mRNA_Ecto-sp13_S_contig8689.20144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8689.20144.1
Unique NamemRNA_Ecto-sp13_S_contig8689.20144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A6H5KFI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI5_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 4.590e-74
Identity = 124/137 (90.51%), Postives = 126/137 (91.97%), Query Frame = 1
Query:    1 MKPCGATSTVLTAVAACVAYAIVLLGGQQQRSGSEGGGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            MKPCGATS VLTAVAACVAYA +  GGQQQRS SEGGGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWR+AMVRGLELR GDRVVDMATGTADVAIMISEEL KLE TPGDR TI  TVEPEVIGIDPSARMLEV
Sbjct:    1 MKPCGATSAVLTAVAACVAYAFIFWGGQQQRSRSEGGGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRKAMVRGLELRDGDRVVDMATGTADVAIMISEELAKLEGTPGDRGTISGTVEPEVIGIDPSARMLEV 137          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: D8LTT5_ECTSI (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT5_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 6.840e-42
Identity = 82/91 (90.11%), Postives = 82/91 (90.11%), Query Frame = 1
Query:  139 MFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            MFDSIAPRYDLINKVISLGLDMQWRRAMVRGL LRAGDRVVDMATGTADVAIMISEEL KLE  P    TIP TVEPEVIGIDPSARMLEV
Sbjct:    1 MFDSIAPRYDLINKVISLGLDMQWRRAMVRGLGLRAGDRVVDMATGTADVAIMISEELAKLEGAPEG--TIPGTVEPEVIGIDPSARMLEV 89          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A7S2V4B4_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.370e-22
Identity = 52/102 (50.98%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  115 EYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEP----EVIGIDPSARMLE 408
            E E+GSG+MFD+IA  YD INK++SLGLD  WR  MV  LEL+  D+V+D+ATGTADVAI++ +++T+L    G++    +   P    +V+GIDPSA ML+
Sbjct:   35 EVEMGSGRMFDTIAAHYDSINKMMSLGLDQTWRGKMVAALELQHEDKVLDLATGTADVAILVGQKITELAKKSGNQHCSNDGSCPAGKQQVVGIDPSANMLD 136          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A0G4EH38_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EH38_VITBC)

HSP 1 Score: 97.8 bits (242), Expect = 5.640e-22
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  103 EGGGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            +G  E  +GSG+MFD++APRYD +N+V+S+G+D  WRR +V+ L+L   DRV+D+ATGTADVAI++ +++         RE   +   P VIG+DPSA ML V
Sbjct:   43 KGQSEAAMGSGRMFDAVAPRYDFVNRVMSMGMDRAWRRRLVQTLQLEPSDRVLDVATGTADVAILVGQQMKS-------RENDTKRDGPCVIGVDPSANMLAV 138          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A7S2H0R6_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0R6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.700e-22
Identity = 54/107 (50.47%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   91 RSGSEGGGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            RS S   G   LGSG+MFD+IA RYD++NKVISLG D+ WRRA+V  L++ + D V+D+ATGTADVAIMIS + +                   V G+DPSA MLE+
Sbjct:    4 RSPSSKVGSQPLGSGEMFDAIAKRYDMVNKVISLGSDVAWRRALVDALDITSEDNVLDLATGTADVAIMISRDASSRGAN--------------VTGLDPSANMLEI 96          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A4Q5XG34_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A4Q5XG34_9DELT)

HSP 1 Score: 93.6 bits (231), Expect = 8.790e-21
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  127 GSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            GSG MFD IA RYDL+N+VISLG+D  WR+  VR LEL+ G RV+D+ATGTAD+AIMI+ +   + +                +G+DPSA+MLEV
Sbjct:   13 GSGAMFDGIAHRYDLVNRVISLGIDQSWRKKTVRALELKPGARVLDLATGTADLAIMIARQHPHVSL----------------VGVDPSAKMLEV 91          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A3M1TVZ9_9DELT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1TVZ9_9DELT)

