mRNA_Ecto-sp13_S_contig8654.20095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8654.20095.1
Unique NamemRNA_Ecto-sp13_S_contig8654.20095.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8654.20095.1 vs. uniprot
Match: D7FID4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FID4_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.510e-86
Identity = 135/152 (88.82%), Postives = 138/152 (90.79%), Query Frame = 1 
Query:    1 MNEASLLRALRQYRKVRGPDFHQPASRSNQGKIENGDGGVEKRQPLTKGERAEAEKALAXXXXXXXXGLESAHTQQALPEGDAGTGADADITRPDLIDPVDFLKEFDAWVDGKYPGDRGSSTKVKVAFRKQHRAVVSKLNLEDIEEIAQAMQ 456
            MNEASLLRALRQYRKVRGPDFHQPA+RSNQGKIENG+GGVEKRQPLTK ERAEAEK LA        GLESAHTQQALP GDAG GADAD TRPDLIDPV+FLKEFDAWVDGKYPGDRG STKVKVAFRKQHRAVVSKLNLEDIEEIAQAMQ
Sbjct:    1 MNEASLLRALRQYRKVRGPDFHQPATRSNQGKIENGNGGVEKRQPLTKEERAEAEKVLAEAAAAGGGGLESAHTQQALPGGDAGAGADADTTRPDLIDPVEFLKEFDAWVDGKYPGDRGRSTKVKVAFRKQHRAVVSKLNLEDIEEIAQAMQ 152
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BLAST of mRNA_Ecto-sp13_S_contig8654.20095.1 vs. uniprot
Match: A0A836CKU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.670e-19
Identity = 62/155 (40.00%), Postives = 85/155 (54.84%), Query Frame = 1 
Query:    4 NEASLLRALRQYRKVRGPDFHQPASRSNQGKI-----ENGDGGVEKRQPLTKGERAEAEKALAXXXXXXXXGLESAHTQQALPEGDAGTGADADITRPDLIDPVDFLKEFDAWVDGKYPGDRGSSTKVKVAFRKQHRAVVSKLNLEDIEEIAQAM 453
            +EAS +RAL +Y K+R  DF+ P     +  +     +       KR PLT  ERA  E   A        G +++        GDA TG  A        D  DFLK FDAWVD ++P DR ++TKVKVAFR++H+ +V+ LNLE+ EEIA+A+
Sbjct:    5 DEASFMRALSRYPKIRNSDFYLPLEEKPKSLLIAASRDASSTATAKRVPLTPEERAAQEAQRATQANSK--GADNSXXXXXX-XGDASTGETAGAV---AADSADFLKVFDAWVDSQWP-DRATATKVKVAFRREHKRLVASLNLEETEEIAEAL 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8654.20095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FID4_ECTSI1.510e-8688.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKU6_9STRA2.670e-1940.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8654contigEcto-sp13_S_contig8654:2394..6390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size459
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001480.1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.4805067-CDS-Ecto-sp13_S_contig8654:2393..25191681464137.4805067-CDS-Ecto-sp13_S_contig8654:2393..2519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8654 2394..2519 +
1681464137.4921849-CDS-Ecto-sp13_S_contig8654:3896..41601681464137.4921849-CDS-Ecto-sp13_S_contig8654:3896..4160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8654 3897..4160 +
1681464137.5045-CDS-Ecto-sp13_S_contig8654:6321..63901681464137.5045-CDS-Ecto-sp13_S_contig8654:6321..6390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8654 6322..6390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8654.20095.1prot_Ecto-sp13_S_contig8654.20095.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8654 2394..6390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8654.20095.1

>prot_Ecto-sp13_S_contig8654.20095.1 ID=prot_Ecto-sp13_S_contig8654.20095.1|Name=mRNA_Ecto-sp13_S_contig8654.20095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MNEASLLRALRQYRKVRGPDFHQPASRSNQGKIENGDGGVEKRQPLTKGE
RAEAEKALAAAAAAGGGGLESAHTQQALPEGDAGTGADADITRPDLIDPV
DFLKEFDAWVDGKYPGDRGSSTKVKVAFRKQHRAVVSKLNLEDIEEIAQA
MQ*
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mRNA from alignment at Ecto-sp13_S_contig8654:2394..6390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8654.20095.1 ID=mRNA_Ecto-sp13_S_contig8654.20095.1|Name=mRNA_Ecto-sp13_S_contig8654.20095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8654:2394..6390+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGGCAAGTCTCCTTCGGGCCCTGCGACAGTACCGGAAGGTTCG
AGGGCCGGACTTTCACCAGCCTGCCTCAAGGAGTAACCAGGGCAAGATAG
AGAACGGAGATGGCGGCGTAGAGAAGGTATGGATCATGCACGATTGCTGC
TGTGGGCTGCTATTACCATACGACTGCAGTGTGGACTACTGCTGTTGGTC
CTTGTCACATAGTAGACGCTCATAAGGCAAGTCTACGCCGCCGCAACCTG
GCACGGTGCGTGCAACGGCCTGGGTGAGCCCTACACCGTTGTCGGGGCTT
GAGACTACTGCTGTAGCAACATTGAGTACGTGCACTGCTAAGCGTTACGA
AGAACATGCACGCAAACTTTTGTGTCAGATGTTGCACTGCGTGCGGGTCG
CACAAGCAAAGGCGCGATAGGTGCGGATGCGGTTGTTCTTCCATACTGTG
AAAATCAACTGCTGTTGGACCAATCCCGCGACACGCTGCCGTTGAGACGG
AAGAGGGCAGTCTGATTGTCCGATTCAATTGCATGCGTTCAGTGGGTGAA
CTCGCAATCTTCTTGACGTTTGGACGTGAGTACGAACCTTGACGCAGTCA
CACGAAGTGGGATTTTTATAGCCCTCGAGCTGAGAGCGAAGGCGTAGAGG
GTGGATTCTACGAGCCTACTCTTCTGTGCGCCCTGCTCGGTGTCCAGCAA
CCGCCGCCAGACTTCGTATCCAGGCGATAGCCGTGTGTCCTTGACGCACA
CAAGCAGGTCGGAAGGCTCTACAATAAGAGGAGCGCACCGCTCTTCTATC
AACTCTGCACGAGTTCTCCTCTTATTATCCCCCCGCCCCCCCGCGGTTCG
AAGGAGAAGATATCTGTTCCTTTTTGCCGAAAGAGATGAACAAAATATAC
AAAATATACCAAGGATAAGTAGAGCAGATCAGTGTACAGAATGTTGAAAG
AAGGACTGGGTTCAAGGAGTACTTACATGGACCAATGGATGCCGGGACAA
AGCTGAAGGTCAAACTCAGGACCGGCTACATTAGGCTTGGAGAACGTAGT
CGAAGATATAGGAAGGTAGGCGATGAAGACGACAAGTTCAAATGTGATTG
CGGCTCCGTGTGCGAAGACCGTGTGCATGTAGTCGCGGGATGTCGGCTGT
ACAAGAAGGAGAGGGAACTGTACATGAATGAGCTGGGAAAAGTAGGAACA
GTACATGGAGACAATTGAGGCACGGGGTAGCCAGCAGACGTTAGCTGTAC
TTGCGCATATGAAGTGGGTTGAAAAGGCGGGAAGTGATAATAGATGGACT
AGTATAGGAAAGACGTTTTTAGCCACCTTTGGCAAAGTAGGAAGGAGCGA
TTGGCCGTCGGTGATCGGTCCTGTGGGAACAATGCTCCGGTCTCTCGAGG
ACGTGTGGTCAATGGTCTTCCCGCTAAGGCATGCAATACATAAGAGTATT
CCCCCTCCCCCACCGCCCCTTGTGCGCACCCCTGGGAAAACGACCACCCA
CAGCGACAACCACTCACCAAAGGAGAGAGGGCGGAGGCAGAAAAGGCATT
GGCGGCGGCAGCGGCGGCAGGAGGTGGTGGCCTGGAAAGCGCGCACACTC
AGCAGGCATTACCGGAGGGGGATGCAGGGACGGGAGCAGATGCAGACATT
ACGAGACCAGACCTTATCGATCCGGTCGACTTTTTGAAGGAGTTCGATGC
CTGGGTGGACGGGAAGTACCCCGGCGACAGAGGGAGTTCAACGAAGGTCA
AGGTGGCCTTCCGAAAGGTGACTAACGCGCCTATGTATCGTTGGCAAGGG
TTGTTGTCTAATGATCGTTAACGTTGACAAAGATTTACGCACTGTTCTGT
TTCATGGGTGTGATGGTTGAAAGTCTCATCGTCCAACATAGTCTCAGTTT
ATGGGTCAGTGATACGCTGGAGCTTTCCCGAATCAGGACCTTCAAAATCG
GTTCAGCTTCCGAAGGGTCCCGAAGAGGATTCTCTATTGGCGAAACAGAC
