prot_Ecto-sp13_S_contig866.20105.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig866.20105.1
Unique Name	prot_Ecto-sp13_S_contig866.20105.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	232

Homology

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 433 bits (1114), Expect = 3.690e-153
Identity = 223/231 (96.54%), Postives = 227/231 (98.27%), Query Frame = 0

Query:    1 MVSSQLFLGTAATLIASSAAFVAPITAPRSSTTRVAASSTLKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGILEHIVSRI 231
            MV+SQLFLGTAATLIASSAAFVAPI APRSS  RVAASST KMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSE+FHPLFMGPAYIGPAVEHAQQIATVYPLFWVAS+GMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDG+GILEHIVSRI
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.360e-78
Identity = 135/228 (59.21%), Postives = 169/228 (74.12%), Query Frame = 0

Query:    1 MVSSQLFLGTAATLIASSAAFVAPIT----APRSSTTRVAASSTLKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGIL 224
            MV++QLFLG+AATLIASS AFVAP+     AP SS      SS LKM+AGSDY A+LPGAPFG   +GK FDP  L+   DP  IKKWREAE+KHGRV+MLA++G+LV+E +HPLFMGP YIGPAV+H Q+I+  YP FWV S+  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P+D     +++++EL+ GR AMIG+ GM+VQE+++   IL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASS------SSALKMSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 3.760e-76
Identity = 132/222 (59.46%), Postives = 164/222 (73.87%), Query Frame = 0

Query:    3 SSQLFLGTAATLIASSAAFVAPITAPRSSTTRVAASSTLKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGIL 224
            SS +FLGTAATLIASS AFVAP+ A RS+    +AS+ LKM+AGSDY A+LPGAPFG   +GK FDP  L+   +P  IK WREAE+KHGRV+MLA VG++V+E +HPLFMGP YIGPAV+H Q+I+  +P FW  S+  +AFIE  TI  A+   SPVTG G L+ EY PGDLGFDPL L PKD      +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    4 SSNMFLGTAATLIASSTAFVAPM-AVRSAAPASSASA-LKMSAGSDYVATLPGAPFG---DGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 5.510e-74
Identity = 130/226 (57.52%), Postives = 166/226 (73.45%), Query Frame = 0

Query:    1 MVSSQLFLGTAATLIASSAAFVAPITAPRSSTTRVAASSTLKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGILEH 226
            MV+SQ+FLGTAA LIASS AFVAP+ A RS+    AAS+ LKM+AGSDY A+LPGAPF   ++GK FDP  L+    P  IKKWREAE+KHGRV+MLA++GILV+E +HPLFMG  +IGPA+ H Q+I+  +P FW  S+  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P       +++++EL+ GR AMIG+ GM+ QE+V+GQ IL +
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPV-AVRSAAPASAASA-LKMSAGSDYVATLPGAPF---SDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 5.230e-73
Identity = 129/222 (58.11%), Postives = 160/222 (72.07%), Query Frame = 0

Query:    3 SSQLFLGTAATLIASSAAFVAPITAPRSSTTRVAASSTLKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGIL 224
            SS +FLGTAATLIASSAAFV P+ A RS+    +AS+ LKM+AG+DY A+LPG      A GK FD   LA   DP  IK WREAE+KHGRV+MLA VG++V+E +HP FMGP YIGPAV+H Q+I   +P FW  S+  +AFIE  TIK A+   SPVTG G L+ EY PGDLGFDP  + PKD      +Q++EL+ GR AMIG++GM+VQE+V+GQ IL
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPM-AVRSAAPASSASA-LKMSAGTDYLATLPG------ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.580e-65
Identity = 109/211 (51.66%), Postives = 153/211 (72.51%), Query Frame = 0

Query:    8 LGTAATLIASSAAFVAPITAPRSSTTRVAASSTLKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVV 218
            +G A+   AS  AF+ P   P + + R   S+  +M+AGSDY ++LPGAPF   A+GK +DP GL++  DPE IKKWREAE+KHGRV+MLA+VG+LV+E FHPLF+GP YIGPA+ H ++I   +P FW  ++  IA++E + I   +  + PVTG G ++ +Y PGDLGFDPLGLAP+D  +  +++++EL+ GR AMIG+ GMIVQE+V
Sbjct:   60 VGMASWCFASCEAFIVPT--PTTLSARPT-STAARMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.420e-55
Identity = 114/224 (50.89%), Postives = 145/224 (64.73%), Query Frame = 0

Query:    1 MVSSQLFLGTAATLIASSAAFVAPITAPRSSTTRVAASSTLKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGIL 224
            MV+SQ+F+GTAATLIASS AFVAP+ A RS TT   +S  LKM+AGSDY A+LPGAPF   ++GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E                            FW  S+  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPM-AVRSVTT-TPSSPGLKMSAGSDYVATLPGAPF---SDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 8.890e-54
Identity = 86/158 (54.43%), Postives = 114/158 (72.15%), Query Frame = 0

Query:   67 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGIL 224
            FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  S+  +AF+E  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:   38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 5.780e-53
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 0

Query:   65 KYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGILEHI 227
            K FDP GLA   +   IK WREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  +P FW  S+  +A IE  TI  A+   S VTG G L+ EY PGDLGFDPL L P D      +Q++EL+ GR AMIG+ G +VQE+V+   IL+ +
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFL 177

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BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.440e-51
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 0

Query:   67 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGQGIL 224
            FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  S+  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:  234 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig866.20105.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQG7_ECTSI	3.690e-153	96.54	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	1.360e-78	59.21	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	3.760e-76	59.46	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	5.510e-74	57.52	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	5.230e-73	58.11	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	2.580e-65	51.66	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	3.420e-55	50.89	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G7S5_ECTSI	8.890e-54	54.43	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	5.780e-53	53.37	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	1.440e-51	55.06	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..216 e-value: 9.1E-36 score: 123.8
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 54..231 e-value: 3.9E-38 score: 133.3
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 10..220
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 10..220
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..231
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.584
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 40..228
None	No IPR available	TMHMM	TMhelix		coord: 128..146
None	No IPR available	TMHMM	TMhelix		coord: 91..113
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig866	contig	Ecto-sp13_S_contig866:17915..20701 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig866.20105.1	mRNA_Ecto-sp13_S_contig866.20105.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig866 17282..20726 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig866.20105.1 ID=prot_Ecto-sp13_S_contig866.20105.1|Name=mRNA_Ecto-sp13_S_contig866.20105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
MVSSQLFLGTAATLIASSAAFVAPITAPRSSTTRVAASSTLKMTAGSDYA
ASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAV
GILVSEIFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASVGMIAFIEGQT
IKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELD
LGRYAMIGVLGMIVQEVVDGQGILEHIVSRI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln