prot_Ecto-sp13_S_contig8675.20125.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8675.20125.1
Unique Nameprot_Ecto-sp13_S_contig8675.20125.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length89
Homology
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: D8LHD8_ECTSI (Eukaryotic translation initiation factor 2B beta subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHD8_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.700e-53
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0
Query:    2 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 88
            +LCPLFPHDQDTFNCLLSPAAVMSFKDKDSM+NVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS
Sbjct:  388 KLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMRNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS 474          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A836CBW3_9STRA (Eukaryotic translation initiation factor 2B beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.840e-38
Identity = 61/84 (72.62%), Postives = 75/84 (89.29%), Query Frame = 0
Query:    2 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDE 85
            +LCPLFPHDQDTFNCLL+P+AV+ ++D +  +++EVLNPAYDYIPP LVDLY+TN+GG QPSYIYRLLAEYYHRDD I++P  E
Sbjct:  313 KLCPLFPHDQDTFNCLLAPSAVLPYEDTELAESIEVLNPAYDYIPPELVDLYMTNIGGHQPSYIYRLLAEYYHRDDYILAPEFE 396          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S3XZZ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZZ5_HETAK)

HSP 1 Score: 124 bits (310), Expect = 2.640e-33
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 0
Query:    2 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSD 84
            +LCPL+PH+ D FN LLSP AV+ +++  ++ +VEVLNPAYDYIPP L+DLYITNMGG QPSYIYRLLAEYYH +D ++S  +
Sbjct:  160 KLCPLYPHNLDYFNTLLSPGAVLDYEEMATLDDVEVLNPAYDYIPPELIDLYITNMGGHQPSYIYRLLAEYYHHEDSVLSAQE 242          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2DRQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRQ5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.210e-26
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    2 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSM----KNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 77
            +LCPL+PHD + FN L SPA+V+S+ D  +     ++ EVLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:   53 KLCPLYPHDLNAFNELRSPASVLSYFDTTNRTRLREDAEVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 132          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A6H5KHV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-25
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
Query:   36 EVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 82
            +VLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRD+LIISP
Sbjct:   30 QVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDELIISP 76          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2XMS8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMS8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.440e-25
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 0
Query:    2 QLCPLFPHD-QDTFNCLLSPAAVMSFKDK--DSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 77
            +LCP++PH+ QDT N L+SP++V+ + +   D M  VE +NP +DYIPP L++LY+TN+GG QPSY+YRLLAEYYH DD
Sbjct:  172 KLCPMYPHEGQDTLNDLVSPSSVVDYSEMSDDLMSKVEFVNPIHDYIPPQLINLYVTNIGGFQPSYLYRLLAEYYHSDD 250          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2LE62_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LE62_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.060e-25
Identity = 49/77 (63.64%), Postives = 64/77 (83.12%), Query Frame = 0
Query:    2 QLCPLFPHD-QDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 77
            +LCP+FPH+ QDT N L+SP++V++ +D +  +NVE +NP +DYIPP LV+LYITN+G  QPSYIYRLLAEYYH DD
Sbjct:  377 KLCPVFPHEGQDTLNDLISPSSVVNIEDSE-YENVEFVNPVHDYIPPQLVELYITNVGCFQPSYIYRLLAEYYHMDD 452          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A6H5JGR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 7.760e-25
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0
Query:   36 EVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 82
            +VLNPAYD IPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP
Sbjct:   30 QVLNPAYDCIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDDLIISP 76          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: A0A7S2GLW7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLW7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.340e-24
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    2 QLCPLFPHDQDTFNCLLSPAAVMSFKDKDSM----KNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 77
            +LCPL+PHD + FN L SPA+V+S+ D  +     ++ EVLNPAYD++PP L+ LY+TN GG QPSYIYRLLAE+YH  D
Sbjct:  285 KLCPLYPHDLNAFNELRSPASVLSYFDTTNRTRLREDAEVLNPAYDFVPPELIALYVTNNGGYQPSYIYRLLAEFYHPSD 364          
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Match: B8C5F6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5F6_THAPS)

HSP 1 Score: 103 bits (256), Expect = 6.830e-24
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 0
Query:    2 QLCPLFPHD-QDTFNCLLSPAAVM--SFKDKDSMKNVEVLNPAYDYIPPNLVDLYITNMGGLQPSYIYRLLAEYYHRDD 77
            +LCP++PH+ QDT N L+SP++V+  S      +  VE +NP +DYIPP L+DLY+TN+GG QPSYIYRLLAEYYH DD
Sbjct:  398 KLCPMYPHEGQDTLNDLISPSSVVDGSLMSDPVLSEVEFVNPVHDYIPPQLIDLYVTNIGGFQPSYIYRLLAEYYHSDD 476          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8675.20125.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHD8_ECTSI3.700e-5397.70Eukaryotic translation initiation factor 2B beta s... [more]
A0A836CBW3_9STRA3.840e-3872.62Eukaryotic translation initiation factor 2B beta s... [more]
A0A7S3XZZ5_HETAK2.640e-3365.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DRQ5_9STRA5.210e-2658.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5KHV2_9PHAE1.340e-2595.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XMS8_9STRA1.440e-2558.23Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2LE62_9STRA6.060e-2563.64Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A6H5JGR9_9PHAE7.760e-2595.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GLW7_9STRA5.340e-2458.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8C5F6_THAPS6.830e-2459.49Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042529Initiation factor 2B-like, C-terminalGENE3D3.40.50.10470coord: 1..73
e-value: 4.6E-23
score: 83.6
IPR000649Initiation factor 2B-relatedPFAMPF01008IF-2Bcoord: 3..62
e-value: 1.4E-11
score: 44.1
NoneNo IPR availablePANTHERPTHR45859FAMILY NOT NAMEDcoord: 2..79
NoneNo IPR availablePANTHERPTHR45859:SF1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETAcoord: 2..79
IPR037171NagB/RpiA transferase-likeSUPERFAMILY100950NagB/RpiA/CoA transferase-likecoord: 3..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8675contigEcto-sp13_S_contig8675:325..943 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8675.20125.1mRNA_Ecto-sp13_S_contig8675.20125.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8675 325..943 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8675.20125.1 ID=prot_Ecto-sp13_S_contig8675.20125.1|Name=mRNA_Ecto-sp13_S_contig8675.20125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
LQLCPLFPHDQDTFNCLLSPAAVMSFKDKDSMKNVEVLNPAYDYIPPNLV
DLYITNMGGLQPSYIYRLLAEYYHRDDLIISPSDEQAS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042529IF_2B-like_C
IPR000649IF-2B-related
IPR037171NagB/RpiA_transferase-like