ACGCACACACCCGCACAAAATGCTTCCTTAGGTTAACGTGCATCTCGAAT
GTGCAAATAGTGGATCCGAGAGAGGGGTGGGCAAAAGGCTCGCAGTGTGC
CAACTCGGAACAGCTTGGGTGCCTCATGGCTAGCTCTTTTGTACTCCTTT
TTCGGAGTCAAGTTTTGTCGTACGCGTATAACTTCCCCCCCGAACGGATG
AGCTTTTCAGCGACTATACTGCAGGGAGCTACCCTCGACGCACCGATTTT
TTCAAGTTGCATCTGCTTCCTTATGTACATCCAGACGCCCAGGGGGCTTG
TAACCGTAAGGATGCGGGTCTTGGCACACTGTGCGATCGTCTTTTAAAAT
GTTTTCAGTATCGTTTTTTTTTTCGCACAGGGGTGCGCCGATACGTGCCA
TGTACCCGATACTTGCGCGGGACATGAATAAAATGTTTGGTCCTGAAAAC
ATGACGCACCCCCCCGTGCGATGACTCCGATCCGTGCGATTCTGAACAAG
CGCAGAGTGGCGAGTGGGGTGTATTGAACGCGCACCCCCGTGCCAATACT
CCGATGTGTGCGATCCTGAACAAATCACAGCAGAGATACACCAGCACTTC
CTGTGCGTGTGCAGGTATCGCAGCATCAGGACCGCAATACAACGAACACA
GACAGACACAGCAGCACACCAGCCCCCCAAAACAGAACATACAAAGCATA
TGCGGCGAAATAAGAATCCGAGGCGGCGAGGCTGCGAATTAACTTGAAAT
TCCCCAACACAGAGGTCTGTTCTTACACACACACCACAAACAAGCATCAC
GTTGGCTACGATGTGAGAGGGTGCAAGCGCGGACTTGCATTTTTCGTAGT
TCCGTAGTTGGTTGTGGTCGTGTGGTCTCGTGTGGTTTGTACGCGTTCTT
CGTTGATTGAGTAGAAACCGTTTGCCGATTCCGACAAACATAACGATGTT
GAACAACATCACTTGCAAATGACCAACGTTACCATGCCAAAGTACAGTAG
AGGAGCCCCTGATACAAGCGATGTACCTTGGCACAGTAATGGCCCGCGGC
AAAAGTTGTAAACCATGGTATCACCCAACCTCGCCGAAGGTATCGGTAAC
TCCGCACACCCCTGTGCGAAGTGAACGATACCTGTGCGATAATCAATTAA
ATCCCTTGAACCCCTACTTTTTTCCGCACCCCCTGTGCCAAGAGCCCGGC
CTGTGCGATGTAGCCGATCCGTGCCAAGACCCGCATCCTGACGGAAACTT
TGGACCTCAGGCCTGATCTCACTGGTGCTGGCGGCTACTGCAGTGTCTGA
ACACTCTGAAGCTGGGGTTGGTTTGAAACTTTTTTTCGATTGCACCGCAT
TCGGTCTTCATGGCACCATCGAGTTTTTTTTTTGTGGACCGGCGTAAAAA
TAAGTATATCCTCCAAACCCAGGTACCTCTAGAGGTGGGGAAACCCTAAT
TAGGACTGGGTGAAACTGACGGCCCAAGAAATGTTGGTTGAACTTGCTCG
AAAGTACCAAACCTCTGATTTTGGTTTCGATTTTCACCCCGTGTACAGTA
GGTGCGTGTTGTTTCACTCTTCTTCGGGCACCCCTCAGACCGCGCCACCG
TCGCGTGTTGCAAACTTTCAGTCAGCTTGGACGAAAAACACGCCGTACGT
CAAGCCAAAACGACGTTTGTGACAGTGCTGGTCCGAACAAATCATTTGAA
CACGACAAAGTCTCTGACAAATCTCTTGGCTTTTCTTTTCAACAAGACGA
AATCTCCGGCAAATCTCCTGACTATTTCGAAGTTTTTTGTGACATTTTTT
TTGTCGCGACACCTCAGGTAGCCGGTTGATTGACCACCAAATGATCAAAT
GATGACCTCGAGCGTTTCGTTGTTCGCCCGTCGCCCCCCACCCATGCCCG
ATGTCGCACCCCGCGTCGCCCCCAATAGCAACATCGGGCGGTCGTCTCCA
AGCTCAACCTCGAAGACATTGAAGAGATAGCGCAAGCCATGCAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8654:2394..6390+

>mRNA_Ecto-sp13_S_contig8654.20095.1 ID=mRNA_Ecto-sp13_S_contig8654.20095.1|Name=mRNA_Ecto-sp13_S_contig8654.20095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8654:2394..6390+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGAGGCAAGTCTCCTTCGGGCCCTGCGACAGTACCGGAAGGTTCG
AGGGCCGGACTTTCACCAGCCTGCCTCAAGGAGTAACCAGGGCAAGATAG
AGAACGGAGATGGCGGCGTAGAGAAGCGACAACCACTCACCAAAGGAGAG
AGGGCGGAGGCAGAAAAGGCATTGGCGGCGGCAGCGGCGGCAGGAGGTGG
TGGCCTGGAAAGCGCGCACACTCAGCAGGCATTACCGGAGGGGGATGCAG
GGACGGGAGCAGATGCAGACATTACGAGACCAGACCTTATCGATCCGGTC
GACTTTTTGAAGGAGTTCGATGCCTGGGTGGACGGGAAGTACCCCGGCGA
CAGAGGGAGTTCAACGAAGGTCAAGGTGGCCTTCCGAAAGCAACATCGGG
CGGTCGTCTCCAAGCTCAACCTCGAAGACATTGAAGAGATAGCGCAAGCC
ATGCAGTAA
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