mRNA_Ecto-sp13_S_contig86653.20111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86653.20111.1
Unique NamemRNA_Ecto-sp13_S_contig86653.20111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86653.20111.1 vs. uniprot
Match: D7FTH7_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH7_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.630e-17
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   46 GFHAACVNLKIVPAGSWICSGCDQSPGATARRKTLAEQTARTVGYARE 189
            GFHAACVNL  +P GSW+CS CDQSPGA ARRK +AEQTAR V + +E
Sbjct:   55 GFHAACVNLDAIPEGSWVCSSCDQSPGANARRKVVAEQTARAVTFTKE 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86653.20111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTH7_ECTSI2.630e-1770.83Zinc finger protein n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86653contigEcto-sp13_S_contig86653:331..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size192
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.696358-UTR-Ecto-sp13_S_contig86653:330..3571681464138.696358-UTR-Ecto-sp13_S_contig86653:330..357Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86653 331..357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.7081785-CDS-Ecto-sp13_S_contig86653:357..5221681464138.7081785-CDS-Ecto-sp13_S_contig86653:357..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86653 358..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86653.20111.1prot_Ecto-sp13_S_contig86653.20111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86653 358..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86653.20111.1

>prot_Ecto-sp13_S_contig86653.20111.1 ID=prot_Ecto-sp13_S_contig86653.20111.1|Name=mRNA_Ecto-sp13_S_contig86653.20111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MEGETTGFHAACVNLKIVPAGSWICSGCDQSPGATARRKTLAEQTARTVG
YAREA
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mRNA from alignment at Ecto-sp13_S_contig86653:331..522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86653.20111.1 ID=mRNA_Ecto-sp13_S_contig86653.20111.1|Name=mRNA_Ecto-sp13_S_contig86653.20111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86653:331..522+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGGGGTGCACTACGGGTGTACACAGATGGAGGGCGAAACGACAGGGTT
CCATGCCGCCTGCGTGAACCTAAAAATCGTGCCCGCGGGCAGCTGGATTT
GCTCCGGCTGTGACCAGTCGCCAGGGGCCACCGCACGGCGCAAGACGCTG
GCCGAGCAAACCGCGAGAACCGTCGGCTACGCGAGAGAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86653:331..522+

>mRNA_Ecto-sp13_S_contig86653.20111.1 ID=mRNA_Ecto-sp13_S_contig86653.20111.1|Name=mRNA_Ecto-sp13_S_contig86653.20111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86653:331..522+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGCGAAACGACAGGGTTCCATGCCGCCTGCGTGAACCTAAAAAT
CGTGCCCGCGGGCAGCTGGATTTGCTCCGGCTGTGACCAGTCGCCAGGGG
CCACCGCACGGCGCAAGACGCTGGCCGAGCAAACCGCGAGAACCGTCGGC
TACGCGAGAGAGGCC
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