mRNA_Ecto-sp13_S_contig867.20116.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig867.20116.1
Unique NamemRNA_Ecto-sp13_S_contig867.20116.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig867.20116.1 vs. uniprot
Match: A0A6H5K773_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K773_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 6.370e-83
Identity = 122/132 (92.42%), Postives = 125/132 (94.70%), Query Frame = 1 
Query:    1 MFRALVRARPLWPGISTKPAMQPPRVSAAQQQAPSQVQQPAAVRSQPFHSTAPASIGFKNFKNSPRPKWKTQQKLDAKNADILAEAGGQPRVTYAEALKSHKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ 396
            MFR+LVR RP WPG ST+PAMQPPRVSAA QQ P QVQQP AVRSQPFHSTAPASIGFKNFKNSPRPKWKTQQKLDAKNADILA+AGGQPRVTYAEALKSHKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ
Sbjct:    1 MFRSLVRTRPSWPGASTRPAMQPPRVSAAHQQGPRQVQQPDAVRSQPFHSTAPASIGFKNFKNSPRPKWKTQQKLDAKNADILAKAGGQPRVTYAEALKSHKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig867.20116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K773_9PHAE6.370e-8392.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig867contigEcto-sp13_S_contig867:6216..7377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size399
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_005890.1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.17091-CDS-Ecto-sp13_S_contig867:6215..64041681464139.17091-CDS-Ecto-sp13_S_contig867:6215..6404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 6216..6404 -
1681464139.181212-CDS-Ecto-sp13_S_contig867:7167..73771681464139.181212-CDS-Ecto-sp13_S_contig867:7167..7377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 7168..7377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig867.20116.1prot_Ecto-sp13_S_contig867.20116.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig867 6216..7377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig867.20116.1

>prot_Ecto-sp13_S_contig867.20116.1 ID=prot_Ecto-sp13_S_contig867.20116.1|Name=mRNA_Ecto-sp13_S_contig867.20116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MFRALVRARPLWPGISTKPAMQPPRVSAAQQQAPSQVQQPAAVRSQPFHS
TAPASIGFKNFKNSPRPKWKTQQKLDAKNADILAEAGGQPRVTYAEALKS
HKPRAWIGARKKVVWGRLFGPSNTGGGNKQGQ*
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mRNA from alignment at Ecto-sp13_S_contig867:6216..7377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig867.20116.1 ID=mRNA_Ecto-sp13_S_contig867.20116.1|Name=mRNA_Ecto-sp13_S_contig867.20116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:6216..7377- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCGTGCCCTAGTACGAGCGCGGCCATTGTGGCCGGGGATCAGCAC
CAAACCCGCGATGCAGCCTCCCAGGGTGTCGGCTGCACAACAGCAGGCAC
CAAGCCAGGTCCAGCAGCCTGCTGCTGTGCGGTCCCAGCCCTTCCACTCC
ACGGCTCCGGCGTCCATCGGATTCAAGAACTTCAAGAACTCGCCAAGGCC
TAAGTGGAAGGTGTGTGCATTGAAGTAGCGTCTCTTGGAGGGCTAATGAG
AGCTTGCCGATCAAAACATAACGCTTCTGTATATCCCTTGTCCCAAATTG
ACGCCTGATATCACCCCCCCCCCCTCTTGGCGTCGACACCGAAGAGATGA
TTGCCATTTGCGGAAATCGCAAGTCAGTCGATACGGACGGTAGCAGGTGC
GAAATAGCGGCCGCGTGGCTTACAAAGCGCATGCATCCACCGATACCAAT
TGCTGAGGTAGATCAAGCCAAACGTATTTTCTTTGACGAGACCATGGGGC
AATGGGTTTTTGCCCGTGGGTGCATCAGTTTTTTCGTGAAGAGATTTAAA
ATATTTCCGTTCTCGCCCTTGACCGACAACTACTGCTGCTGCATCTGGTG
GTTTCGATGTCAGCGGGAACACTATTGTCGATGAAGGCGTTTGGCCGCAT
TGGATCAGCAAACGTTTCCCTGTTGCTAAAAGTCGACAGCAACCAAAGGC
ATCACGTCCGGTTGGCCAATTGCAGACGTGTGAATGGAGATGTGTTGTAT
GCATACGGCACCACTGCCACCGAGTGAAACACGTTGTGACCGCGAGGAAC
CCTACCATATCTGTTAAAACACGAGCCGGGCGTTGCTCCTACGAGCTGTG
CGTTGTAGGGCCGCTTCCCGTAGCTGCTCTTTCTATTTCTTGTATGCATC
TGAAATATTGTCATATTCATTACTTCGCTTCGCCCGCTGCCGACCCTGTC
ATCCCCCTCCGCCATCGCGAAAGACGCAACAAAAACTGGACGCCAAGAAC
GCCGACATTCTTGCGGAAGCGGGAGGCCAGCCGCGCGTGACGTACGCCGA
GGCCCTCAAATCGCACAAGCCGAGGGCGTGGATCGGGGCAAGGAAGAAGG
TCGTGTGGGGTCGGTTGTTCGGGCCAAGCAACACCGGTGGTGGCAACAAA
CAAGGCCAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig867:6216..7377-

>mRNA_Ecto-sp13_S_contig867.20116.1 ID=mRNA_Ecto-sp13_S_contig867.20116.1|Name=mRNA_Ecto-sp13_S_contig867.20116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:6216..7377- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCGTGCCCTAGTACGAGCGCGGCCATTGTGGCCGGGGATCAGCAC
CAAACCCGCGATGCAGCCTCCCAGGGTGTCGGCTGCACAACAGCAGGCAC
CAAGCCAGGTCCAGCAGCCTGCTGCTGTGCGGTCCCAGCCCTTCCACTCC
ACGGCTCCGGCGTCCATCGGATTCAAGAACTTCAAGAACTCGCCAAGGCC
TAAGTGGAAGACGCAACAAAAACTGGACGCCAAGAACGCCGACATTCTTG
CGGAAGCGGGAGGCCAGCCGCGCGTGACGTACGCCGAGGCCCTCAAATCG
CACAAGCCGAGGGCGTGGATCGGGGCAAGGAAGAAGGTCGTGTGGGGTCG
GTTGTTCGGGCCAAGCAACACCGGTGGTGGCAACAAACAAGGCCAATAG
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