mRNA_Ecto-sp13_S_contig868.20133.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig868.20133.1
Unique NamemRNA_Ecto-sp13_S_contig868.20133.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig868.20133.1 vs. uniprot
Match: A0A6H5JMD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMD5_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 8.660e-100
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 1 
Query:    1 MFTLNANAPSFVPSNPVQQQMVRPIFNSGVPSCVLIIDSDEYRSEFLINTFNREAVADEDLFNPAVYPVSAADHEELAAAENFNREMAELEALEHQEELRSLLQARISALQQGTSGNQRPAKIASMNSAMFSGLSRGAPASGLKGKRFNPAKKCPHNINQPLETGRYY 504
            MFTLNANAPSFVPSNPV QQMVRPIFNSGVPSCVLI+DSDEYRSEFL+NTFNREAVADEDLFNPAVYPVSAADHEEL AAENFNREMAELEALEHQEELRSLLQARISALQQGTSG QRPAKIASMNSAMFSGLSRGAPASGLKGKRFNPAKKCPHNINQPLETGRYY
Sbjct:    1 MFTLNANAPSFVPSNPVHQQMVRPIFNSGVPSCVLILDSDEYRSEFLVNTFNREAVADEDLFNPAVYPVSAADHEELTAAENFNREMAELEALEHQEELRSLLQARISALQQGTSGKQRPAKIASMNSAMFSGLSRGAPASGLKGKRFNPAKKCPHNINQPLETGRYY 168
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BLAST of mRNA_Ecto-sp13_S_contig868.20133.1 vs. uniprot
Match: A0A835Z899_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z899_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.840e-5
Identity = 50/157 (31.85%), Postives = 66/157 (42.04%), Query Frame = 1 
Query:   10 LNANAPSFVPSNPVQQQMVRPIFNSGVPSCVLIIDSDEYRSEFLINTFNREAVADEDLFNPAVYPVSAADHEELAAAENFNREMAELEALEHQEELRSLLQARISALQQGT----SGNQRPAKIASMNSAMFSGLSRGAPASGLKGKRFNPAKKCPH 468
            LN NA  +VP          PIFN  + SCV++         F    F+R  V D DLFNPA +P+  AD  E+ A E  N E+A          L  LL  R+ AL++         Q PA  A         L  GA  +    +  N A++ PH
Sbjct:    2 LNPNAQEYVPP--------MPIFNGDLQSCVIL--------GFQGQMFDRNMVDDNDLFNPAAFPMQDADFLEIEATEEMNAELAXXXXXXXXXXLTELLHKRLEALRRARLRRFGAEQTPAPRAXXXXXXXXXL--GATDAVAVSRHANNARRAPH 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig868.20133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMD5_9PHAE8.660e-10097.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z899_9STRA1.840e-531.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig868contigEcto-sp13_S_contig868:11884..17790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3084
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006490.1
Cds size507
