prot_Ecto-sp13_S_contig869.20148.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig869.20148.1
Unique Nameprot_Ecto-sp13_S_contig869.20148.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length400
Homology
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BLAST of mRNA_Ecto-sp13_S_contig869.20148.1 vs. uniprot
Match: A0A2P4YNQ6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNQ6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.550e-8
Identity = 52/198 (26.26%), Postives = 92/198 (46.46%), Query Frame = 0 
Query:  106 GQEGTWYENTLTNLLVEYCEKEERGVHHRYVTSQNATAAKDEYG----VCVQTLDGDQ--DAYAAGLCERVANCYWEEPWEY-LARGRRYTDVQYEANERAARDYMQ---SAMLSYGTLGFVLAVAVLAGCAKFAVRRGIYNKCVCDSDLQRDRTGYTDLEQKVPAAVFFCGLVTVVVAALLGLQGNSYISSGLDLMF 293
            G    +Y++ +T + +  CE++      R+V   + TA  D+ G    V + +L  D+  +AY AG CE + NCYW+E  E  + R + Y D      +++A D ++   + ++ +   G VL V  L     F + R   N+C       R+  GYT +++ +P   FF   + VV  +         + + +D MF
Sbjct:  100 GGNDKFYQDLITAIKITMCEQKVEKNRVRFVACTDDTAYLDDNGDPVKVTISSLTDDETVEAYGAGQCEVMPNCYWDEIVEGDVTRAKVYADEDSTMTKKSAEDKIKEWGTGVIGFVIPGIVLGVLSLLTMVFFFICRCCCNRC--GGRYPREE-GYTCIQKFLPVFFFFLFAIGVVAVSAAAFLYRGTMLTAVDDMF 294
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BLAST of mRNA_Ecto-sp13_S_contig869.20148.1 vs. uniprot
Match: A0A2P4Y9E5_9STRA (Glucan 1,3-beta-glucosidase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y9E5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.720e-8
Identity = 58/238 (24.37%), Postives = 101/238 (42.44%), Query Frame = 0 
Query:  106 GQEGTWYENTLTNLLVEYCEKEERGVHHRYVTSQNATAAKDEYG----VCVQTLDGDQ--DAYAAGLCERVANCYWEEPWEY-LARGRRYTDVQYEANERAARDYMQSAMLSYGTLGFVLAVAVLAGCAKFAVRRGIYNKCVCDSDLQRDRTGYTDLEQKVPAAVFFCGLVTVVVAALLGLQGNSYISSGLDLMFITVDEAAEGVNDLASSVSLPLASFVGSLNASAEEVQRLLSSAD 336
            G    +Y++ +T + +  CE++      R+V   + TA  D+ G    V + +L  D+   AY AG CE + NCYW+E  E  + R + Y D      +++A D ++      G +GFV+   VL          G+               GYT +++ +P   FF   + VV  +         + + +D MF       +  ++   SV  PL     ++  SA E++  L+  D
Sbjct:  498 GGNDKFYQDLITAIKITMCEQKVEKNRVRFVACTDDTAYLDDNGDPVKVTISSLTDDETVQAYGAGQCEVMPNCYWDEIVEGDVTRAKVYADEDSTMTKKSAEDKIKE--WGTGVIGFVIPGIVL----------GVLK-------------GYTCIQKFLPVLFFFLFAIGVVAVSAAAFLYRGTMLTAVDDMFNASSGTLDNASEWIISVRTPLEQIGDTVVDSAAEIKTKLAGTD 710
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig869.20148.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P4YNQ6_9STRA4.550e-826.26Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A2P4Y9E5_9STRA6.720e-824.37Glucan 1,3-beta-glucosidase n=1 Tax=Phytophthora p... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 232..258
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 280..399
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..32
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..231
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 259..279
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..207
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..29
score: 0.539
NoneNo IPR availableTMHMMTMhelixcoord: 209..231
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 259..281

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig869contigEcto-sp13_S_contig869:6000..8628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig869.20148.1mRNA_Ecto-sp13_S_contig869.20148.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig869 6000..8628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig869.20148.1 ID=prot_Ecto-sp13_S_contig869.20148.1|Name=mRNA_Ecto-sp13_S_contig869.20148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=400bp
MLRFRYLGVTTMAMLLVVTLSAVAAAVAAAVADGVLLYKPEQGSTPDARR
QAQTVRMLAAATNLQYDCAAHNISDEEAVEAFDNTTTLSLGLGLARILTG
NRRAGGQEGTWYENTLTNLLVEYCEKEERGVHHRYVTSQNATAAKDEYGV
CVQTLDGDQDAYAAGLCERVANCYWEEPWEYLARGRRYTDVQYEANERAA
RDYMQSAMLSYGTLGFVLAVAVLAGCAKFAVRRGIYNKCVCDSDLQRDRT
GYTDLEQKVPAAVFFCGLVTVVVAALLGLQGNSYISSGLDLMFITVDEAA
EGVNDLASSVSLPLASFVGSLNASAEEVQRLLSSADEWIDQLESGMLLRL
DSFDNRFLGRGAEFDGLAERVELASADFKSEAVDDLYTALEMLQVRMLW*
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