mRNA_Ecto-sp13_S_contig8684.20139.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8684.20139.1
Unique NamemRNA_Ecto-sp13_S_contig8684.20139.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8684.20139.1 vs. uniprot
Match: A0A6H5KKJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ4_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.030e-44
Identity = 116/145 (80.00%), Postives = 119/145 (82.07%), Query Frame = 1 
Query:  943 SSKIAAPAPAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKGESAASSATTQAEGALAATQSGVTAAEGEIDEVMARLSSGGGEAGGAGGAGEDGTRALPGGDATATAAADPYAQDPEDKKMFGTCKVPKVPDSCVIC 1377
            SSK AAPAPAA+GXXXXXXXXXXXX                     +KGESAASSATTQAEGALAATQSGVTAAEGEIDEVMA+L SGG EAGGAGGAGEDGTRALPGGDAT TAAADPYAQDPEDKKM GTCKVPKVPDSCVIC
Sbjct:  377 SSKFAAPAPAAKGXXXXXXXXXXXXAEEGGMGGFLSGIMSTVQDAVSKGESAASSATTQAEGALAATQSGVTAAEGEIDEVMAKLPSGGREAGGAGGAGEDGTRALPGGDATTTAAADPYAQDPEDKKMLGTCKVPKVPDSCVIC 521
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BLAST of mRNA_Ecto-sp13_S_contig8684.20139.1 vs. uniprot
Match: D7G8V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V5_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.920e-44
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 1 
Query: 1084 KGESAASSATTQAEGALAATQSGVTAAEGEIDEVMARLSSGGGEAGGAGGAGEDGTRALPGGDATATAAADPYAQDPEDKKMFGTCKVPKVPDSCVIC 1377
            KGESAASSATTQAEGALAATQSGVTAAEG+IDEVMA++ SGGGEAGGAGGAGEDGTRALPGGDATATAAADPYAQDPEDKKMFGTCKVPKVPDSC IC
Sbjct:  371 KGESAASSATTQAEGALAATQSGVTAAEGKIDEVMAKIPSGGGEAGGAGGAGEDGTRALPGGDATATAAADPYAQDPEDKKMFGTCKVPKVPDSCAIC 468
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8684.20139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKJ4_9PHAE1.030e-4480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8V5_ECTSI3.920e-4494.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8684contigEcto-sp13_S_contig8684:2..2732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1380
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004390.1
Cds size1380
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.0015597-CDS-Ecto-sp13_S_contig8684:1..1191681464141.0015597-CDS-Ecto-sp13_S_contig8684:1..119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8684 2..119 +
1681464141.0139651-CDS-Ecto-sp13_S_contig8684:969..19221681464141.0139651-CDS-Ecto-sp13_S_contig8684:969..1922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8684 970..1922 +
1681464141.025338-CDS-Ecto-sp13_S_contig8684:2423..27321681464141.025338-CDS-Ecto-sp13_S_contig8684:2423..2732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8684 2424..2732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8684.20139.1prot_Ecto-sp13_S_contig8684.20139.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8684 2..2732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8684.20139.1