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig868.20133.1prot_Ecto-sp13_S_contig868.20133.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig868 11884..15200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464140.4814298-CDS-Ecto-sp13_S_contig868:11883..120651681464140.4814298-CDS-Ecto-sp13_S_contig868:11883..12065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 11884..12065 +
1681464140.4959376-CDS-Ecto-sp13_S_contig868:12249..122841681464140.4959376-CDS-Ecto-sp13_S_contig868:12249..12284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 12250..12284 +
1681464140.5126636-CDS-Ecto-sp13_S_contig868:12513..126211681464140.5126636-CDS-Ecto-sp13_S_contig868:12513..12621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 12514..12621 +
1681464140.5229683-CDS-Ecto-sp13_S_contig868:13527..136341681464140.5229683-CDS-Ecto-sp13_S_contig868:13527..13634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 13528..13634 +
1681464140.5368118-CDS-Ecto-sp13_S_contig868:15125..152001681464140.5368118-CDS-Ecto-sp13_S_contig868:15125..15200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig868 15126..15200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464140.5630503-UTR-Ecto-sp13_S_contig868:15200..174361681464140.5630503-UTR-Ecto-sp13_S_contig868:15200..17436Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig868 15201..17436 +
1681464140.5741298-UTR-Ecto-sp13_S_contig868:17449..177901681464140.5741298-UTR-Ecto-sp13_S_contig868:17449..17790Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig868 17450..17790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig868.20133.1

>prot_Ecto-sp13_S_contig868.20133.1 ID=prot_Ecto-sp13_S_contig868.20133.1|Name=mRNA_Ecto-sp13_S_contig868.20133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MFTLNANAPSFVPSNPVQQQMVRPIFNSGVPSCVLIIDSDEYRSEFLINT
FNREAVADEDLFNPAVYPVSAADHEELAAAENFNREMAELEALEHQEELR
SLLQARISALQQGTSGNQRPAKIASMNSAMFSGLSRGAPASGLKGKRFNP
AKKCPHNINQPLETGRYY*
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mRNA from alignment at Ecto-sp13_S_contig868:11884..17790+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig868.20133.1 ID=mRNA_Ecto-sp13_S_contig868.20133.1|Name=mRNA_Ecto-sp13_S_contig868.20133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig868:11884..17790+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCACCCTCAACGCAAACGCTCCGAGCTTCGTGCCAAGCAACCCAGT
TCAGCAGCAGATGGTCCGACCTATCTTCAACTCCGGCGTTCCTTCGTGTG
TGCTAATCATCGACAGCGACGAGTACCGCTCCGAGTTCCTGATCAACACC
TTCAACCGCGAGGCAGTGGCCGATGAGGACCTGTGAGTGGTCTAGCGCCG
CGTAGGGGCCGCGCTTCCGTCGATATCGATTGCGCAATTCCTCCGATCCC
AAGCTCAACAGATTGTACCCCCAGCCTTCGGTTGATCTTTACTGCCGGCT
TCTTTCCTCTGTGTGCTGTACCTCGTATCTGCTGCCTGCCTCTCCTTCTC
TCGCCGGCCTCTTCAGGTTTAATCCGGCGGTGTACCCTGTCTCAGCAGCA
GGTGGGAATCGCATCTCGTCTATGATAAGCTAGCTGTTTCTATTCTCCAA
GAAAAGCACGTCGGCCGACCAGGGTGTTGTTCATATTTGTTGCGAAGTCC
AGATATTCCATCCAAGGCAACATGCTCGAAAAAAATTTGCGCGCTGCCTC
GTGTGCCTCGCGAACTATTTTGCTGTCTGTCGCTCAAGGGACGCATGCCC
TACCTGCACGACTCCTTCTTACCCATACAGACCACGAAGAGCTAGCGGCT
GCTGAGAACTTCAACAGAGAAATGGCCGAGCTTGAAGCGCTCGAGCACCA
GGAGGAGCTGAGGTCGCTGCTTCAAGCCCGGATTTCGGGTGAGAGAGCCA
TGGCGGGAAAAAACAGCCTAAAGATCCTCTTTTCGTGTCCGGAAGACGAC
GCGTGGCACGAGAGCACTACCCTTTTGCCTGATTTGCGCTTTCCCCTCCC
CCTGCCCCCCCCCCCCTCCTCGGCTCCGGGCGCGCGCGCGCATGGGTGTG
TGTGTCGGGCCAGTAGAGTAGGGTAGGATGAGGGGTTTTGTTCGCAGCAC
ATCTTGTTCAATAGCGGATATCTTTGCCCCAAGTTCACGCAAGATATGTC
CTCTCTCCCTATACAGATGCCTTCCGACTGTCCTCTCTGTTTCTGTTTTT
CCCCGTGTTTGGGCGGGGTGTTTTAGGTACTCTTGCCTTTCATGCATCAG
CAGCAGCAGTAGCAGTAGCAGCACGCGCGTCGACCAAGGTGGTGAATGAA
ATCGTCCTGGGTAACTGCGGGTTACTTTTGACCCACATCAGATACAATTA
TGCAGCTAGAAAAGACCGCCTGTGTGATGCAGATCACGTGAATTATACAA
GTCTACAACAGCCGCCCACATTCTTATTTGCCAGAAAGTTCCGTCCGTGA
GGTTTGCGGAATGCACGACCGACACGTGAGTGCCGGCTGCCGCTGCTGCC
TTTCCCCCGGGGCCTCCTCGCGAATGACGGGGGTTTCCGGTGCATGTTCA
CTAATTGCGAGGACGTGCCACACCGCACGCCTGGTGCGAGGCGTTCCGTT
ACTTGCTGCCTACGGTACTGCTTGGCTCTCGACAATGCAATGATGGGCGT
GTGCATTTCTTGCCGACCTTGGTCCCCCTTTCAAATGGATCAATGAATGC
TTTTTCGATGCCCACTCTTTATCCTATGCGACGCAACTGATTATGAGTTT
GGTCTACTGTGTGTTGTGTGCTGCTGTGCGCAATGCAAGCACAGCTCTCC
AGCAAGGAACAAGCGGCAACCAGCGGCCGGCGAAGATCGCTTCCATGAAC
AGCGCCATGTTCTCTGGGCTATCCAGAGGTGCACCGGCATCGGGACTGAA
GGTATGTACTTGTGCATACAGTGGATGAAAGTGTGTCGAACATCCAAAGA
CAGATGTGATGGAAGTGTACCTGAATCTCCGGAATGCGGGTACCTCTGAA
TCAATCAATTTTTGGGGTGCCTGTGGGCACGAAGGAAGGAATGACGGTCT
GGCCGAAACCTCAACGTTCGAGAAAACTTGAGGACACTGCGTTCACCTTC
ACCGCCTTAATGGAATAAAGTGAAAGGGGCGCAACGACCAAACCACGATT
AGTACAGGATAGGCAATTGTGTCATAACATGGTAATGTTTGATCCTTTTG
ATCGGTGTTTTGTTCCAATCCACACAGACAGGTACACTTGCTAGGTGACC
TTTTCCGTTGAAGTGTAGTACTGGTTGTTGTCTTGTCCAAAGTAGCGCCA
TGTGTGTCAAGGGTAAAAGCCGCCAGTTGCTGAGAGTTCCGTTCGCCGAA
GTCTATCTGGTTGGCATGTTGTGATTGAAATGCTACAACATAACTATTAT
