mRNA_Ecto-sp13_S_contig12426.2014.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12426.2014.1
Unique NamemRNA_Ecto-sp13_S_contig12426.2014.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12426.2014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12426contigEcto-sp13_S_contig12426:4491..5061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size215
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.6460366-CDS-Ecto-sp13_S_contig12426:4490..45351681462661.6460366-CDS-Ecto-sp13_S_contig12426:4490..4535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12426 4491..4535 +
1681462661.6620972-CDS-Ecto-sp13_S_contig12426:4892..50601681462661.6620972-CDS-Ecto-sp13_S_contig12426:4892..5060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12426 4893..5060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.6725156-UTR-Ecto-sp13_S_contig12426:5060..50611681462661.6725156-UTR-Ecto-sp13_S_contig12426:5060..5061Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12426 5061..5061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12426.2014.1prot_Ecto-sp13_S_contig12426.2014.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12426 4491..5060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12426.2014.1

>prot_Ecto-sp13_S_contig12426.2014.1 ID=prot_Ecto-sp13_S_contig12426.2014.1|Name=mRNA_Ecto-sp13_S_contig12426.2014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
LKASRFGDGISEFGWERVYLPNTNRNRRWYAKKPNERHCDDIPNTPHAGN
GHQQSASPAVPARHHSNYCF*
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mRNA from alignment at Ecto-sp13_S_contig12426:4491..5061+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12426.2014.1 ID=mRNA_Ecto-sp13_S_contig12426.2014.1|Name=mRNA_Ecto-sp13_S_contig12426.2014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12426:4491..5061+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGGCCTCGAGGTTTGGGGATGGGATAAGCGAGTTTGGGTGGGTAAG
CGGTGGGGGCGGGGGCGGTCGAGAGGTATAATGGTGGTCGTGAACGGTTC
ACGTCAAGGACGTGCAAAGCTGCCGACACGTACTCAACAGCAAACACCGG
TGGAAAATGCCTCTGGTTAATCTCTGAGCGACTTGTCCGCGAATGTCCTG
CTGTTTGTGCCGTTAAATTAAAGAGAGTATGTGTCACCCCAGCTGTACCG
GAAGGCTACGCAGCAGCGAGCGTGGATATACGACTTTTTGAGTAATCAGT
TGTACATAACAGCCAACGTAAGTACCAATGTGCGTACCTTGCAAAAAAAG
TTGCCTGGGGTAGTCATAGAGAACCCTTTGCTTTGCGCCCTGCCATTCGC
AGGAACGGGTGTACCTACCAAACACCAACCGTAACCGTCGCTGGTACGCA
AAAAAGCCAAACGAACGGCATTGTGATGACATCCCCAACACGCCGCACGC
GGGGAATGGACATCAGCAATCAGCATCACCAGCAGTGCCAGCCAGGCACC
ACAGCAACTACTGTTTCTGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12426:4491..5061+

>mRNA_Ecto-sp13_S_contig12426.2014.1 ID=mRNA_Ecto-sp13_S_contig12426.2014.1|Name=mRNA_Ecto-sp13_S_contig12426.2014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12426:4491..5061+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGGCCTCGAGGTTTGGGGATGGGATAAGCGAGTTTGGGTGGGAACG
GGTGTACCTACCAAACACCAACCGTAACCGTCGCTGGTACGCAAAAAAGC
CAAACGAACGGCATTGTGATGACATCCCCAACACGCCGCACGCGGGGAAT
GGACATCAGCAATCAGCATCACCAGCAGTGCCAGCCAGGCACCACAGCAA
CTACTGTTTCTGA
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