HSP 1 Score: 92.8 bits (229), Expect = 1.870e-20
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  127 GSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            GSG+MFD+IA RYDL+N+++S G+D++WR+  VR L LRAGDRV+D+ATGT D+AI I+      +VT              V+G+DPS RMLEV
Sbjct:   14 GSGEMFDAIAHRYDLVNRILSFGVDLRWRKETVRALALRAGDRVLDLATGTGDLAIAIARR--HPDVT--------------VVGVDPSRRMLEV 92          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A7S2XAZ6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAZ6_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.970e-20
Identity = 53/99 (53.54%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  109 GGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARML 405
            GGE  LGSG MFD I  RYDLIN+V+SLG+D  WRR +V+ LELR GD V+D+ATGTADVAI+      + +  PG +          V+GIDPSA+M+
Sbjct:   30 GGE-TLGSGAMFDKIFERYDLINRVMSLGMDQSWRRELVQALELRRGDSVLDLATGTADVAIL------EAQAEPGAK----------VLGIDPSAKMV 111          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: A0A7S0DP24_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DP24_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 2.580e-20
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  112 GEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            GE  LGSG+MFD +APRYDLIN+V+SL +D  WR  +V  LEL+ GDRV+D+ATGTADVAI+ +++   +EV                +GIDPS  M+E+
Sbjct:   35 GEPALGSGRMFDEVAPRYDLINRVMSLTMDQSWRLELVSSLELQDGDRVLDLATGTADVAILEAKDEKGVEV----------------LGIDPSENMIEL 118          
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Match: W7TJU2_9STRA (Ubiquinone menaquinone biosynthesis methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJU2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.630e-20
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   82 QQQRSGSEGGGEYE----LGSGKMFDSIAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMISEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV 411
            Q + +G EG  E E    LGSG MFD++A  YD +NK++SLGLD  WR  ++ GLEL+ GD+V+D+ATGTADVA++ +E       T G           +V GIDPSA ML +
Sbjct:   38 QLKMTGGEGSSEREARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGG-----------QVWGIDPSAGMLRI 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8689.20144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFI5_9PHAE4.590e-7490.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT5_ECTSI6.840e-4290.11Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
A0A7S2V4B4_9STRA5.370e-2250.982-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A0G4EH38_VITBC5.640e-2248.54Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2H0R6_9STRA9.700e-2250.472-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A4Q5XG34_9DELT8.790e-2151.58Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A3M1TVZ9_9DELT1.870e-2051.58Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A7S2XAZ6_9EUKA1.970e-2053.54Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0DP24_9EUKA2.580e-2050.00Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
W7TJU2_9STRA3.630e-2046.49Ubiquinone menaquinone biosynthesis methyltransfer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8689contigEcto-sp13_S_contig8689:262..1605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score151.4
Seed ortholog evalue3.1e-34
Seed eggNOG ortholog2880.D8LTT5
Model size411
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
EggNOG OGsCOG2226@1,KOG1540@2759
Cds size411
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.3042765-CDS-Ecto-sp13_S_contig8689:261..4351681464141.3042765-CDS-Ecto-sp13_S_contig8689:261..435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8689 262..435 -
1681464141.3173504-CDS-Ecto-sp13_S_contig8689:682..7391681464141.3173504-CDS-Ecto-sp13_S_contig8689:682..739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8689 683..739 -
1681464141.3287113-CDS-Ecto-sp13_S_contig8689:1425..16051681464141.3287113-CDS-Ecto-sp13_S_contig8689:1425..1605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8689 1426..1605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8689.20144.1prot_Ecto-sp13_S_contig8689.20144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8689 262..1605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8689.20144.1

