mRNA_Ecto-sp13_S_contig8656.20096.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8656.20096.1
Unique NamemRNA_Ecto-sp13_S_contig8656.20096.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8656.20096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8656contigEcto-sp13_S_contig8656:99..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size571
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.5334673-UTR-Ecto-sp13_S_contig8656:98..1971681464137.5334673-UTR-Ecto-sp13_S_contig8656:98..197Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8656 99..197 +
1681464137.5557153-UTR-Ecto-sp13_S_contig8656:536..6691681464137.5557153-UTR-Ecto-sp13_S_contig8656:536..669Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8656 537..669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.5449972-CDS-Ecto-sp13_S_contig8656:197..5361681464137.5449972-CDS-Ecto-sp13_S_contig8656:197..536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8656 198..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8656.20096.1prot_Ecto-sp13_S_contig8656.20096.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8656 198..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8656.20096.1

>prot_Ecto-sp13_S_contig8656.20096.1 ID=prot_Ecto-sp13_S_contig8656.20096.1|Name=mRNA_Ecto-sp13_S_contig8656.20096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MGMATAHETSSTTTTATNRHQGKRSIASRAVSVLGTTADPPAKAPIINHA
VSWLFGSWLGSTGLASRARLGLARSETFPQPHCEQQACCGQQRLSAAKAL
ASRTITQRASLA*
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mRNA from alignment at Ecto-sp13_S_contig8656:99..669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8656.20096.1 ID=mRNA_Ecto-sp13_S_contig8656.20096.1|Name=mRNA_Ecto-sp13_S_contig8656.20096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8656:99..669+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAACGGGCGTTCTTACACACGCATCGCCGGATATGCTGTGCTCTATCTA
ACATGAGGGTGAAGCAGAGCAGCAACAGGCTCGACGACCGTCCGAACTAA
TGGGCATGGCAACAGCACACGAAACATCTTCCACGACGACAACGGCGACG
AATCGGCACCAAGGAAAGCGATCCATCGCATCAAGAGCTGTTTCTGTGCT
TGGAACAACAGCGGATCCTCCCGCGAAAGCACCGATCATCAACCATGCAG
TTAGTTGGCTCTTTGGCTCGTGGCTCGGTTCCACAGGGCTAGCTTCTAGG
GCCCGTCTTGGTTTAGCCCGCAGCGAAACATTCCCGCAGCCGCATTGCGA
GCAGCAGGCTTGCTGCGGACAGCAACGTCTTTCGGCGGCCAAAGCTCTTG
CCTCGCGAACGATAACACAGCGGGCATCGCTTGCTTAGGAGCAGCGTTGT
TCAACTCCTAGCTCACGGTCCTCCCACAGAACGGCAAACAAGAGGCGAGC
CCAACCAACAGACCTTGACGCACCACCACCACCAACACACACAAAGCAGC
GGTACAGAGTACACATGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8656:99..669+

>mRNA_Ecto-sp13_S_contig8656.20096.1 ID=mRNA_Ecto-sp13_S_contig8656.20096.1|Name=mRNA_Ecto-sp13_S_contig8656.20096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8656:99..669+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATGGCAACAGCACACGAAACATCTTCCACGACGACAACGGCGAC
GAATCGGCACCAAGGAAAGCGATCCATCGCATCAAGAGCTGTTTCTGTGC
TTGGAACAACAGCGGATCCTCCCGCGAAAGCACCGATCATCAACCATGCA
GTTAGTTGGCTCTTTGGCTCGTGGCTCGGTTCCACAGGGCTAGCTTCTAG
GGCCCGTCTTGGTTTAGCCCGCAGCGAAACATTCCCGCAGCCGCATTGCG
AGCAGCAGGCTTGCTGCGGACAGCAACGTCTTTCGGCGGCCAAAGCTCTT
GCCTCGCGAACGATAACACAGCGGGCATCGCTTGCTTAG
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