mRNA_Ecto-sp13_S_contig12423.2011.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12423.2011.1
Unique NamemRNA_Ecto-sp13_S_contig12423.2011.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: D8LHC5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHC5_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 2.960e-147
Identity = 213/215 (99.07%), Postives = 215/215 (100.00%), Query Frame = 1
Query:   13 MEPLNEANGYSSKNAFKGRLVFGVYGKDSPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            MEPLNEANGYSSKNAFKGRLVFGVYGK+SPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAP+LDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML
Sbjct:    1 MEPLNEANGYSSKNAFKGRLVFGVYGKESPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPSLDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 215          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: A0A6H5JYA6_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYA6_9PHAE)

HSP 1 Score: 427 bits (1097), Expect = 1.030e-146
Identity = 214/219 (97.72%), Postives = 218/219 (99.54%), Query Frame = 1
Query:    1 QVRIMEPLNEANGYSSKNAFKGRLVFGVYGKDSPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            +VRIMEPLNEANGYSSKNAFKGRLVFGVYGK+SPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASS +RPHDRRGLLTRDRLSRGPEFG+TLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML
Sbjct:  110 EVRIMEPLNEANGYSSKNAFKGRLVFGVYGKESPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSNNRPHDRRGLLTRDRLSRGPEFGITLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 328          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: A0A836CET4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET4_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.040e-64
Identity = 105/215 (48.84%), Postives = 147/215 (68.37%), Query Frame = 1
Query:   13 MEPLNEANGYSSKNAFKGRLVFGVYGKDSPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            MEPL EANGYSS +A  G+LV  ++G ++PK  E FL Y+  + ++  PSYAS   T++ PG  L+GG+I+GLN I++ G  +L+Y G +    PS     S    HD RGLLT+ +L  GPEF +TLG  P LD S+ VFGR+++GE+ L  LE+VP+Y   S  EEGS+A + ++AQ  A +++G+NV RDERAVDRTG+ +RRVD++ CG L
Sbjct:    1 MEPLTEANGYSSASAPTGKLVLELFGTEAPKTVEAFLSYITPEPADSGPSYASSLFTRLVPGRQLDGGRISGLNQISLAGSSQLQYFGRIFPATPSF---ESNALRHDCRGLLTKSKLEAGPEFTITLGPCPELDASNVVFGRVVEGEETLRALEQVPLYSSGSTQEEGSVADNWYRAQRSASLFVGRNVLRDERAVDRTGTFLRRVDVVRCGRL 212          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: A0A7S4DA21_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA21_HETAK)

HSP 1 Score: 175 bits (444), Expect = 2.110e-48
Identity = 105/221 (47.51%), Postives = 132/221 (59.73%), Query Frame = 1
Query:    4 VRIMEPLNEANGYSSKNAFKGRLVFGVYGKDSPKAAENFLRYVRA--DRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALD-GSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            ++I   LNE+N ++S N +KGRLVFG++G+ +P++    LRY  A  D     P+YA G          LEGG+I GL  +NI G  + EY G+V+   PS  E S     H+RRGLLTRD  S GPEFGVTL  AP LD G   VFG LL+GEDVL  LE VP Y   S    GSLA D ++AQ    +  G+    DERAV +   L+RRVDI +CGML
Sbjct:  106 IQIASILNESNNFTSYNDYKGRLVFGLWGEAAPRSVRTALRYFDAGPDPEAPGPTYARGAAMTSRGPTLLEGGRIKGLQQVNIAGSLQYEYRGKVIVG-PSAFELSP--TKHNRRGLLTRDSFSTGPEFGVTLADAPELDDGRRVVFGELLEGEDVLQALELVPTYQAGSTQPRGSLADDWYRAQRDFFLRAGQAA-GDERAVGQVNKLLRRVDIKACGML 322          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: R1E2A0_EMIHU (PPIase cyclophilin-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E2A0_EMIHU)

HSP 1 Score: 169 bits (429), Expect = 1.640e-46
Identity = 95/224 (42.41%), Postives = 136/224 (60.71%), Query Frame = 1
Query:    4 VRIMEPLNEANGYSSKNAFKGRLVFGVYGKDSPKAAENFLRYVRAD----RSNGE-PSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGE-DVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            +R++   +  +G     A +GR+ F +YG D+PKA E F  +V+ D    RS+ + PSY +G  T + PGV L+GG+I GL +    G ++ EYG  +V PL  ++E +  +  HDRRGL+TR + S GPEFG+TLG AP LD   EV GRL Q    +L  +E +P   G+S  E GS+A + F AQ      + K +  D RA DRTG L+RRV+I++CG+L
Sbjct:   75 LRVIRSFDVDSGVLEDAAVRGRVQFELYGNDAPKAVERFKGFVKGDIGQFRSSSDGPSYRTGAFTTLRPGVILQGGRINGLRLTEFAGAQQYEYGSRLV-PLDGVVEVN--ELKHDRRGLITRRQFSAGPEFGITLGPAPQLDSGWEVIGRLSQDSAGLLPLIEGLPYITGRSLEEPGSVADNVFNAQKSLFTSLSKTI-GDSRAEDRTGQLLRRVEIVNCGLL 294          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: A0A7S0LLF5_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LLF5_9EUKA)

HSP 1 Score: 161 bits (408), Expect = 2.000e-43
Identity = 90/206 (43.69%), Postives = 126/206 (61.17%), Query Frame = 1
Query:   55 AFKGRLVFGVYGKDSPKAAENFLRYVRAD-----RSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            A +GR+VF +YG  +P+  + F  +++        S   PSY S    ++ PGV +EGG+I GL++    GQ E +Y   ++   P ++E +  D  H RRGLLTR  L+ GPEFGVTL AAP+LDGS EV G L +G+++LA +E +P   G+S  E GSLA   F+AQ      + K V  D RA DRTG L+RRV+I +CG+L
Sbjct:   92 AVRGRMVFDLYGDAAPRGTDRFADFIKGSVGQFKGSVDGPSYRSSSFERLRPGVLVEGGRITGLDLTPFAGQLEYQYRSRLLQLRP-VMEVN--DIRHTRRGLLTRRILNSGPEFGVTLAAAPSLDGSWEVIGELQEGDELLALIEGLPFISGKSLEEPGSLADQVFQAQKSLFTSLSKGV-GDPRAADRTGQLLRRVEITNCGLL 293          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: A0A0M0K0Y1_9EUKA (Peptidyl-prolyl isomerase g n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0Y1_9EUKA)

HSP 1 Score: 160 bits (405), Expect = 2.690e-43
Identity = 98/209 (46.89%), Postives = 123/209 (58.85%), Query Frame = 1
Query:   55 AFKGRLVFGVYGKDSPKAAENFLRYV-----RADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRL---LQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            A + RL FG++G  +PK    FL +V     +   S G P+Y+  Q  K++PGV LEGGKIAGL      GQ E EY G ++ PL  +LEAS  D  HDRRGLLTR   + GPEFG+TL  AP LDG+HEV G+L      E +L  LE +P   G+S   EG+ A+  F AQ      + K V  D RA DRTG L+RRV+I  CG L
Sbjct:   62 ATRARLTFGLFGDSAPKGVAKFLDFVDGTPGQFKASGGGPAYSGAQFEKLQPGVLLEGGKIAGLRQTKFAGQLEYEYLGRLL-PLRPVLEAS--DVLHDRRGLLTRSIFAIGPEFGITLAPAPNLDGTHEVIGQLEPNAANEALLTILEGLPYITGKSMEGEGTAANAVFTAQREFFTGLSKAV-GDSRAEDRTGQLLRRVEITKCGRL 266          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: A0A7S0JDD1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JDD1_9EUKA)

HSP 1 Score: 154 bits (390), Expect = 8.290e-42
Identity = 88/202 (43.56%), Postives = 124/202 (61.39%), Query Frame = 1
Query:   67 RLVFGVYGKDSPKAAENFLRYVRADRSNGE-----PSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            R+VFG+Y + +P   E F+ +V+      +     PSY S    ++ PGV  EGG+I GL++    GQ E +Y   ++ PL  +LE +  D  H +RGLLTR  L+ GPEFGVTL AAP+LDGS EV G L QG ++L  +E++P   G+S  + GSLA   F+AQ      + K+V  D RA DRTG L+RRV+I +CG++
Sbjct:    9 RMVFGLYNEAAPLGTERFVNFVQGSVGQFKGTLDGPSYRSSCFERLRPGVVAEGGRITGLDLTPFAGQLEYQYRSRLL-PLRPVLEVN--DLKHSQRGLLTRRILNAGPEFGVTLAAAPSLDGSWEVIGELQQGGELLHLIEELPFITGKSVEQPGSLAEQVFQAQKSVFSSLSKSV-GDSRASDRTGQLLRRVEITNCGVI 206          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: A0A7S0HZC1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HZC1_9CRYP)

HSP 1 Score: 145 bits (366), Expect = 1.390e-36
Identity = 81/200 (40.50%), Postives = 123/200 (61.50%), Query Frame = 1
Query:   61 KGRLVFGVYGKDSPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDR-TGSLMRRVDILSCGML 657
            +GR+VFG+YGK SP+  ++FL++V A+   G P+Y+SG   + E G ++EGG+I GL+   + GQE  ++ G VV PL  +LE +S    HDR+ LL+  + + GPEF +TL + P LD S+ VFG ++ GE+ +  + K+P   G+S   EGS A   +KAQ      + K V  D R  +   G L+RRV+I  CG++
Sbjct:  168 RGRIVFGLYGKQSPQTVQHFLKFVTANYGEG-PAYSSGMFYRHEAGRWIEGGRINGLSTTQVAGQETFQWNGRVV-PLAPILETNS--LRHDRKFLLSHRKFNPGPEFDITLSSTPELDASNTVFGEVIAGEEYVQEIVKLPFVTGKSLDPEGSPADSWWKAQREFFRNVAK-VSGDTRVTNTFPGKLLRRVEITKCGLI 362          
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Match: W7U5A0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5A0_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.710e-36
Identity = 87/208 (41.83%), Postives = 119/208 (57.21%), Query Frame = 1
Query:   58 FKGRLVFGVYGKDSPKAAENFLRYVRADRSNGEPSYASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEASSGDRP-----HDRRGLLTRDRLSRG--PEFGVTLGAAPALD-GSHEVFGRLLQGEDVLARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRTGSLMRRVDILSCGML 657
            F GR+VFG++GK +P     F++Y +A      PSYA   LTK  PGV +E G+I GL  I I G  E EYG +       LL A   D P     HDRRGLLT+        P F +TLG  PALD G   VFG LL+G++ L  +EKVP+Y  +S  E+    +  F  Q +  + + K++  DERAV+R GS ++RV++L+ G+L
Sbjct:  163 FVGRMVFGLFGKAAPIVVGEFIKYTKAPYGGNFPSYAFSSLTKRTPGVSVEAGRIKGLKEIEIAGTREYEYGDQ-------LLGAKGMDEPTLALKHDRRGLLTKSSTQDAVDPVFEMTLGPQPALDNGDSIVFGILLEGQEALDAMEKVPIYTYESAGEQPEALNSLFTNQKKLFLSMAKSL-NDERAVNRQGSFLKRVEVLNVGLL 362          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12423.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHC5_ECTSI2.960e-14799.07Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5JYA6_9PHAE1.030e-14697.72PPIase cyclophilin-type domain-containing protein ... [more]
A0A836CET4_9STRA2.040e-6448.84Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S4DA21_HETAK2.110e-4847.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R1E2A0_EMIHU1.640e-4642.41PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S0LLF5_9EUKA2.000e-4343.69Peptidyl-prolyl cis-trans isomerase n=1 Tax=Coccol... [more]
A0A0M0K0Y1_9EUKA2.690e-4346.89Peptidyl-prolyl isomerase g n=1 Tax=Chrysochromuli... [more]
A0A7S0JDD1_9EUKA8.290e-4243.56Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0HZC1_9CRYP1.390e-3640.50Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
W7U5A0_9STRA2.710e-3641.83Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12423contigEcto-sp13_S_contig12423:201..4844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score422.9
Seed ortholog evalue8.8e-116
Seed eggNOG ortholog2880.D8LHC5
Model size1115
KEGG koko:K03768
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009579,GO:0009987,GO:0016018,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031977,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0044877,GO:0061077,GO:0071704,GO:0140096,GO:1901564
Exons6
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-24_001370.1
EC5.2.1.8
Cds size648
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12423.2011.1prot_Ecto-sp13_S_contig12423.2011.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12423 734..4832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.4168181-UTR-Ecto-sp13_S_contig12423:200..6251681462661.4168181-UTR-Ecto-sp13_S_contig12423:200..625Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12423 201..625 -
1681462661.429992-UTR-Ecto-sp13_S_contig12423:703..7331681462661.429992-UTR-Ecto-sp13_S_contig12423:703..733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12423 704..733 -
