mRNA_Ecto-sp13_S_contig867.20118.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig867.20118.1
Unique NamemRNA_Ecto-sp13_S_contig867.20118.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig867.20118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig867contigEcto-sp13_S_contig867:12748..13885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1138
Hectar predicted targeting categoryother localisation
Exons1
Cds size576
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.987901-UTR-Ecto-sp13_S_contig867:12747..130741681464138.987901-UTR-Ecto-sp13_S_contig867:12747..13074Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig867 12748..13074 +
1681464139.017459-UTR-Ecto-sp13_S_contig867:13650..138851681464139.017459-UTR-Ecto-sp13_S_contig867:13650..13885Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig867 13651..13885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464139.0044894-CDS-Ecto-sp13_S_contig867:13074..136501681464139.0044894-CDS-Ecto-sp13_S_contig867:13074..13650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig867 13075..13650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig867.20118.1prot_Ecto-sp13_S_contig867.20118.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig867 13075..13650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig867.20118.1

>prot_Ecto-sp13_S_contig867.20118.1 ID=prot_Ecto-sp13_S_contig867.20118.1|Name=mRNA_Ecto-sp13_S_contig867.20118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MKNNFPTSCEESCASMDDFHRHIIRESKQKHTKSRSRTVKPLSPLSLPFS
FATPTHAITSFSSLFEGKDIEKTTIPRNKRIDLYTYFPHASKSITLFLSL
FQETAGTFSLSLPPSTPPLSLRPATELLSLLPCSRNNPRSSHVESTFAHR
ISRSGQRYDSRRGMYFARVTRPWLSPLDLPSGQTMNANLRP*
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mRNA from alignment at Ecto-sp13_S_contig867:12748..13885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig867.20118.1 ID=mRNA_Ecto-sp13_S_contig867.20118.1|Name=mRNA_Ecto-sp13_S_contig867.20118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:12748..13885+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCATGTATTTTCTTCAATACAAACACACGCACGAGAGCGCATCTACAA
CGCGCGGAAGAACGCGCCGTCCAAAATGGTGTCAGCGCGGAGAGAACAAG
GACTCCTACCAAACATGCAATATTTCCCATTCACAAAATATTCTCCATCT
ATCCACTACCTCTTCTTTCCTTTGCACTAGTGAAAAATTACCCATCTATG
CAATGTACCCGATCCTCTTTTTTACGCGGGATAAGTGCAGACGATATCGG
CCTTCTTTTCCCTCCATCCGACATTCTTCTCGAATCTAGGGAGGTGGCAG
ACACCTCCTGCAGACCCTCATCGATGAATGAAAAACAACTTCCCGACATC
ATGCGAGGAGTCTTGCGCGTCGATGGATGATTTCCACCGACACATCATCC
GTGAAAGCAAACAAAAACACACAAAAAGCCGCAGTAGGACAGTAAAACCT
CTCTCACCCCTCTCCCTCCCCTTCTCTTTTGCAACCCCAACCCATGCAAT
AACAAGCTTTAGTAGCCTATTTGAAGGGAAGGACATCGAGAAAACTACCA
TACCAAGGAATAAAAGAATAGACCTTTACACATATTTCCCACACGCCTCA
AAATCAATCACTTTATTTCTCTCTCTTTTTCAGGAAACTGCGGGCACCTT
TTCTCTCTCTCTCCCTCCCTCCACGCCTCCCTTATCTCTGCGCCCAGCGA
CAGAGTTGCTTTCCCTTCTTCCATGTTCACGCAACAACCCGCGATCGAGC
CATGTAGAATCTACATTCGCGCACCGGATCAGCCGCTCGGGACAGAGGTA
CGATTCGCGTCGTGGTATGTACTTTGCTCGTGTGACCCGCCCATGGCTCT
CCCCTCTAGACCTTCCTAGCGGCCAGACAATGAACGCGAACCTAAGACCG
TGAACAATGGTAAGCTCTACAGGAAAAGAACATAGAGAGGCCCCTCGAGG
TCTGGGGCGAGTAGAGTGGCGGGCCCCCGTCATGCAAAAGAAGTACGTAC
AAAACAAGCGTTGGCACACGACGCGGGTTCCTCGTTGTGTTCGGAAAAGA
GAGAAGGACCGTACTATTTGCCGCGATGTCGAATACAGAAGAGGTCGATC
CGTTTTATTCGTCGTACAAGAAGACAACGAAAAAAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig867:12748..13885+

>mRNA_Ecto-sp13_S_contig867.20118.1 ID=mRNA_Ecto-sp13_S_contig867.20118.1|Name=mRNA_Ecto-sp13_S_contig867.20118.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig867:12748..13885+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAACAACTTCCCGACATCATGCGAGGAGTCTTGCGCGTCGATGGA
TGATTTCCACCGACACATCATCCGTGAAAGCAAACAAAAACACACAAAAA
GCCGCAGTAGGACAGTAAAACCTCTCTCACCCCTCTCCCTCCCCTTCTCT
TTTGCAACCCCAACCCATGCAATAACAAGCTTTAGTAGCCTATTTGAAGG
GAAGGACATCGAGAAAACTACCATACCAAGGAATAAAAGAATAGACCTTT
ACACATATTTCCCACACGCCTCAAAATCAATCACTTTATTTCTCTCTCTT
TTTCAGGAAACTGCGGGCACCTTTTCTCTCTCTCTCCCTCCCTCCACGCC
TCCCTTATCTCTGCGCCCAGCGACAGAGTTGCTTTCCCTTCTTCCATGTT
CACGCAACAACCCGCGATCGAGCCATGTAGAATCTACATTCGCGCACCGG
ATCAGCCGCTCGGGACAGAGGTACGATTCGCGTCGTGGTATGTACTTTGC
TCGTGTGACCCGCCCATGGCTCTCCCCTCTAGACCTTCCTAGCGGCCAGA
CAATGAACGCGAACCTAAGACCGTGA
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