>prot_Ecto-sp13_S_contig8684.20139.1 ID=prot_Ecto-sp13_S_contig8684.20139.1|Name=mRNA_Ecto-sp13_S_contig8684.20139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
SKLTEGVAAAASSVNKAVTDAAETATTSAADSASRTAATAAAAADTATSK
ATATADTAKSEAAAAAETANSEAAAVAETAESEAAAAAETANSEATAAAD
TATSEATAAAETAKSEATAAADTATSEATAAAETAKNEATAAADTATSEA
SAAAETAKSEATAAADTATSEATATADTATSEATAAADTATSEATAAADT
ATSEATAAADTATSEATAAADTATSEATAAADTATSEATAAASTAESDAT
AAATEATSAASTAAAGIVSQAQGLVDATEATLGSGMATAEGALGSMKTSL
GAITSQVDTALSSVSSKIAAPAPAAEGAADASASETASPAKGGGMGGFLS
GIMSTVQDAVTKGESAASSATTQAEGALAATQSGVTAAEGEIDEVMARLS
SGGGEAGGAGGAGEDGTRALPGGDATATAAADPYAQDPEDKKMFGTCKVP
KVPDSCVIC*
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mRNA from alignment at Ecto-sp13_S_contig8684:2..2732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8684.20139.1 ID=mRNA_Ecto-sp13_S_contig8684.20139.1|Name=mRNA_Ecto-sp13_S_contig8684.20139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2731bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8684:2..2732+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAAGTTAACGGAGGGCGTCGCCGCCGCTGCGAGCAGTGTCAACAAGGC
GGTGACCGATGCCGCCGAGACGGCCACCACTTCCGCTGCCGACTCGGCGT
CGCGCACCGCTGCCACCGGTGAGCATATTTGTTGAGACGGCGCCAGAACC
CCGGTCGGCGTCCTGCGTTTGCATGCAAGCATCGGATGATATTTTTTTGC
AAGAGCCATTTTTATGAAATTGAGACTGCGCCCGAACCGCGTCGGCGTCC
TTACGACTTCGGCTGTAGTTTGCGAGGAACTGATGACTATTGTCGCCATA
GCCACCCACTCTTGAAATGTTGATGTTTGGGACATATGATGCCCTCCTAC
TCGCCCCCCCCCGTCTTAAAAGTGATGTGTGGGGGGGTTCCGGTAGTTCA
CTGATCGCAGTCAGTCAATCGCTGCTCAGATCACGGATGGACAGTGCTTT
GTTGGGGTGTGCAAAGCAGGTCATACGAACGAAAATCTTACACTCCTGAT
GTTTTGCTGCCCCAAAATATGGCCAAGCTCACTCATGCAAGTCATCGTTG
TAGCCATTGTAATCCCGCTGCTTGGACAAGAATCACACGGGCTTGCACCT
TTCCCCTTATGCGAGCAAACCACACGCCAATGTGGTAAGGACTTTTTGCT
CGTTAGCGCATCGTTTTGTCTACATGGATTGCTCCGCACGCGTAGCTCAT
TTCGTGTGGCGGCCCTCCCTCCAACTAACAAGCCGTGTCTTCCGTGTCAT
GGGTGTAATCGGCGGGACAGGGTAGGAAAGCTCATGACCAATAATGTTCG
CATGGCTCGTAGCGTTACCGTACCTAACCACAATTCAATATCTCGTATTC
ATGGTTTGTACCACAACAGCAAAGAGAGCGGTCGCTTCGGCGACGGAAGC
GGCAACCGCCGCCGCCGACACCGCGACGAGCGAAGCTGCCGCCGCCGTTG
AGACCGCGACGAGCGAAGCTGCTGCCGCCGCTGACACCGCGACGAGTAAA
GCCACAGCCACCGCTGACACCGCAAAGAGCGAAGCTGCCGCCGCCGCTGA
GACCGCAAACAGCGAAGCTGCCGCCGTCGCTGAGACCGCGGAGAGCGAAG
CTGCCGCCGCCGCTGAGACCGCAAACAGCGAAGCTACTGCCGCCGCTGAT
ACCGCGACGAGCGAAGCTACCGCCGCCGCTGAGACCGCAAAGAGCGAAGC
TACTGCCGCCGCTGACACGGCAACGAGCGAAGCTACCGCCGCCGCTGAGA
CCGCAAAGAACGAAGCTACTGCCGCCGCTGACACCGCGACGAGCGAAGCT
TCCGCCGCCGCTGAGACCGCAAAGAGCGAAGCTACTGCCGCCGCTGATAC
CGCGACGAGCGAAGCTACCGCCACCGCTGATACAGCGACGAGCGAAGCTA
CTGCCGCCGCTGATACCGCGACGAGCGAAGCTACCGCCGCCGCTGATACA
GCGACGAGCGAAGCTACTGCCGCCGCTGATACCGCGACGAGCGAAGCTAC
CGCCGCCGCTGACACCGCGACGAGCGAAGCTACCGCCGCCGCTGACACCG
CGACGAGCGAAGCTACCGCCGCCGCATCCACGGCGGAGAGCGACGCCACG
GCAGCCGCGACGGAGGCCACCTCCGCCGCCTCGACCGCCGCCGCGGGCAT
CGTGTCGCAGGCCCAGGGGCTCGTGGACGCAACGGAGGCCACTCTCGGGT