1681462661.506611-UTR-Ecto-sp13_S_contig12423:4832..48441681462661.506611-UTR-Ecto-sp13_S_contig12423:4832..4844Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12423 4833..4844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.4400914-CDS-Ecto-sp13_S_contig12423:733..8411681462661.4400914-CDS-Ecto-sp13_S_contig12423:733..841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12423 734..841 -
1681462661.4515295-CDS-Ecto-sp13_S_contig12423:1285..13871681462661.4515295-CDS-Ecto-sp13_S_contig12423:1285..1387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12423 1286..1387 -
1681462661.4613574-CDS-Ecto-sp13_S_contig12423:2596..28271681462661.4613574-CDS-Ecto-sp13_S_contig12423:2596..2827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12423 2597..2827 -
1681462661.4707937-CDS-Ecto-sp13_S_contig12423:3967..40811681462661.4707937-CDS-Ecto-sp13_S_contig12423:3967..4081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12423 3968..4081 -
1681462661.4827535-CDS-Ecto-sp13_S_contig12423:4739..48321681462661.4827535-CDS-Ecto-sp13_S_contig12423:4739..4832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12423 4740..4832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12423.2011.1

>prot_Ecto-sp13_S_contig12423.2011.1 ID=prot_Ecto-sp13_S_contig12423.2011.1|Name=mRNA_Ecto-sp13_S_contig12423.2011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MEPLNEANGYSSKNAFKGRLVFGVYGKDSPKAAENFLRYVRADRSNGEPS
YASGQLTKMEPGVFLEGGKIAGLNIINIGGQEELEYGGEVVAPLPSLLEA
SSGDRPHDRRGLLTRDRLSRGPEFGVTLGAAPALDGSHEVFGRLLQGEDV
LARLEKVPVYGGQSRLEEGSLASDAFKAQNRALVYIGKNVFRDERAVDRT
GSLMRRVDILSCGML*
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mRNA from alignment at Ecto-sp13_S_contig12423:201..4844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12423.2011.1 ID=mRNA_Ecto-sp13_S_contig12423.2011.1|Name=mRNA_Ecto-sp13_S_contig12423.2011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4644bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12423:201..4844- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTCGAATTATGGAGCCCCTTAACGAAGCAAACGGCTACAGCAGCAA GAACGCCTTCAAGGGAAGGCTGGTGTTCGGAGTGTACGGGAAGGACTCTC CAAAGGTAGGTCGAGAGTCGGTGTCAGTAAACCCAACGCGCGCGTACGAA TCAGTCCTGCCGTCGTTTAGTTTTCTTTCCAACAAAGCGAATCTCTCGTA GGAGGGAGCGCGAAACGCATCAGGGTTCATCAGCGTCGGCGAGTCGTACC GGAGCTGGCACTGGTGACAACAACATCTACTTCTTATGCCGCGTTTTTCT TGGGGGTACTCTCAACCCAAACACGAACCGTGCTGTCCGGCAGCGCATCA TATCTTAGTTGTTGAGAACAGAAACGAGGGCGGGGCACTGCAGATGGGTG AGGGGGCTTAGGGGGAGATCAAGGCTCCTCTGCTGCTGCCACGGGTTTAC CACCATGCCTTGAGGAGAGAGGCAGGCAGACAGACAGACAGACAGAGGGG GAAAGAGACCGAGACACAGGAAGAGCAAGAAAGAGGCAGAAAGACAGAGA