mRNA_Ecto-sp13_S_contig86751.20126.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86751.20126.1
Unique NamemRNA_Ecto-sp13_S_contig86751.20126.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86751.20126.1 vs. uniprot
Match: A0A6H5JZ77_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ77_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.300e-34
Identity = 77/86 (89.53%), Postives = 79/86 (91.86%), Query Frame = 3 
Query:  108 MKFAHIASVCLAATAAPRLARAATNFDNLISLVTQLQEEVMLLSTEYGAKDDEIASLVTQLTTCEQSTXXXXXXXLSQEESDNSTP 365
            MKFAHIASVCLAATAAPR+ARAATNFDNL+SLVTQLQEEVMLLSTEYGAKDDEIASLVTQLTTCEQST  XXXXX     SDNSTP
Sbjct:    1 MKFAHIASVCLAATAAPRIARAATNFDNLLSLVTQLQEEVMLLSTEYGAKDDEIASLVTQLTTCEQSTTTXXXXXXXXXXSDNSTP 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86751.20126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZ77_9PHAE3.300e-3489.53Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86751contigEcto-sp13_S_contig86751:143..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size385
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.7911744-UTR-Ecto-sp13_S_contig86751:142..1431681464139.7911744-UTR-Ecto-sp13_S_contig86751:142..143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86751 143..143 +
1681464139.817797-UTR-Ecto-sp13_S_contig86751:494..5271681464139.817797-UTR-Ecto-sp13_S_contig86751:494..527Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86751 495..527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.803694-CDS-Ecto-sp13_S_contig86751:143..4941681464139.803694-CDS-Ecto-sp13_S_contig86751:143..494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86751 144..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86751.20126.1prot_Ecto-sp13_S_contig86751.20126.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86751 144..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86751.20126.1

>prot_Ecto-sp13_S_contig86751.20126.1 ID=prot_Ecto-sp13_S_contig86751.20126.1|Name=mRNA_Ecto-sp13_S_contig86751.20126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MLLPHSCHTSHSPHCFLSQRVLPRPTVGSLPNSVRNEVRPHCLGLPRGNR
RAATCAGSYELRQPHIARHSAARGGHAALHRVRRQGRRDRVARHPADDVR
AEHHHHHQRRLVPGGK*
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mRNA from alignment at Ecto-sp13_S_contig86751:143..527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86751.20126.1 ID=mRNA_Ecto-sp13_S_contig86751.20126.1|Name=mRNA_Ecto-sp13_S_contig86751.20126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86751:143..527+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATGCTCCTTCCCCACTCCTGTCACACCAGCCACTCTCCCCACTGCTTCC
TCTCACAGCGAGTTCTACCTCGACCTACAGTAGGTAGCCTACCCAACTCC
GTACGCAATGAAGTTCGCCCACATTGCCTCGGTCTGCCTCGCGGCAACCG
CCGCGCCGCGACTTGCGCGGGCAGCTACGAACTTCGACAACCTCATATCG
CTCGTCACTCAGCTGCAAGAGGAGGTCATGCTGCTCTCCACCGAGTACGG
CGCCAAGGACGACGAGATCGCGTCGCTCGTCACCCAGCTGACGACGTGCG
AGCAGAGCACCACCACCACCACCAGCGACGACTTGTCCCAGGAGGAAAGT
GACAACTCCACACCATCTCCTGAACCGTCACCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86751:143..527+

>mRNA_Ecto-sp13_S_contig86751.20126.1 ID=mRNA_Ecto-sp13_S_contig86751.20126.1|Name=mRNA_Ecto-sp13_S_contig86751.20126.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86751:143..527+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCTTCCCCACTCCTGTCACACCAGCCACTCTCCCCACTGCTTCCT
CTCACAGCGAGTTCTACCTCGACCTACAGTAGGTAGCCTACCCAACTCCG
TACGCAATGAAGTTCGCCCACATTGCCTCGGTCTGCCTCGCGGCAACCGC
CGCGCCGCGACTTGCGCGGGCAGCTACGAACTTCGACAACCTCATATCGC
TCGTCACTCAGCTGCAAGAGGAGGTCATGCTGCTCTCCACCGAGTACGGC
GCCAAGGACGACGAGATCGCGTCGCTCGTCACCCAGCTGACGACGTGCGA
GCAGAGCACCACCACCACCACCAGCGACGACTTGTCCCAGGAGGAAAGTG
A
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