CCGGCATGGCGACCGCGGAGGGAGCGTTGGGGAGCATGAAGACCTCGCTC
GGCGCCATCACGTCGCAGGTCGACACGGCCCTCAGCTCCGTTAGCTCCAA
AATTGCTGCTCCCGCTCCCGCTGCCGAGGGCGCCGCCGACGCCTCGGCGT
CGGAGACGGCGTCCCCCGCTAAGGGAGGAGGGATGGGAGGCTTCTTGTCC
GGCATCATGTCAACCGTCCAGGTGGGCTATTTTTGTGGTACACTGCTGTC
GTAACTGAGAGAGCGGCAAGTTTGGTTATAGGTTTCTTGTCTTTGTCGAG
CCGGGCTGGGACAGACCGCTTTGTTTTGTGTGTGTGCTTGGCCAGGACGA
GAAGTGGAGAACAACTCGCGAAATCGTGCCGCACGTTTTTCGTGTCCCGT
CCACCAATTCACGGTGGTGAAACAGAACTGGGGAACAACCCCCGAAATCA
CACGCTGCACATTTTTTTCCATATCCCGTCGACCGATCACGGTGGTGAAA
GAAATGCGGAAAAAATCCCGGAATCACGCCGCATGTTTTGGCGTCCCGTC
AACCAATTCACGGTCCCGTTTTTTTTTCTGGCGGTAGCGGTACTTGGTGG
TTATGCCCGTTGTTCTGTCCAACGTGTCAATGTTTCTGGGTTCCGCCAGC
GAGCGGGCGCCCCGTCGGTTTCCGCTCCCTTGCACGAACGCGAAATCGCG
TGTTTTGCTATCATTTTCCCAGGACGCGGTTACGAAAGGGGAAAGCGCGG
CGTCTTCCGCGACCACCCAGGCGGAGGGCGCGCTGGCCGCGACACAGTCG
GGCGTCACCGCTGCCGAGGGGGAGATCGACGAGGTCATGGCCAGGCTTTC
CAGCGGGGGCGGCGAGGCGGGGGGCGCCGGCGGCGCCGGCGAGGACGGCA
CGCGCGCCCTGCCCGGGGGCGATGCCACCGCTACCGCTGCCGCTGACCCG
TACGCCCAGGACCCGGAGGACAAGAAGATGTTCGGGACGTGTAAGGTGCC
CAAGGTACCGGACTCTTGCGTGATCTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8684:2..2732+

>mRNA_Ecto-sp13_S_contig8684.20139.1 ID=mRNA_Ecto-sp13_S_contig8684.20139.1|Name=mRNA_Ecto-sp13_S_contig8684.20139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8684:2..2732+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAAGTTAACGGAGGGCGTCGCCGCCGCTGCGAGCAGTGTCAACAAGGC
GGTGACCGATGCCGCCGAGACGGCCACCACTTCCGCTGCCGACTCGGCGT
CGCGCACCGCTGCCACCGCTGCTGCCGCCGCTGACACCGCGACGAGTAAA
GCCACAGCCACCGCTGACACCGCAAAGAGCGAAGCTGCCGCCGCCGCTGA
GACCGCAAACAGCGAAGCTGCCGCCGTCGCTGAGACCGCGGAGAGCGAAG
CTGCCGCCGCCGCTGAGACCGCAAACAGCGAAGCTACTGCCGCCGCTGAT
ACCGCGACGAGCGAAGCTACCGCCGCCGCTGAGACCGCAAAGAGCGAAGC
TACTGCCGCCGCTGACACGGCAACGAGCGAAGCTACCGCCGCCGCTGAGA
CCGCAAAGAACGAAGCTACTGCCGCCGCTGACACCGCGACGAGCGAAGCT
TCCGCCGCCGCTGAGACCGCAAAGAGCGAAGCTACTGCCGCCGCTGATAC
CGCGACGAGCGAAGCTACCGCCACCGCTGATACAGCGACGAGCGAAGCTA
CTGCCGCCGCTGATACCGCGACGAGCGAAGCTACCGCCGCCGCTGATACA
GCGACGAGCGAAGCTACTGCCGCCGCTGATACCGCGACGAGCGAAGCTAC
CGCCGCCGCTGACACCGCGACGAGCGAAGCTACCGCCGCCGCTGACACCG
CGACGAGCGAAGCTACCGCCGCCGCATCCACGGCGGAGAGCGACGCCACG
GCAGCCGCGACGGAGGCCACCTCCGCCGCCTCGACCGCCGCCGCGGGCAT
CGTGTCGCAGGCCCAGGGGCTCGTGGACGCAACGGAGGCCACTCTCGGGT
CCGGCATGGCGACCGCGGAGGGAGCGTTGGGGAGCATGAAGACCTCGCTC
GGCGCCATCACGTCGCAGGTCGACACGGCCCTCAGCTCCGTTAGCTCCAA
AATTGCTGCTCCCGCTCCCGCTGCCGAGGGCGCCGCCGACGCCTCGGCGT
CGGAGACGGCGTCCCCCGCTAAGGGAGGAGGGATGGGAGGCTTCTTGTCC
GGCATCATGTCAACCGTCCAGGACGCGGTTACGAAAGGGGAAAGCGCGGC
GTCTTCCGCGACCACCCAGGCGGAGGGCGCGCTGGCCGCGACACAGTCGG
GCGTCACCGCTGCCGAGGGGGAGATCGACGAGGTCATGGCCAGGCTTTCC
AGCGGGGGCGGCGAGGCGGGGGGCGCCGGCGGCGCCGGCGAGGACGGCAC
GCGCGCCCTGCCCGGGGGCGATGCCACCGCTACCGCTGCCGCTGACCCGT
ACGCCCAGGACCCGGAGGACAAGAAGATGTTCGGGACGTGTAAGGTGCCC
AAGGTACCGGACTCTTGCGTGATCTGCTGA
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