GAGGGAGAGAAAGATAGGTAGAGAGACAGGCGGATATACACAGACAGGGA GACTGGGATCACCGTTCATCGGATGGGATGGTAACCAAGACGCCTTCGGC CCGACATCGTTTCCACCAGTCTATCGTTCCTATTTATTTAGTTCGATCGC CACGCCTCTCTTTTCGGCGTTCTCATCAATGCATCGTAATCAAGAGTCGA ATCCCACCACCAGGCGGCCGAGAACTTCTTGCGCTACGTGCGGGCGGATC GATCGAACGGGGAGCCCTCTTACGCGTCGGGGCAGCTAACGAAGATGGAG CCTGGCGTCTTCCTTGAGGGCGGAAAGGTAATACATGCAGAATTGGGGGA GGGGTCACTCATGGTAACGCATGCCGTAACTGGTAGGCCATTGGCCTAAT ACCAAGCCTACAAGTTGGGACCTGGCGCTGGCCATCGTCCTTGCGTTTGC TGTGCCAAACAGAGAAGGGGGTATCGGGGTACTTGTCGCGACGATGGTCT GCTTCTAGGTAGTCGCACGCCAAATGGGTGCTGCTGCTGACGATAGCCGA CGTGGGCTTATCAGCACTCCTGTTGTTTGTTGCCACAATTACTTTGCGGC GGGGAAATCATGAACGCATGCATTCATCTCGTCCCGGGGGCTTGGCTAGT CTGTCCAACACTTTACCTTGCTTGTGCCGCAATATTCCGGGGGTGGGGTT GCAAAGGTCGCGATGGCTCGCAAGCTAGACGCGGTCGCCGAGTATTCTCG TGCTCGCCAAGGCCCCGCTTTGTGCGTCCTCACAGGCTATCGGTGGTGTC GGCGCTTGCACGAGGTACATTGTCACGCTAGCGAACTCTTGTCGAGAGCG TTTGTGGGCACAAAGTTCCTTGCACCTTATCCAGCTTTGGTCAGGCAAGG CCAAGCGGAAGAGTCCCGCGTCAAGTCCATCAAAACCCGTGACATCCAAT CCGCGTGTCCCCCGGAGATCTCGGAGATCCGCGTTCTGCCCAGTGCACAG GCTGGTCACACGTGTCTTGTTTCAGCTCTGCTTGTGTGGACGAGAGCGTG TGCACCTTGGACCCTTATCTCAAGCATGGCAAGGGCTGGGTGACGGTCGC ACCAGCAAGCCCGAAGGCGCACACAACCCAGTCGATCTCGACTACTTCTG CGAGATACCTTAGGTTGTATGAGATTCCGCACCCCCCGGGCTCATACGAC AAAAAGGGTTGAGAACATGTACGAGCTTATGATGCGCTTTCGGGGAAGCT GTGGACGAAATGGTTCCAACTTCGCCTTTTCAGCTCCGTGAGCTGATGAT GGTGCGGGGTAGTCATGTTTTGAAAAATTGGTCCTTGGGAGGTGAGTACC TACCTCGTGTGACCGACAGTAAGACCGCGACTTGTCTCGTCCCGTCCTCC CGTACCCCTCCGACTCATCACCCCCCCCCCCAATATCCTTCACGCGCCTC CCCCTCAATTCATCCAGATTGCCGGTCTTAACATCATCAACATCGGGGGG CAAGAAGAGCTGGAGTATGGGGGGGAAGTCGTAGCCCCCCTCCCCTCCCT GCTGGAGGCGTCCTCGGGAGACCGGCCCCACGACCGGCGGGGTTTGCTAA CGAGGGACAGGCTTTCGCGGGGGCCGGAGTTCGGGGTAACTCTGGGGGCG GCCCCGGCGTTGGACGGCAGCCACGAGGTCTTCGGCAGGCTGCTGCAGGT GCGTGCGTGTCCCTCGAAAGCGTGGGACCATGGTTCTGCTGCTACACCTC CTACAGTTTTCTTGCGATGTGTGGAGAGTTCCCGCTAACGGTCAACAGGG GGGAGGGGGGGGCGTTGTTGTTGCCTTTTACCTTACATGTCTCCGCTCAG TACCTTCTGATATCCGTATTGGTCCAACTGACGCGGACGCTCTCCATGTT GGTACACGTCGCTGTTGCCTTTAGAGGAAGCCGTGCGTTCCTTCTTATTT TCATGTTGTTTTCCGCGTGGCGTCGCTTGTGCAGGACTGTCATGACTAAA GACGCGTGTCATTTCTTTCTGAACAAAGGAACGATGTTGAGCTACTTTTG AGTAGAGGGCGCACCGGTTGTATTTTGCCAAGACCGCGACTATGACATGC AGGGATGTTGCGGTCAACAAACGATTGGCCGAAGTTTGTGTATGCGCGCC ACGCTGTCAAGAGGGAAGGGTTTGTAGCACACTCGTCGCCGTTTTCGAGA CACACATGATGTTTTTTTTTTGTCCTGTTGAAGCGTAATTCAGGTTTCAC GCCACGCCCTATATATATCGGTAGGATAGGTAGAGTAGGGGAGACACTTT TTAGTCACCTTTGGCAAGGGAGGAAGGATCGATTGGCCATCGGTGATCGT TCATGTGGGAACGATTCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCT AACCGCTAAGGCATGCACAATATTAGAGTACGCCCCCCCTATATTATTGA CGTCACGGCCGAACGTGGTTTCGAAAAATCTCCTCTTGAACGCGGGGAGT TGGTTGACTTAACCTGGGCATCTTTGAAAGGGGAGTTTTTCATCGCAAGG GTTTTTTTGGCTGCCCGTGAGGGGATGGTGAGAAGCGCTGCGGTGAACGG GGCACCCGCGAGCAGCGTCAAGCGTACCATCTACATGTGTAAGCGATTGA TGGTTGTTGTCCTACGCCCTTGCCACCCCCTGTTGAATGTGAAACGTCTT GTTGGCTGGGATTCCCATGGCATATCTGGATTGGCACAGGAAACGCAAGG ACGATGACCAGGTTCTGGTCCATCGTTGTGAAACGTAGCCTGGGCCGGCG AAAACCCGGTATATCGCTCGGTCCCAGCATTATAGGGATGCGAAGCCAAT GGTCTTTTGATTGCATGCGCTACCCCCGCCCACCCCCTTAATCATTTGTT TTCTCAGGGAGAAGATGTGCTGGCGAGGCTAGAGAAAGTTCCAGTGTATG GCGGCCAAAGCAGACTAGAGGAGGGAAGTTTAGCGTCCGACGCGTTCAAG GCTCAAAACGTGAGAGCAAGGATAATCAAGATGCGCGCACGTAGTACGGA GCCTAGTTTCGCCTTTTTTTGCCGTGGTCGCTCTGATCTATGTTGTCTTT CAAACATGAGAGCGCCCTGTGTGCCGCACTCGAAATCGAGCCCAGAATCT GTCGCCTTGTTTTTTTTGGTGCGATATTTGCGGCAAAACGTGGCCAAGTG TTTCCTTCCACGATCGACATGTCGTGTTGCTCTGTCAGTAGCCCCTCACC ACCCCCACCGCCATCGCCTGCCATCCCCCATCCTATCCCCCCCCCCCGGA AAATGGACGTGGACCGGACCCTCGCGGCCGGGCGGTGCTAACCTCATCGG CTGCGCCACTGCCGATGGCATGCGATATCGCCACCCTACGCTGACGGCAA CGTTTGCTTTTCCCGTTGTTTCGTGAATGGCGCTTGGATCGCCGCAACGA CAGCGCGCCTTGGTGTATATTGGAAAGAACGTTTTCAGAGACGAACGTGC GGTGGACCGCACAGGCTCTCTTATGCGAAGAGTGGACATCCTCAGTTGCG GGATGTTGTGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAAGAGAAAGAGAAAGAGAAGGGCTTTATACCGTGAACGGTACTGCTGTT TGTTTGGTGAAACCAACGGCGTTGGGTGGTTCGCGTGCGAAAAGTGCTCT AATCTTTCCGCTGTACTGCTGTATCCTTTGTAGCTTTCATCGTGATGATA GAAAATGTGATGTCGTGACGTGCTCATCTACGGGATGCTGTGGCTTCGGG CACTGCAAGTAGTGAGTTGAACATTTACCACGCGTGCTCGAGACGACTGC TTGGGGGAGGGGGGCGAACTTCTTGATTTCGCGAGTTTGCACGTTCCCCC GATTGATTGTGGGAGCTTAGGGTGGGTTTTTCGCCCATGATGTTGTGTAC CATCGACCCGACATTTTGGAAACCGCCCGGACGGAAACAGTCTAAAATGA TGAGTGACGCTCTGCGGGTGTGTTTGTTTGGCGTGTTTTCCTCTAAGATG AGCGCCAAAAGAATGCCGAATTTCATCGCGTCATTGATGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12423:201..4844-

>mRNA_Ecto-sp13_S_contig12423.2011.1 ID=mRNA_Ecto-sp13_S_contig12423.2011.1|Name=mRNA_Ecto-sp13_S_contig12423.2011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12423:201..4844- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCCCTTAACGAAGCAAACGGCTACAGCAGCAAGAACGCCTTCAA
GGGAAGGCTGGTGTTCGGAGTGTACGGGAAGGACTCTCCAAAGGCGGCCG
AGAACTTCTTGCGCTACGTGCGGGCGGATCGATCGAACGGGGAGCCCTCT
TACGCGTCGGGGCAGCTAACGAAGATGGAGCCTGGCGTCTTCCTTGAGGG
CGGAAAGATTGCCGGTCTTAACATCATCAACATCGGGGGGCAAGAAGAGC
TGGAGTATGGGGGGGAAGTCGTAGCCCCCCTCCCCTCCCTGCTGGAGGCG
TCCTCGGGAGACCGGCCCCACGACCGGCGGGGTTTGCTAACGAGGGACAG
GCTTTCGCGGGGGCCGGAGTTCGGGGTAACTCTGGGGGCGGCCCCGGCGT
TGGACGGCAGCCACGAGGTCTTCGGCAGGCTGCTGCAGGGAGAAGATGTG
CTGGCGAGGCTAGAGAAAGTTCCAGTGTATGGCGGCCAAAGCAGACTAGA
GGAGGGAAGTTTAGCGTCCGACGCGTTCAAGGCTCAAAACCGCGCCTTGG
TGTATATTGGAAAGAACGTTTTCAGAGACGAACGTGCGGTGGACCGCACA
GGCTCTCTTATGCGAAGAGTGGACATCCTCAGTTGCGGGATGTTGTGA
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