTTT
CGTCGGCTCTCTCAACGCCTCCGCTGAGGAGGTCCAGCGGCTGCTGTCGA
GCGCGGACGAGTGGATCGACCAGCTGGAGTCGGGCATGCTGCTCAGGCTC
GACTCGTTCGACAATCGCTTTTTAGGTCGAGGCGCTGAGTTTGACGGGCT
TGCGGAAAGGGTAGAGCTCGCCAGCGCCGACTTCAAGTCGGAAGCTGTCG
ACGACCTTTACACGGCCTTGGAGATGCTCCAGGTAAGGATGTTATGGTGA
back to top