mRNA_Ecto-sp13_S_contig8666.20113.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8666.20113.1
Unique NamemRNA_Ecto-sp13_S_contig8666.20113.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8666.20113.1 vs. uniprot
Match: D7FXF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF0_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 4.130e-82
Identity = 146/158 (92.41%), Postives = 150/158 (94.94%), Query Frame = 2 
Query:   35 MSVADAPATEVAAAAPVQAIDGQEGEPVEPYYWEDGGNPNVDWWAKVRHSLHFGGVKAVAGAEAIGEVVANTLGLNDSKYQYVIDALEADEIREKRXXXDEEDRRHMALEEEAAXXXXXXXXXXGEVKQDSGAIELGDTRLSLPDSGGETALPEESTA 508
            MSVADAPA EVAAAAPVQAIDGQEG+PVEPY+WE+GGNPNVDWWAKVRHSLHFGGVKAVAGAEA+GEVVANTLGLNDSKYQYVIDALEADEIREK XXX  EDRR MALEEEAA XXXXXXXXXGEVKQDSGAIELGDTRLSLPDS GETALPE STA
Sbjct:    1 MSVADAPAIEVAAAAPVQAIDGQEGDPVEPYFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADEIREKXXXXXXEDRRQMALEEEAAKXXXXXXXXXGEVKQDSGAIELGDTRLSLPDSSGETALPEGSTA 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8666.20113.1 vs. uniprot
Match: A0A5A8E207_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E207_CAFRO)

HSP 1 Score: 67.0 bits (162), Expect = 2.310e-9
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:   95 DGQEGEPVEPYYWEDGGNPNVDWWAKVRHSLHFGGVKAVAGAEAIGEVVANTLGLNDSKYQYVIDALE 298
            DG E E   PYYWE GG+ +V     + H+LHF G  A+AG +++G V+A+TLGL  S+YQ+ ID  E
Sbjct:   31 DGDEEEEA-PYYWEAGGDADVSTATALAHNLHFWGSLALAGVDSVGSVLASTLGLTQSRYQFEIDYAE 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8666.20113.1 vs. uniprot
Match: A0A7S2CUC7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUC7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.580e-8
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 2 
Query:   56 ATEVAAAAPVQAIDGQEGEPV--EPYYWE-DGGNPNVDWWAKVRHSLHFGGVKAVAGAEAIGEVVANTLGLNDSKYQYVIDALEADEIREKRXXXDEEDRRHMALEE 367
            A + AA+     +D  EG P+   PYYW+  G NP +    K  H   + G K   G E IG +VA+  G+N SKYQYVIDA++ DE RE+R    E +R  +A EE
Sbjct:   20 AADTAASEDDDLVDPDEG-PIWQRPYYWQLVGYNPPLH--RKASHIAWWFGSKVFYGMEFIGAIVADLAGMNQSKYQYVIDAMKEDERREQRKKRIESERAMLAEEE 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8666.20113.1 vs. uniprot
Match: A0A7S2RVN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVN4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.640e-7
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2 
Query:  122 PYYWEDGGNPNVDWWAKVRHSLHFGGVKAVAGAEAIGEVVANTLGLNDSKYQYVIDALEADEIREKRXXXDEEDRRHMALEEEA 373
            PYYWE     +V  W K  H   + G +   G E +GEVVA+ LGLN+S+YQ+VIDA E ++ R  R   D E+ R   L ++A
