prot_Ecto-sp13_S_contig8652.20093.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8652.20093.1
Unique Nameprot_Ecto-sp13_S_contig8652.20093.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length260
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8652.20093.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.250e-53
Identity = 184/243 (75.72%), Postives = 188/243 (77.37%), Query Frame = 0 
Query:   22 MTGRRRRHDTPSPLSERRGGXXXXXXXPRSSDRGGQQQHXXXXXXXXXXXPRRSAANHGGVGRTRYSSSXXXXXXXXGSKDSARRRKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGYDSNSSSDHGGEEGTGLGGDAATADAA----AAGGPTPATARSQIESGSPAAMVDEDAPTPPGSPAAASATKPSTEGPLAVNGGGGADDKEACEXXXXXXXXXXXXKTAVEAPAGG 260
            MTG RRRHDTPSPL ERRGG XXXXX PRS DRGGQQQH XXXXXXXXXXP RSAA+ GGV RTR+S  XXXXXXXX           XXXXXXXXXXXXXXXXXXXXX               GG YDSNSSSD GGEEGTG+  DAATADAA    AAGGPTPA ARSQIES SP A+VDE APTPPGSP AASAT PSTEGPLAVNGGGGADD EAC XXXXXXXXXXX KTAVEAPA G
Sbjct:    1 MTGTRRRHDTPSPLFERRGGRXXXXXPPRSGDRGGQQQHQXXXXXXXXXXPPRSAADDGGVSRTRHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYKHRKKGERKSRCGG-YDSNSSSDQGGEEGTGIARDAATADAANAAAAAGGPTPAIARSQIESASPPAIVDEHAPTPPGSPPAASATNPSTEGPLAVNGGGGADDTEACXXXXXXXXXXXXHKTAVEAPAAG 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8652.20093.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE1.250e-5375.72RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8652contigEcto-sp13_S_contig8652:2905..4208 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8652.20093.1mRNA_Ecto-sp13_S_contig8652.20093.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8652 2905..4208 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8652.20093.1 ID=prot_Ecto-sp13_S_contig8652.20093.1|Name=mRNA_Ecto-sp13_S_contig8652.20093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
RRVLQSIDTGVKRGGEPAASSMTGRRRRHDTPSPLSERRGGRHDTPSPPR
SSDRGGQQQHQRKRPRSRSQSPRRSAANHGGVGRTRYSSSDSEGEGDGGS
KDSARRRKKQRKGEKKARKREKKKAKKKSSSKSDKHRKKGDKKGRGGGYD
SNSSSDHGGEEGTGLGGDAATADAAAAGGPTPATARSQIESGSPAAMVDE
DAPTPPGSPAAASATKPSTEGPLAVNGGGGADDKEACEDEDAPTPPASPR
KTAVEAPAGG
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