mRNA_Ecto-sp13_S_contig8675.20125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8675.20125.1
Unique NamemRNA_Ecto-sp13_S_contig8675.20125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.700e-53
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 264
            +LCPLFPHDQDTFNCLLSPAAVMSFKDKDSM+NVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS
Sbjct:  388 KLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMRNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 474
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.840e-38
Identity = 61/84 (72.62%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDE 255
            +LCPLFPHDQDTFNCLL+P+AV+ ++D +  +++EVLNPAYDYIPP LVDLY+TN+GG QPSYIYRLLAEYYHRDD I++P  E
Sbjct:  313 KLCPLFPHDQDTFNCLLAPSAVLPYEDTELAESIEVLNPAYDYIPPELVDLYMTNIGGHQPSYIYRLLAEYYHRDDYILAPEFE 396
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S3XZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZZ5_HETAK)

HSP 1 Score: 124 bits (310), Expect = 2.640e-33
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSD 252
            +LCPL+PH+ D FN LLSP AV+ +++  ++ +VEVLNPAYDYIPP L+DLYITNMGG QPSYIYRLLAEYYH +D ++S  +
Sbjct:  160 KLCPLYPHNLDYFNTLLSPGAVLDYEEMATLDDVEVLNPAYDYIPPELIDLYITNMGGHQPSYIYRLLAEYYHHEDSVLSAQE 242
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2DRQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRQ5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.210e-26
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSM----KNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCPL+PHD + FN L SPA+V+S+ D  +     ++ EVLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:   53 KLCPLYPHDLNAFNELRSPASVLSYFDTTNRTRLREDAEVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 132
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A6H5KHV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-25
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:  106 EVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 246
            +VLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRD+LIISP
Sbjct:   30 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDELIISP 76
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2XMS8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMS8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.440e-25
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    4 QLCPLFPHD-QDTFNCLLSPAAVMSFKDK--DSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCP++PH+ QDT N L+SP++V+ + +   D M  VE +NP +DYIPP L++LY+TN+GG QPSY+YRLLAEYYH DD
Sbjct:  172 KLCPMYPHEGQDTLNDLVSPSSVVDYSEMSDDLMSKVEFVNPIHDYIPPQLINLYVTNIGGFQPSYLYRLLAEYYHSDD 250
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2LE62_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LE62_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.060e-25
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    4 QLCPLFPHD-QDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCP+FPH+ QDT N L+SP++V++ +D +  +NVE +NP +DYIPP LV+LYITN+G  QPSYIYRLLAEYYH DD
Sbjct:  377 KLCPVFPHEGQDTLNDLISPSSVVNIEDSE-YENVEFVNPVHDYIPPQLVELYITNVGCFQPSYIYRLLAEYYHMDD 452
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A6H5JGR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 7.760e-25
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:  106 EVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 246
            +VLNPAYD IPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP
Sbjct:   30 QVLNPAYDCIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 76
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2GLW7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLW7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.340e-24
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    4 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSM----KNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCPL+PHD + FN L SPA+V+S+ D  +     ++ EVLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:  285 KLCPLYPHDLNAFNELRSPASVLSYFDTTNRTRLREDAEVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 364
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BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: B8C5F6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F6_THAPS)

HSP 1 Score: 103 bits (256), Expect = 6.830e-24
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    4 QLCPLFPHD-QDTFNCLLSPAAVM--SFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 231
            +LCP++PH+ QDT N L+SP++V+  S      +  VE +NP +DYIPP L+DLY+TN+GG QPSYIYRLLAEYYH DD
Sbjct:  398 KLCPMYPHEGQDTLNDLISPSSVVDGSLMSDPVLSEVEFVNPVHDYIPPQLIDLYVTNIGGFQPSYIYRLLAEYYHSDD 476
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHD8_ECTSI3.700e-5397.70Eukaryotic translation initiation factor 2B beta s... [more]
A0A836CBW3_9STRA3.840e-3872.62Eukaryotic translation initiation factor 2B beta s... [more]
A0A7S3XZZ5_HETAK2.640e-3365.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DRQ5_9STRA5.210e-2658.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5KHV2_9PHAE1.340e-2595.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XMS8_9STRA1.440e-2558.23Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2LE62_9STRA6.060e-2563.64Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A6H5JGR9_9PHAE7.760e-2595.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GLW7_9STRA5.340e-2458.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8C5F6_THAPS6.830e-2459.49Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8675contigEcto-sp13_S_contig8675:325..943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score182.6
Seed ortholog evalue8.2e-44
Seed eggNOG ortholog2880.D8LHD8
Preferred nameEIF2B2
Model size267
KEGG koko:K03372,ko:K03754,ko:K19041
KEGG TC2.A.1.25
KEGG Pathwayko00604,ko01100,ko03013,map00604,map01100,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0001541,GO:0001558,GO:0001666,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008135,GO:0008144,GO:0008150,GO:0008152,GO:0008361,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0014003,GO:0016043,GO:0017076,GO:0019001,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030516,GO:0030554,GO:0030900,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032045,GO:0032268,GO:0032501,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032991,GO:0033554,GO:0034248,GO:0034284,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036293,GO:0036294,GO:0040008,GO:0042063,GO:0042221,GO:0042552,GO:0042995,GO:0043005,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045927,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048638,GO:0048639,GO:0048699,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051239,GO:0051240,GO:0051246,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060322,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0080090,GO:0090066,GO:0097159,GO:0097367,GO:0097458,GO:0098772,GO:0120025,GO:0120035,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000026,GO:2000112
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1184@1,KOG1465@2759
EC2.3.2.27
Cds size267
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03012,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.7467003-CDS-Ecto-sp13_S_contig8675:324..4321681464139.7467003-CDS-Ecto-sp13_S_contig8675:324..432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8675 325..432 +
1681464139.7601166-CDS-Ecto-sp13_S_contig8675:784..9431681464139.7601166-CDS-Ecto-sp13_S_contig8675:784..943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8675 785..943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8675.20125.1prot_Ecto-sp13_S_contig8675.20125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8675 325..943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8675.20125.1

>prot_Ecto-sp13_S_contig8675.20125.1 ID=prot_Ecto-sp13_S_contig8675.20125.1|Name=mRNA_Ecto-sp13_S_contig8675.20125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
LQLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLV
DLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS*
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mRNA from alignment at Ecto-sp13_S_contig8675:325..943+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8675.20125.1 ID=mRNA_Ecto-sp13_S_contig8675.20125.1|Name=mRNA_Ecto-sp13_S_contig8675.20125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=619bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8675:325..943+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCTGTGCCCGCTGTTTCCTCACGACCAGGACACGTTCAACTGCCT
TCTCTCGCCCGCTGCGGTGATGTCCTTCAAGGACAAGGACAGCATGAAGA
ACGTCGAGGTGAGCAGGCAACCACACCACGCCTCCTAAGGCGCTCAGGTA
TGCCGACATCTGTGTGTACATGGTAGCGCAAACGGGAATAACCGAATGAT
GCCATTGGAGGCGATGATGTGACGCGAAAAGTTCGGAAGGGGCGCGGCCC
GCAGCAACAGTGCTCCGTTCACCATCTGCGTTGCGTGGAGGTTGATGGTA
TTTTGCGGTACCTGTTCAAGATTGCCTGAGAACACTCGGGTTACACTGGT
TGTTGGCACTTTGGTGCAGCATGCAGCAGCTGGAAGGTGCTGTTCAGAGA
TTTGAACGTATAGAACAACGATCGGAACAGTGTTTTTTCCTGTGCCGCGC
GGCCCGGCAGGTTTTGAACCCCGCGTACGACTACATCCCACCCAACCTCG
TCGATCTCTACATCACCAACATGGGGGGCTTGCAACCGTCGTACATCTAC
CGGCTGTTGGCGGAGTACTACCACAGGGATGACCTGATCATCTCCCCTTC
AGACGAGCAGGCCAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8675:325..943+

>mRNA_Ecto-sp13_S_contig8675.20125.1 ID=mRNA_Ecto-sp13_S_contig8675.20125.1|Name=mRNA_Ecto-sp13_S_contig8675.20125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8675:325..943+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCTGTGCCCGCTGTTTCCTCACGACCAGGACACGTTCAACTGCCT
TCTCTCGCCCGCTGCGGTGATGTCCTTCAAGGACAAGGACAGCATGAAGA
ACGTCGAGGTTTTGAACCCCGCGTACGACTACATCCCACCCAACCTCGTC
GATCTCTACATCACCAACATGGGGGGCTTGCAACCGTCGTACATCTACCG
GCTGTTGGCGGAGTACTACCACAGGGATGACCTGATCATCTCCCCTTCAG
ACGAGCAGGCCAGCTGA
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