Sbjct:   51 PYYWELVDVQDVPAWQKAWHISRWTGERVFRGMEFVGEVVADILGLNESRYQWVIDAAENEKAR-LRMEADIEEHRAEELRQQA 133
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8666.20113.1 vs. uniprot
Match: A0A7S2V0M7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0M7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.510e-6
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:  122 PYYWEDGGNPN--VDWWAKVRHSLHFGGVKAVAGAEAIGEVVANTLGLNDSKYQYVIDALEAD 304
            PYYWE+  + +  +    +V H+ ++   K V G E  GE VA+ LGLN S+YQYVIDA+E D
Sbjct:   49 PYYWEEPSSTDNPLPLGRRVFHNFYWAAEKIVDGMEFAGECVAHMLGLNQSQYQYVIDAMEID 111
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8666.20113.1 vs. uniprot
Match: A0A7S2NT86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NT86_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.400e-6
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 2 
Query:  125 YYWEDGGNPNVDWWAKVRHSLHFGGVKAVAGAEAIGEVVANTLGLNDSKYQYVIDALEADE 307
            Y+WE G N ++ W  K+ H       K V  AEA GEVVANTLGLN S+Y YV D +  +E
Sbjct:   82 YFWETGNN-DLSWKVKLWHRTVAVLGKGVKNAEAAGEVVANTLGLNGSRYDYVYDTMTPEE 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8666.20113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FXF0_ECTSI4.130e-8292.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5A8E207_CAFRO2.310e-948.53Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S2CUC7_9STRA3.580e-842.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RVN4_9STRA2.640e-742.86Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2V0M7_9STRA4.510e-646.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2NT86_9STRA6.400e-649.18Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8666contigEcto-sp13_S_contig8666:3471..6447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1112
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionFAM177 family
Ec32 orthologEc-07_002960.1
Cds size477
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8666.20113.1prot_Ecto-sp13_S_contig8666.20113.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8666 3505..5846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.7800684-UTR-Ecto-sp13_S_contig8666:3470..35041681464138.7800684-UTR-Ecto-sp13_S_contig8666:3470..3504Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8666 3471..3504 +
1681464138.8340597-UTR-Ecto-sp13_S_contig8666:5846..64471681464138.8340597-UTR-Ecto-sp13_S_contig8666:5846..6447Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8666 5847..6447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.791254-CDS-Ecto-sp13_S_contig8666:3504..35851681464138.791254-CDS-Ecto-sp13_S_contig8666:3504..3585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8666 3505..3585 +
