mRNA_Ecto-sp13_S_contig8672.20123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8672.20123.1
Unique NamemRNA_Ecto-sp13_S_contig8672.20123.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8672.20123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8672contigEcto-sp13_S_contig8672:1898..3540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.576475-CDS-Ecto-sp13_S_contig8672:1897..19751681464139.576475-CDS-Ecto-sp13_S_contig8672:1897..1975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8672 1898..1975 +
1681464139.5876842-CDS-Ecto-sp13_S_contig8672:3015..30831681464139.5876842-CDS-Ecto-sp13_S_contig8672:3015..3083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8672 3016..3083 +
1681464139.5977237-CDS-Ecto-sp13_S_contig8672:3452..35401681464139.5977237-CDS-Ecto-sp13_S_contig8672:3452..3540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8672 3453..3540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8672.20123.1prot_Ecto-sp13_S_contig8672.20123.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8672 1898..3540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8672.20123.1

>prot_Ecto-sp13_S_contig8672.20123.1 ID=prot_Ecto-sp13_S_contig8672.20123.1|Name=mRNA_Ecto-sp13_S_contig8672.20123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
GPSQQQRQQHITATRASTHVGRGPLLGSKLKNMGWATHVPREGASIGNRN
KHAATSGETCTTFAWGGNAISGRATSR*
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mRNA from alignment at Ecto-sp13_S_contig8672:1898..3540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8672.20123.1 ID=mRNA_Ecto-sp13_S_contig8672.20123.1|Name=mRNA_Ecto-sp13_S_contig8672.20123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1643bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8672:1898..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCGTCGCAGCAGCAGCGGCAGCAACATATAACAGCTACCCGCGCTTC
TACACACGTTGGCAGAGGTCCATTGCTGGTAAGTTGTGCTATGCGCAGAG
CTTTCGCACAGCAGCCTGGGATTTTTTTATCACAGCAAGTTCCTGTGGGG
AGGGGCAGTTAGTTGGCTGGGGGTGTTTCGAAAATGCTCGTCTTTTTTTG
GGTTCTTCTCTGGAAAACCGGCGAAGTTTTTTGGGGTTTGGTACGGTGGA
GCGGTGGCCGAATGCGTGACAGAAGGAGTAGTCGAAGGACAAATAAACGA
TAAATGGACGCCTTCCTTCCTCTCCCCCAGGACTCTTGGCCATTGGGAGG
GAAAAAGGTTTTGAGCGCCCGCGAAATAGCCGACATCACGTAGATCCACA
CAGAGACAAAAAAACAGTCTGTTGTAGGGAGCTGGAGGAGGGAACGATGT
GGGGCACACACATGCAGAAGCGAGTGTCATTGTAAGCAGCAGACTCACGT
TCAACCGCGATATTGGCGTAGGAAATGGAAGAATAATATTTGGGGACTCG
TCTGCGTGAGGAACGTTGCTTACGTTCGTACCGAAGGTAGGAGTTCTCCA
CACCGAAGCAAAACTAACCCGGTTGTCAGTTTAGGAGAGAGAAACAAAGT
ATAGATGAGTAAGGCACAAAAAGATAGGTCCAGATAGTGATTGGCGTTTG
AGTGTCTCAGCTAGGATCGTCTCTCTCTCTTCCTTTGGGCTGGAGAAAGC
AAAAGAAAAGGCTATTCGAAAGAAGAAAAAAACAAACAACATTCCGCGCT
CACCCTGTTTCATACAATGCAAATCTGGTTGGTGTATACACAGAATTTGA
ACCAATTCGCCCCCCCTGTGGCCGTCGGAGCAAAAAAAATAGGACCGAGA
ACAATCACCAGCTACCCATCCGCAACGCCAGGCGTGGCGACATTATCGCA
CACCTATACAAATCTCCTTTCATGAAGTCGCCAGGCGTGTGCTGTAGGAG
CTCCACGTTGAATTGCTCAGGGGGACGCCATCAAAAGCTGGGTGTGGCCA
GGATTCTGGGCAGATCACTCGTCGTAATGACATTTTCCATGTCGGCCATG
CCAAATTCGCTGATGTAGGGATCGAAGTTGAAGAACATGGGATGGGCAAC
GCACGTACCGAGAGAGGGTGCCAGCATCGGGAATCGGTACGCTGGGTTTG
GTCGCAATGTTCGTACCATACGAACTACAGATGTTTGTTCGGTCATCCTT
CTTTTACCGCCCTTACCAGCCAACTAGATGATTCATTGTCATATCAGTGT
TCAACGCTTTGTTTGCCAATTTCAAGCGTCGCATCATCATTTTTGATCGT
TTCTGCAAAAAAACGAACTTTGGATGGGCGAGAGGTGGAGGTAGTGCTCA
TGATTTGGCGGAAAAATTTCATCAACATCGGCCACAATTGTAAGACTCTG
AAGGGCCGTGTGGATTATTACCAGAATTGCGTTCAACACGTATGTCGAAT
CTTTGTGCGAGTGCAACCTAAACGGGTACACTCTGAACGTGCACATTTCA
TCCAGGAACAAGCACGCGGCGACCTCGGGAGAAACGTGTACAACCTTCGC
GTGGGGCGGCAACGCAATAAGTGGCCGTGCAACGTCACGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8672:1898..3540+

>mRNA_Ecto-sp13_S_contig8672.20123.1 ID=mRNA_Ecto-sp13_S_contig8672.20123.1|Name=mRNA_Ecto-sp13_S_contig8672.20123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8672:1898..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCGTCGCAGCAGCAGCGGCAGCAACATATAACAGCTACCCGCGCTTC
TACACACGTTGGCAGAGGTCCATTGCTGGGATCGAAGTTGAAGAACATGG
GATGGGCAACGCACGTACCGAGAGAGGGTGCCAGCATCGGGAATCGGAAC
AAGCACGCGGCGACCTCGGGAGAAACGTGTACAACCTTCGCGTGGGGCGG
CAACGCAATAAGTGGCCGTGCAACGTCACGTTGA
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