>prot_Ecto-sp13_S_contig8689.20144.1 ID=prot_Ecto-sp13_S_contig8689.20144.1|Name=mRNA_Ecto-sp13_S_contig8689.20144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MKPCGATSTVLTAVAACVAYAIVLLGGQQQRSGSEGGGEYELGSGKMFDS
IAPRYDLINKVISLGLDMQWRRAMVRGLELRAGDRVVDMATGTADVAIMI
SEELTKLEVTPGDRETIPETVEPEVIGIDPSARMLEV
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mRNA from alignment at Ecto-sp13_S_contig8689:262..1605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8689.20144.1 ID=mRNA_Ecto-sp13_S_contig8689.20144.1|Name=mRNA_Ecto-sp13_S_contig8689.20144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1344bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8689:262..1605- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCATGCGGTGCGACGTCTACGGTGCTCACAGCGGTGGCCGCATG CGTGGCGTATGCTATCGTACTTTTGGGTGGGCAGCAGCAGCGGTCGGGGT CCGAGGGCGGCGGGGAGTATGAGCTCGGGTCGGGCAAGATGTTCGACTCT ATTGCTCCTCGGTACGACCTCATCAACAAGGTGCTCAACCGCACGGCTCA TGACGCCTGTTGGGTGTACACCAACACCATGTACGGTCACGCGGTATTGA ACGGCAGAAGTAGTGGTAGTAGAAGAGATTAATGTAGTGGTGGACAGCCT TACCAGGACAATGCGACCTTTGGCCGGTGGTACTGCTGCGCATATGCACC ATGATCATGAGGATCATGCGCACACCCGTCGTGTGCACATGTTTCCGTTC CTGCAACTGGTGCCTAGGGTGTCACGGCGGTGTGCTGTAGATGTAGCGCT GCCCAGGCCGTTTGGACCCATCGGCATTCCAGTTTCTATTCGGTCGGTAG CTACTATGATATCAAGCATGTGGAGGGCGGATGTCGCGTGAGGTGATTTG TCGCCGATGCACCTACCGGTGACTACGAAGCGCTGTTCGTCGAGAAAATG GGCTCGAAAGACATATCCATGTATCCACACACGGGGGATAAAGTATGCAG GGAAGGGTTAGACCACCACGGGTAGTTTTCTAGGAATGCGCGTATAGTGA CAAGCGTGTGGACTCCTGATATACCATCAAATGGCTCCCGTGATTCCCTC CTCACATCTAAACGCTCATCATCCATCCTTCCTTGGCCCATGGCTTGCGC GTACATGCTCGCTCGTTGCTCTCTGCTCTGTTAACCGTGTACTTCTGTCT CTTTTTGTCCAAACAGGTGATTTCCCTTGGGTTGGACATGCAATGGCGAA GAGCAATGGTTCGAGGTCTCGAGGTAAGAGGATGATCTTCGCAGTTGTCA GTCAGCGCTTTTGCTTGGTAGCAGGGAGCCAGGGCTATTTCGTACAGGGT GAATCACAACGACAAAGTTGCGGAACAGGGAGGGACAGCACCCCACAAGA AGAATAACCGTTACCATGAACGACAGCTACGGGGAGAGACTCGCACGTAT TCCGCTCACTGGAATCCTTCGTATTTTTCCTGCTTTGCTCTGCTGTGCCC ATTCTTGGCGCGAACACAAGCTGCGAGCTGGAGACCGAGTGGTAGACATG GCGACGGGGACGGCAGACGTCGCGATCATGATCTCCGAAGAACTGACCAA GCTGGAGGTGACCCCAGGCGACCGAGAAACGATCCCGGAAACGGTCGAAC CGGAGGTGATCGGAATCGACCCTAGTGCGAGGATGCTAGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8689:262..1605-

>mRNA_Ecto-sp13_S_contig8689.20144.1 ID=mRNA_Ecto-sp13_S_contig8689.20144.1|Name=mRNA_Ecto-sp13_S_contig8689.20144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8689:262..1605- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCATGCGGTGCGACGTCTACGGTGCTCACAGCGGTGGCCGCATG
CGTGGCGTATGCTATCGTACTTTTGGGTGGGCAGCAGCAGCGGTCGGGGT
CCGAGGGCGGCGGGGAGTATGAGCTCGGGTCGGGCAAGATGTTCGACTCT
ATTGCTCCTCGGTACGACCTCATCAACAAGGTGATTTCCCTTGGGTTGGA
CATGCAATGGCGAAGAGCAATGGTTCGAGGTCTCGAGCTGCGAGCTGGAG
ACCGAGTGGTAGACATGGCGACGGGGACGGCAGACGTCGCGATCATGATC
TCCGAAGAACTGACCAAGCTGGAGGTGACCCCAGGCGACCGAGAAACGAT
CCCGGAAACGGTCGAACCGGAGGTGATCGGAATCGACCCTAGTGCGAGGA
TGCTAGAGGTG
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