1681464138.8016982-CDS-Ecto-sp13_S_contig8666:4648..47681681464138.8016982-CDS-Ecto-sp13_S_contig8666:4648..4768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8666 4649..4768 +
1681464138.8123035-CDS-Ecto-sp13_S_contig8666:5246..53631681464138.8123035-CDS-Ecto-sp13_S_contig8666:5246..5363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8666 5247..5363 +
1681464138.8229885-CDS-Ecto-sp13_S_contig8666:5687..58461681464138.8229885-CDS-Ecto-sp13_S_contig8666:5687..5846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8666 5688..5846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8666.20113.1

>prot_Ecto-sp13_S_contig8666.20113.1 ID=prot_Ecto-sp13_S_contig8666.20113.1|Name=mRNA_Ecto-sp13_S_contig8666.20113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MSVADAPATEVAAAAPVQAIDGQEGEPVEPYYWEDGGNPNVDWWAKVRHS
LHFGGVKAVAGAEAIGEVVANTLGLNDSKYQYVIDALEADEIREKREQRD
EEDRRHMALEEEAAKVRERREQQDGEVKQDSGAIELGDTRLSLPDSGGET
ALPEESTA*
back to top

mRNA from alignment at Ecto-sp13_S_contig8666:3471..6447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8666.20113.1 ID=mRNA_Ecto-sp13_S_contig8666.20113.1|Name=mRNA_Ecto-sp13_S_contig8666.20113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2977bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8666:3471..6447+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCGCCAAGAAGGAGGGAGGCACCAGGGCATCATGTCAGTGGCGGATG
CCCCTGCGACTGAAGTGGCAGCGGCGGCCCCGGTGCAAGCAATTGACGGG
CAAGAGGGGGAGCCGGTGAGTGGGTCGGGAGGCATAGTGTACATCAACAC
TTCAGGACTGGGTACCATAAGGTTGCGAGTCAGCGCAAAGAGGTCCGAGC
GATTGTCAAAGCGTATTTACTCCACAACCAGGAGGTTACCACTGTCGAAA
AGGGTGGTTTGGGAAATATCTCATCGAGAGCTTTCCTGAGAAATATCGGT
TGGCGCTCCCACCCTTCTGGTTGTGGAGAAATTACGCTTTGAAAGTCGAT
CGCACCCCTGTGCGTTGACTCGTAACCTTACGGTATTCTGGACATCAAAC
GATCGCTGGCAAGAGTTTAAGTGTCTTAGAAATGTCGCTGGGAACACGTG
CATCAGTTTTGGATGCTGGGTACACAACCCGGTCGGTTAAGTTTGCTTCA
GAAATCGAGGAAGATCGAGATCATCCCGATCTTGAGATGTTTTGCGATCT
CCATCGCAAGCAGTAGCTGTCGATCTTGGTTGGAAACCCTGGGGATGATG
CCGCTTGTACCCCCTCCGTATCACCCCCCACACACAAGTCGGGAGATCGC
CCAAAGCTTCCTGGTACTCACCTCGGAGAATCGCCCGAGCGGTTCATGAT
GTTTAGATTCAGCTGTAGCAAAGCAAGATACCACGTAATGCAAGCTACTC
TTGTCCTTGATAGGCTACGGATGGTGTTGTACGATGTACGTGTCGATTGC
TGTCGGCTTGGCTTGGGAACACGCGTCCCCGTGACACTCGAACGTTGCCA
CGTTGAGCCGTCGACGGGCTGCGCTACAGCACTTCAGCTGATATGGGTTT
TGTGTCTGCCCTTTTTGGCCATGGCGATACCCCACTATCTCTCTCTCTCT
CCGTGACAGCAAGTAACGTGTTCGTTCATTCACTTGTTCACGGGCGGCGG
GGGTACAGGCGGAGGAGGTACATCCAGTCTGTATCGTTGGTTTTTTCGGG
CTTCTTCACGCAGCATGGTTTACTCGTGACATTTCATTTGCAACACGGAG
AGCACTTTTTGCCGCGGCGTAGTCTTGACTGCTGTACATTCGCCCCTCGA
CAACCGTAATTCGATTCGATCCATGCAGGTGGAGCCTTACTATTGGGAGG
