prot_Ecto-sp13_S_contig86653.20111.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig86653.20111.1
Unique Nameprot_Ecto-sp13_S_contig86653.20111.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length55
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86653.20111.1 vs. uniprot
Match: D7FTH7_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH7_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.040e-18
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0 
Query:    7 GFHAACVNLKIVPAGSWICSGCDQSPGATARRKTLAEQTARTVGYARE 54
            GFHAACVNL  +P GSW+CS CDQSPGA ARRK +AEQTAR V + +E
Sbjct:   55 GFHAACVNLDAIPEGSWVCSSCDQSPGANARRKVVAEQTARAVTFTKE 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86653.20111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTH7_ECTSI9.040e-1870.83Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..46
e-value: 1.8E-6
score: 29.6
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 6..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86653contigEcto-sp13_S_contig86653:358..522 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86653.20111.1mRNA_Ecto-sp13_S_contig86653.20111.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig86653 331..522 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig86653.20111.1 ID=prot_Ecto-sp13_S_contig86653.20111.1|Name=mRNA_Ecto-sp13_S_contig86653.20111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MEGETTGFHAACVNLKIVPAGSWICSGCDQSPGATARRKTLAEQTARTVG
YAREA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD