mRNA_Ecto-sp13_S_contig8656.20097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8656.20097.1
Unique NamemRNA_Ecto-sp13_S_contig8656.20097.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8656.20097.1 vs. uniprot
Match: D8LJ96_ECTSI (Glyoxalase family protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ96_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 5.410e-73
Identity = 117/146 (80.14%), Postives = 119/146 (81.51%), Query Frame = 1 
Query:    1 QHPPTRRGIIVNVMVESADKFVDFMGKAAKAKSCALQAAEEVVPFQRPSRTSGQVAPHTHTTG---VSEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT 429
            +HPPTRRGIIVNVMVESADKFVDFMGK  KAK   L          RPSRTS   AP+TH      V EYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPH RLHLNTDDP GVGAKLVEHGAKELTKMAEQFWGAT
Sbjct:   18 KHPPTRRGIIVNVMVESADKFVDFMGKTTKAKIWRLTDGGGDA-LSRPSRTSYLAAPYTHNHRGFPVQEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHARLHLNTDDPIGVGAKLVEHGAKELTKMAEQFWGAT 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8656.20097.1 vs. uniprot
Match: A0A6H5L888_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L888_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 4.850e-63
Identity = 108/143 (75.52%), Postives = 110/143 (76.92%), Query Frame = 1 
Query:    1 QHPPTRRGIIVNVMVESADKFVDFMGKAAKAKSCALQAAEEVVPFQRPSRTSGQVAPHTHTTGVSEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT 429
            +HPPTRRGIIV+VMVESADKFVDFMGKAAKAK                                 EYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT
Sbjct:   18 KHPPTRRGIIVDVMVESADKFVDFMGKAAKAK---------------------------------EYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8656.20097.1 vs. uniprot
Match: A0A6H5JNL3_9PHAE (AraC_E_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNL3_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.390e-37
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:  232 MHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT 429
            MHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT
Sbjct:    1 MHLAIDIGGVALYVEELGNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT 66
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8656.20097.1 vs. uniprot
Match: UPI0018693315 (VOC family protein n=1 Tax=Mycolicibacterium baixiangningiae TaxID=2761578 RepID=UPI0018693315)

HSP 1 Score: 53.1 bits (126), Expect = 5.180e-6
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:  187 GVSEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDTGAISTPHG------RLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWG 423
            G +EY R P++DGK++H A+DI G  + + +   + + G  STP         +HL   D      + V+ GA  L  + EQFWG
Sbjct:   30 GATEYGRVPNQDGKLIHAALDINGSMVMLNDDFPEYNDGKPSTPTALGGSPVTIHLQVTDVDTKFQQAVDAGATVLMAVEEQFWG 114
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8656.20097.1 vs. uniprot
Match: F6EQM7_HOYSD (Conserved protein n=2 Tax=Hoyosella TaxID=697025 RepID=F6EQM7_HOYSD)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-5
Identity = 31/103 (30.10%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:  118 EEVVPFQRPSRTSGQVAPHTHTTGVSEYFRFPDEDGKIMHLAIDIGGVALYVEEL-GNKMDTGAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWG 423
            E V P    S  +  +  +    G  E  R+ D DG+I+H  + IGGV + V++  G       ++     L L TDD   V  +++EHGA  +  + +QF+G
Sbjct:    5 ETVYPRLVVSDGAAAIGFYVKALGAEERCRYTDNDGRIVHSEVVIGGVTVAVKDADGTDPSPDNVNGTPVILALYTDDAKAVADRMMEHGATVIFPVRDQFYG 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8656.20097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJ96_ECTSI5.410e-7380.14Glyoxalase family protein (Partial) (Fragment) n=1... [more]
A0A6H5L888_9PHAE4.850e-6375.52VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JNL3_9PHAE4.390e-37100.00AraC_E_bind domain-containing protein n=2 Tax=Ecto... [more]
UPI00186933155.180e-634.12VOC family protein n=1 Tax=Mycolicibacterium baixi... [more]
F6EQM7_HOYSD1.230e-530.10Conserved protein n=2 Tax=Hoyosella TaxID=697025 R... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8656contigEcto-sp13_S_contig8656:5840..6679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size432
Hectar predicted targeting categoryother localisation
Exons3
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.5968957-CDS-Ecto-sp13_S_contig8656:5839..59351681464137.5968957-CDS-Ecto-sp13_S_contig8656:5839..5935Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8656 5840..5935 +
1681464137.6093764-CDS-Ecto-sp13_S_contig8656:6130..62291681464137.6093764-CDS-Ecto-sp13_S_contig8656:6130..6229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8656 6131..6229 +
1681464137.6202428-CDS-Ecto-sp13_S_contig8656:6442..66791681464137.6202428-CDS-Ecto-sp13_S_contig8656:6442..6679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8656 6443..6679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8656.20097.1prot_Ecto-sp13_S_contig8656.20097.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8656 5840..6679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8656.20097.1

>prot_Ecto-sp13_S_contig8656.20097.1 ID=prot_Ecto-sp13_S_contig8656.20097.1|Name=mRNA_Ecto-sp13_S_contig8656.20097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
QHPPTRRGIIVNVMVESADKFVDFMGKAAKAKSCALQAAEEVVPFQRPSR
TSGQVAPHTHTTGVSEYFRFPDEDGKIMHLAIDIGGVALYVEELGNKMDT
GAISTPHGRLHLNTDDPAGVGAKLVEHGAKELTKMAEQFWGAT*
back to top

mRNA from alignment at Ecto-sp13_S_contig8656:5840..6679+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8656.20097.1 ID=mRNA_Ecto-sp13_S_contig8656.20097.1|Name=mRNA_Ecto-sp13_S_contig8656.20097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8656:5840..6679+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACCCTCCGACTCGCAGGGGCATCATCGTGAATGTCATGGTCGAGAG
CGCGGACAAGTTTGTCGACTTCATGGGAAAAGCCGCCAAAGCCAAGGTTT
GAAAAGCTCGTCCGTAACAAACACACTTGGTGCGTTTTCGCGGGCTTTTT
GGACTGACTTTTTGCCCGCAGCAGTGTTATCCCGCGATCTAAAGAACATC
AATCAATACACCTGTAGACTTGCTACCACAAGCAGGCAGTTGCCACGTCG
GTCGTGGACGACATTGCTAGATAGGCTTGCTAGATAGGTAGAGTTGCGCC
TTGCAGGCTGCCGAGGAGGTGGTGCCCTTTCAGCGACCCAGCAGGACCTC
GGGTCAAGTGGCACCGCACACACACACCACGGGGGTTTCCGTTTGTGCTG
GTGCAAAGTATCGCGCGGTTCTTGTTGCCTCGAAAGGTTCCGGTGGATTT
GTTGTGTTTTAAGAAAAGCATTGAAACAGGGGTGCACCCTAACTGCCCTG
TTCGATATTCTGCACAACGAAGGCCATTTCTTTCGCAACGTTCTTCAAGT
CGAAACGCAATAGACCAGATGCTGCCTACCCCCCCCCGCTCGTCCTTCGT
CAGGAGTACTTCCGCTTCCCCGACGAGGATGGCAAGATCATGCACCTCGC
CATAGACATCGGCGGCGTAGCGCTGTACGTCGAGGAGCTCGGCAACAAGA
TGGACACCGGCGCCATCAGCACCCCTCACGGCCGCCTGCACCTCAACACC
GACGACCCGGCCGGCGTTGGTGCCAAGCTGGTGGAGCACGGTGCCAAGGA
GCTCACCAAGATGGCCGAGCAGTTCTGGGGTGCCACGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8656:5840..6679+

>mRNA_Ecto-sp13_S_contig8656.20097.1 ID=mRNA_Ecto-sp13_S_contig8656.20097.1|Name=mRNA_Ecto-sp13_S_contig8656.20097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8656:5840..6679+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACCCTCCGACTCGCAGGGGCATCATCGTGAATGTCATGGTCGAGAG
CGCGGACAAGTTTGTCGACTTCATGGGAAAAGCCGCCAAAGCCAAGAGTT
GCGCCTTGCAGGCTGCCGAGGAGGTGGTGCCCTTTCAGCGACCCAGCAGG
ACCTCGGGTCAAGTGGCACCGCACACACACACCACGGGGGTTTCCGAGTA
CTTCCGCTTCCCCGACGAGGATGGCAAGATCATGCACCTCGCCATAGACA
TCGGCGGCGTAGCGCTGTACGTCGAGGAGCTCGGCAACAAGATGGACACC
GGCGCCATCAGCACCCCTCACGGCCGCCTGCACCTCAACACCGACGACCC
GGCCGGCGTTGGTGCCAAGCTGGTGGAGCACGGTGCCAAGGAGCTCACCA
AGATGGCCGAGCAGTTCTGGGGTGCCACGTGA
back to top