ATGGAGGTAACCCCAACGTGGACTGGTGGGCGAAAGTCCGACACTCGCTG
CACTTTGGAGGGGTCAAAGCGGTCGCAGGGGCGGAGGCTATTGGGGAGGT
AAAGGGTAGCAAGTAACCTGGCGCAAGGCTATAGCTCGTGTCGTGCGTTG
GATCGCACCGCTGCCTATGTACCTCCCCAAGCCTTAGGTGTCTGGGATAC
TCTGCCGGCTTCGGCCAGAACCTAACCTTTTTTACGTTGATTCGCTTGTC
CGCTACGAACGCTTCGATGCATTGGTCATTTCCTTTGATGGATCGCATGT
GCTACTCTCGTAATCGGTTGATACAGCCTGCGTGGGCCATGGTCTCTGTT
CGCGTACGCTGCCAAACACCACTTTTTCATGACTCGCATCGCTGCCACCC
GTAGCACCTGAACGTCCCATCGAGTACTTTTTCAGCGGGTTGGTTGCCCA
AGCGCCTGCCGTCACACAGGACCCAGCTGACTCCGTGCATGCGCGGACCA
TTTTCACTTTCTCTCCTGCAACGCCCATCGTTTCTTGTTTCGCTCGGAAA
AAAAATGCGACCGCTCTGTCTCATAGGTGGTGGCCAACACACTGGGCTTG
AACGATTCTAAGTATCAATACGTTATCGACGCACTTGAGGCGGACGAAAT
CCGCGAAAAGCGGGAGCAAAGGGACGAAGAAGACAGAAGACACGTGAGTT
GCAGCTCTGGCGATGCTGAGTGTTTGTGACGCTGTCGATGCAGGTGTAGC
GAAATGTATCAAGTATGTTGCATGTGGTGGTTGCCGTGATGGGCGAAGAC
TACAGAGGGTGTCTTTTCAGGGCTGAGCTTTTTGTTAGGACCGTGCAGTC
TTTGATCCAGAACAAAATCGAATATGTGGTACATTTCCACGGCCGTGATC
AAAATGTTAATAGATACCAAGTACACTTTTAACGTTAAGGACCAAATTGT
GCTGTTGGCTTCTCACCCCACCCCTCCCTGTGACAACGTTTTCCTTGTCC
CACGCCACACCCGGAAGATGGCGCTCGAAGAAGAGGCCGCGAAAGTAAGG
GAGCGCCGGGAGCAGCAGGACGGAGAAGTCAAGCAGGACTCGGGAGCGAT
AGAGTTGGGAGACACCAGGCTCTCGTTGCCCGACAGCGGTGGCGAGACGG
CGCTCCCCGAGGAATCGACGGCGTAGACTGGGGTATTGAAGGTCACCTGG
CGGAACTGCCGCAACGCCATACAAGTTGTCGTGGGAGTTGTGTGAATAAT
CGGCTAAAAGCACAAATTTGGATCTTGCGGTGTCCGCAACGCAGTCATGT
GTCGGGGCGATAATGTAAGTATTTTTATGTTCCCAGAGTTTGGTATGAAT
TTGTTCCTCGCACGATGCACATGAGACATGAGAGCGAGACGAGGCGCGTC
TTTGAATGTCGCATGCTGTCCATCTTGGAGCTTGGCTCCAAAGAACGGCC
CATGTTGTTACGGGGTTTGAGTGGAAGAATCTGGGTGGTAAATATACTAG
TCTAGAGCAGGAGTGCCACTTCATGGCGGGAGCTGCAAGTCGACGTGGTA
GGATCATCAGATGAGGCTTAAACGGCAGGCCCCTCCATACAGGCACCGCC
CGTGGTCTTCGGTCTACCAACGAGAGCAAGGCAGTAGCAAGCACTCATCT
TTTTTTTTTTTTTCGATACGTAATACGTGGTGAAGGTCTTAAGGGACTGC
TACGAGGTCAATACGCACACCATTTGGCTTCCGCCTGAGGTAATAATTGC
CACACGAAAGGAAACTGCCTTAACGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8666:3471..6447+

>mRNA_Ecto-sp13_S_contig8666.20113.1 ID=mRNA_Ecto-sp13_S_contig8666.20113.1|Name=mRNA_Ecto-sp13_S_contig8666.20113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8666:3471..6447+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAGTGGCGGATGCCCCTGCGACTGAAGTGGCAGCGGCGGCCCCGGT
GCAAGCAATTGACGGGCAAGAGGGGGAGCCGGTGGAGCCTTACTATTGGG
AGGATGGAGGTAACCCCAACGTGGACTGGTGGGCGAAAGTCCGACACTCG
CTGCACTTTGGAGGGGTCAAAGCGGTCGCAGGGGCGGAGGCTATTGGGGA
GGTGGTGGCCAACACACTGGGCTTGAACGATTCTAAGTATCAATACGTTA
TCGACGCACTTGAGGCGGACGAAATCCGCGAAAAGCGGGAGCAAAGGGAC
GAAGAAGACAGAAGACACATGGCGCTCGAAGAAGAGGCCGCGAAAGTAAG
GGAGCGCCGGGAGCAGCAGGACGGAGAAGTCAAGCAGGACTCGGGAGCGA
TAGAGTTGGGAGACACCAGGCTCTCGTTGCCCGACAGCGGTGGCGAGACG
GCGCTCCCCGAGGAATCGACGGCGTAG
back to top