TGCTGTATTCATCTACACAGCCATAGTTGCAGCACTTCGTTCTCACACCC
AACATGGGGTGTTGAAAATTAACCGCATTCTGACGCCTTCGTATGTAAAT
CTCGTGCCATGCTGCGATTCCAAAAAGTAGGAAAAATGCCTTGTTGTAGC
GCATGAGTTGGCTCTTGCACGTTCGCGTTGAAAGTCTTGATATGCCTATG
CCTGCTGGTAGGATTTTCAGCGACGATAGCAGCTGAGGCAAGCACGTGCC
GCCGCATCACGGACTAAAAAGATGTCGAAATCATAGGCCCGGAAGTGGTT
CCGTGGACGAAAACAAATTGCCTTCAAAAGAAACTCGAAGAGGGTGCCCA
CCACCCACTTGCGACAAGCCAACACCTGTCCCAACCCTAACGAGACGGAA
CTGCAAAGAGTGCGGTATTCGACAGTGTTGCATACTTTTGTCTTTGTTTC
TTGGCGCGGAGCGCCTCCTGCTGGACACACGCATGGGCACGCACGTCTTT
TGCCAACAAGTGCAAACAAACACTACTGTACCTAAAACGCTCTTTTCCAC
GACGAGACTCGCGTGAGGGTGTACCGAGCACCAAGCGTCGTTTTGTGGAG
ATCGATGCAGTGACGCCACCTCCCCTTGCAAGATTCGGCACTTGGTTGCC
TCGGACACTTGGCGCTGTCAAGAAGATTGTTGCCGTTCGCCAGCGCGGTG
GAACTTGACTTTGTTTTGTTTTGTTCCGAGTAAGCGTTACGGAATGTTCA
ATTCGACGTCAGCAGTAGCATGTGTCTGGTTTATTTCATAAGCGATGCCA
CGCCTTTTTCTGCTGGTCGCTCCTCTGCCTGTGCTGTAACAACAGTGTGA
TTGTTTCAAGGCCGTCCTCCACCATCGTTTACCATGTGCACGTGATTCTA
TGGACATCGATTTCATGTATACCATGTCAAGCTAAGCTTTGCCCCTTCCT
TGCTTGCCTTCTTTCGCACAACCCTTGTGCACTCATGACCAGGGAAAGCG
CTTCAACCCTGCCAAGAAGTGCCCTCACAACATCAACCAGCCGCTTGAAA
CAGGCCGCTATTACTAATGGCAGCAGCTCGACGGCCACCCGACAATGTAA
TCTTCTCTCGAGTAAGTAAGTATAATGCGTAATGCTAGTAATGTATCCTA
CGGCGCACCGTCCGTGGCTCCCTCGTAAAATACAGTAGTAGCTGAGGTTC
TCCGCACCGACTCGATGTGGGCGGACGTTTTCGAAGTGATTCGTCAAAGG
GAGTGCTTCGTTAATCATCAGGAGGACAGGGCGGAGTTCTTGCTTGGGGA
CTGTCCTGTCTGCTGTGCGCCCTCAGCCCTCCGCCGTCTACCGCACGCAC
GGTAGCGGCGTGACGTGGCATGGCATGGCATGGCATGGCACGGCATGGTA
GCGATGGACGCGAAGGCCAGGTTAGGCTAGTTTACTTTGGTGCAGTGCCG
TGTGCCGTGGTCGAATTCCCATGCCTGAACGAATGGGTCGTCTGTGGTGA
CGGTGTAGCTTGTATATCCAGATTACCAATACCACGAAAACGGTGGATGT
GGAGGGGAGCGGACCGGCGACACTAGTAGTTAATACAGCACAACGGATTT
GGAACTAAGTGGCCGCAGGGAAACATACTCAAGTACGCAGGGAGGGGTGT
TGATAAGGGTAAGAAGGGTTAACGATGATGGGGTTAATGTGAGCATGTGA
TCATGAAGCTGAATACCAAAGTATATACAAAAGACAAAGGACGGGGCATG
AGAGGGGAGGGACAGGGGTGGAGTAAGAGGCTGCAGACATGTATTTGTGG
ATATGGTGCTGTTGACCATTTCAGGAGTATTATTTCATGTAATTTACTGC
AGTGAAGGTGACAGTGGTGGCGCGGGATAAATATACCCGACCCGATCCCA
ATGATCCCAATACCTATCGTGACTGTTCCAAGTGTTGGTAGAGCGAAGAT
TGGGGTGGGCAAGGAGGCTACTAGACACACAAAAGGACCATGGCTGTTTC
CTTGCTATATATCGGTTGCTGTAGACGGCAAGGGAAGAGAGACGTCTGTA
CGGCCGTGTAGTGTCGCTCTCCCGAAGAGGCATCTATCTGTCAAGAAGTC
GGTTTCGTAGCGGCTCAGAGTCATTAGTACAGCAGCCGCAGTGCTTGGCG
CCATCCTTGTTGTACACGTAGATGCCTTTATTTTTTAGGGTTGTACCGAT
GAGACAGCAGCGTAAAATTACCGTTGGCTGCGTGCTCGTCATCCCAAGAG
ATGCGCACGAAGGAGGTCGAGTCGGTGCGATAGTCTATGCATACAAAAGG
CAAGAAATCTGAAACCCGTAGTGTTGCGATATGCCTGTTCTTAAAAGTAC
GGTTAGATGTGTAGCTTTCGGTGTTGTTCTGTCCGTTGACACGTGTTGAG
TTACAAGTAAGACTTTGACTGTTCCGTGATATCCTGGCATCTCAGGGTCC
ACTGTGCGTTACTGGCTTGGCTAGCTCAGTGATAGATAGTGACACAAGAG
TGCGAAGGGTGCGGTTGGATATGTTCCCCGCTCTAAGTAATGACTACCCG
TGGTGGATTATGATTTTTCATGGTACGCACGGTGGTGTCGCGATTTCAGC
AGTGCACGTTTGTACCAACTGTGTGTGCATGATGACTGTATGATCCGTGG
TAGCCGAGGCAAGGGACATGATCTGTCTTGAAACGTAGCTCCAGCAGGGT
GGGGTTGGAGAAAGGACACCACAATGAAGGCTGCCATGTTGTCGGTTCCG
CCGCCGCTCTAACGGAGCAAACGTTGGAGTGTCGAGGGTGACTGGTGTTC
TTGATTTTAAGATATTGTCTCGATGTAGCGGCGGGTTTTATGCATCACTG
TTGTGGAGTTGCTTTATGCCCCCCCCTCGTGTTGTTTTTGCAGGCAAGAG
GTTTCTCTAAAAACACTCCTTCAAAGCTCCACGGGGCAACGGCAGCGAAG
CGGTGCTGATAGCTTAGACTCAAGCAAAGCGTGCTGATAGCAGAGGGTAC
CATGCATGCGTCGCAGTTCAAGATGTTCATTCATACCTGTTTTATTTTAC
AGTAGTAACTGTGCCTTTTGAGTGTTGTCCGAACACATCTGTCCTGTCCA
GTGCCAAAAACAGCGTGTACATAAGGGGGGAGGGAGTCGTCGCCGGAGTA
GTAGTAGCACTGCCACAATATGAACGTTTCGTACGAGACAGAAGTGAGTG
CTTCCAGTCGAGTCGGTATGCGAGGAATACGGGCAAGTGTCTGACCGAAC
GTGGTGGGGGTAGAGTGTCACGGTGTGTCATGCATACCAACGACCAAAAT
AAATTTCAAGACACTTCGTCGGCGATTTTTCATGTCGTTTGCGTGAACGT
GCGGTGCCGGCTGGGCTGACATTCTCAAGGTGAACTGAGAAACGCGGGAG
ATTCGCGACCAAAGGGCCCCCGTAAGCGCTCTATTTTCGCTGCTGGTCCG
TGCGGGGAAGGGAATCATCGTGACGACTGTAAAGGAGCAGGCGTTTCATC
CTCGCCTTGTTCAAGTCCTGGACGTGACAGAATTATTGATGAAACAAACA
AATAATAAATCATCTGTGTGTCGACCCCATGTTCACGAAACAGTTGAAAT
CGGGCTAACCTCACTCATAATTCAGGCCTGATCGCTAATATAACAGCTTT
TGCTCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig868:11884..17790+

>mRNA_Ecto-sp13_S_contig868.20133.1 ID=mRNA_Ecto-sp13_S_contig868.20133.1|Name=mRNA_Ecto-sp13_S_contig868.20133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig868:11884..17790+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCACCCTCAACGCAAACGCTCCGAGCTTCGTGCCAAGCAACCCAGT
TCAGCAGCAGATGGTCCGACCTATCTTCAACTCCGGCGTTCCTTCGTGTG
TGCTAATCATCGACAGCGACGAGTACCGCTCCGAGTTCCTGATCAACACC
TTCAACCGCGAGGCAGTGGCCGATGAGGACCTGTTTAATCCGGCGGTGTA
CCCTGTCTCAGCAGCAGACCACGAAGAGCTAGCGGCTGCTGAGAACTTCA
ACAGAGAAATGGCCGAGCTTGAAGCGCTCGAGCACCAGGAGGAGCTGAGG
TCGCTGCTTCAAGCCCGGATTTCGGCTCTCCAGCAAGGAACAAGCGGCAA
CCAGCGGCCGGCGAAGATCGCTTCCATGAACAGCGCCATGTTCTCTGGGC
TATCCAGAGGTGCACCGGCATCGGGACTGAAGGGAAAGCGCTTCAACCCT
GCCAAGAAGTGCCCTCACAACATCAACCAGCCGCTTGAAACAGGCCGCTA
TTACTAA
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