mRNA_Ecto-sp13_S_contig8681.20136.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Match: A0A6H5JIZ6_9PHAE (Carrier domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ6_9PHAE) HSP 1 Score: 365 bits (936), Expect = 2.930e-112 Identity = 210/251 (83.67%), Postives = 220/251 (87.65%), Query Frame = 2
Query: 2 LLLAPRANVKTTSGKIARHWCRRAFLEGKMKPLVHLKSAKVDDSNGGAGASGAEEKTEASASSGIPATAGAGGAA--ATGGRVASGVAGAGVEDATSNAAQAPHPTVNPSSLGDGELLSRVQEAVTKVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVSLIKAEGGAGEGAPVTGPSSQGAATAAGGAAVAGVASSQTMVREPTGKCEDTITNSCPCCLCLLSXXXXM 748
LLLAPRANVKTTSGKIAR WCRRAFL+GKMKPLVHL+SAKVD SN AGASG+E KTEAS SSGIPATA ATG R SGVA AGVE AT++AAQAPHP V+PSSLG+ ELL RVQEAVTKVGGGA PDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLV ++KAEG GEGAP TGPS QGA TAAGG AVAGVASSQTMVREP GKCEDT+TNSCPCCLCLLSXXXXM
Sbjct: 764 LLLAPRANVKTTSGKIARQWCRRAFLQGKMKPLVHLESAKVDGSNVSAGASGSEAKTEASVSSGIPATAXXXXXXXXATGERGVSGVASAGVEGATTDAAQAPHPIVDPSSLGEEELLRRVQEAVTKVGGGAQPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVPIVKAEGRGGEGAPATGPSGQGAETAAGGTAVAGVASSQTMVREPIGKCEDTVTNSCPCCLCLLSXXXXM 1014
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Match: D7G6K2_ECTSI (Carrier domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K2_ECTSI) HSP 1 Score: 335 bits (858), Expect = 2.030e-101 Identity = 192/249 (77.11%), Postives = 196/249 (78.71%), Query Frame = 2
Query: 2 LLLAPRANVKTTSGKIARHWCRRAFLEGKMKPLVHLKSAKVDDSNGGAGASGAEEKTEASASSGIPATAGAGGAAATGGRVASGVAGAGVEDATSNAAQAPHPTVNPSSLGDGELLSRVQEAVTKVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVSLIKAEGGAGEGAPVTGPSSQGAATAAGGAAVAGVASSQTMVREPTGKCEDTITNSCPCCLCLLSXXXXM 748
LLLAPRANVKTTSGKIAR WCRRAFL+ KMKPLVHLKSAKVDDSNGG GASG EE+ EA PHPTV+PSSLGD ELLSRVQEAVTKVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLV +IKAEG GEGAP TGPS QGA TAAGGAAVAGVASSQTMVREPTGKCEDTITNSCPCCLCLLSXXXXM
Sbjct: 744 LLLAPRANVKTTSGKIARQWCRRAFLQAKMKPLVHLKSAKVDDSNGGPGASGGEERMEA-----------------------------------------PHPTVDPSSLGDEELLSRVQEAVTKVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVPIIKAEG-RGEGAPATGPSGQGAVTAAGGAAVAGVASSQTMVREPTGKCEDTITNSCPCCLCLLSXXXXM 950
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Match: A0A836C841_9STRA (Carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C841_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.050e-24 Identity = 90/243 (37.04%), Postives = 119/243 (48.97%), Query Frame = 2
Query: 2 LLLAPRANVKTTSGKIARHWCRRAFLEGKMKPLVHLKSAKVDDSNGGAGASGAEEKTEASASSGIPATAGAGGAAATGGRVASGVAGAGVEDATSNAAQAPHPTVNPSSLGDGELLSRVQEAVTKVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVSLIKAEGGAGEGAPVTGPSSQGAATAAGGAAVAGVASSQTMVREPTGKCEDTITNSCPCCLCLL 730
LL+A RAN KTTSGKIAR WC+RA+L G + PL ++ D + G GA PA AG GG + A + D AP V+ S L D EL R+ +T++ GA PD P + LGL S++ Q SG+LEQ++ A VP+ VL ++ TL +L L++ G G+G GG A R+ G CE +TNSCPCCLCLL
Sbjct: 456 LLVASRANSKTTSGKIARQWCKRAYLAGSLAPLYERGTSSEDQGDAGEGAP--------------PADAGGGG-----------IEMAHMRDVDIGGG-AP---VDVSMLSDDELQQRIAAILTQLAQGAPVPPDRPLHELGLDSLSMGQLSGVLEQDFNAKVPVEVLYSEEMTLPALAQLVRDGGFKGQGG--------------GGGA-----------RDGKGSCETWLTNSCPCCLCLL 644
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Match: A0A7R9ZPQ1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZPQ1_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.580e-6 Identity = 61/202 (30.20%), Postives = 90/202 (44.55%), Query Frame = 2
Query: 2 LLLAPRANVKTTSGKIARHWCRRAFLEGKMKPLVHLK---SAKV--DDSNGGAGASGAEEKTEASASSGIPATAGAGGAAATGGRVASGVAGAGVEDATSNAAQAPHPTVNPSSLGDGELLSRVQEAVTKVGGGALP----DPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVSLIKAEGGAGEGAP 580
+LL PR KT+SGKIAR WCR+AFL+ +K +V+ K K+ DD N G + A + +AS + I A L E+L R++ V+K+ ALP D + T+ L S++ +QF G++E YGA V + ++T L+ L +IK G GE P
Sbjct: 53 VLLQPRTVPKTSSGKIARAWCRKAFLQNTLK-IVYQKRFIDGKISGDDENDGVVMATAPKALDASGVAAIRA------------------------------------------LSHKEILKRLKTDVSKIT--ALPPDSIDANAALVTI-LDSLSLSQFKGIVEGSYGARVADEFMFEESTNLKKLAEIIKG-GKGGEATP 207
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Match: A0A1Z5KT37_FISSO (AMP-binding domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT37_FISSO) HSP 1 Score: 62.0 bits (149), Expect = 1.860e-6 Identity = 54/183 (29.51%), Postives = 81/183 (44.26%), Query Frame = 2
Query: 2 LLLAPRANVKTTSGKIARHWCRRAFLEGKMKPLVHLKSAKVDDSNGGAGASGAEEKTEASASSGIPATAGAGGAAATGGRVASGVAGAGVEDATSNAAQAPHPTVNPSSLGDGELLSRVQEAVTKVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVSLIK 550
+L+ P+ KT+SGKIAR WCR+AF+ ++ +VH KS +V++ E T G P TA G TS S+ E+L+++Q V KV G D + S+T +QF G+LE YG + L ++TTL+ LV ++K
Sbjct: 540 ILIKPKTVPKTSSGKIARAWCRKAFIANTLQ-VVHRKSFRVNN-----------EGTSPFEIDGPPKTAN------------------GTTRITSE-----QDIAILRSMSKAEILAKLQSDVDKVAGPLSVDKTTSLVNF-MDSVTLSQFKGMLENSYGVKLSDEYLFRESTTLQKLVEVVK 686
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Match: A0A7S2HQ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ97_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.790e-5 Identity = 52/187 (27.81%), Postives = 77/187 (41.18%), Query Frame = 2
Query: 5 LLAPRANVKTTSGKIARHWCRRAFLEGKMKPLVHLKSAKVDDSNGGAGASGAEEKTEASASSGIPATAGAGGAAATGGRVASGVAGAGVEDATSNAAQAPHPTVNPSSLGDGELLSRVQEAVT-----KVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVSLIK 550
LL PR KTTSGKIAR WC+RA G ++ + D + A A+ EK + A+ PA A V+ + D ++L+ V E V + D + P +LGL+SM Q LLE + G +P +L + TTL +L+ +I+
Sbjct: 582 LLKPRTVEKTTSGKIARQWCKRALKNGTLQSIFEWFDDSADSAEKDASAA---EKEQQPAAENRPALA-----------------------------------VSLEEMTDDDILNAVVETVAVDVLKTSTESIMEDVNKPITSLGLNSMEGMQMLSLLEGKLGTSIPQEILFEEETTLLNLIPVIR 730
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Match: A0A7S2HQA0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQA0_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.960e-5 Identity = 52/187 (27.81%), Postives = 77/187 (41.18%), Query Frame = 2
Query: 5 LLAPRANVKTTSGKIARHWCRRAFLEGKMKPLVHLKSAKVDDSNGGAGASGAEEKTEASASSGIPATAGAGGAAATGGRVASGVAGAGVEDATSNAAQAPHPTVNPSSLGDGELLSRVQEAVT-----KVGGGALPDPDVPFYTLGLSSMTAAQFSGLLEQEYGAHVPLSVLDADTTTLRSLVSLIK 550
LL PR KTTSGKIAR WC+RA G ++ + D + A A+ EK + A+ PA A V+ + D ++L+ V E V + D + P +LGL+SM Q LLE + G +P +L + TTL +L+ +I+
Sbjct: 582 LLKPRTVEKTTSGKIARQWCKRALKNGTLQSIFEWFDDSADSAEKDASAA---EKEQQPAAENRPALA-----------------------------------VSLEEMTDDDILNAVVETVAVDVLKTSTESIMEDVNKPITSLGLNSMEGMQMLSLLEGKLGTSIPQEILFEEETTLLNLIPVIR 730 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8681.20136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8681.20136.1 >prot_Ecto-sp13_S_contig8681.20136.1 ID=prot_Ecto-sp13_S_contig8681.20136.1|Name=mRNA_Ecto-sp13_S_contig8681.20136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp MKPLVHLKSAKVDDSNGGAGASGAEEKTEASASSGIPATAGAGGAAATGGback to top mRNA from alignment at Ecto-sp13_S_contig8681:3695..6658- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8681.20136.1 ID=mRNA_Ecto-sp13_S_contig8681.20136.1|Name=mRNA_Ecto-sp13_S_contig8681.20136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2964bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8681:3695..6658- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8681:3695..6658- >mRNA_Ecto-sp13_S_contig8681.20136.1 ID=mRNA_Ecto-sp13_S_contig8681.20136.1|Name=mRNA_Ecto-sp13_S_contig8681.20136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8681:3695..6658- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |