mRNA_Ecto-sp13_S_contig8652.20093.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8652.20093.1
Unique NamemRNA_Ecto-sp13_S_contig8652.20093.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8652.20093.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 1.250e-53
Identity = 184/243 (75.72%), Postives = 188/243 (77.37%), Query Frame = 1 
Query:   64 MTGRRRRHDTPSPLSERRGGXXXXXXXPRSSDRGGQQQHXXXXXXXXXXXPRRSAANHGGVGRTRYSSSXXXXXXXXGSKDSARRRKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGYDSNSSSDHGGEEGTGLGGDAATADAA----AAGGPTPATARSQIESGSPAAMVDEDAPTPPGSPAAASATKPSTEGPLAVNGGGGADDKEACEXXXXXXXXXXXXKTAVEAPAGG 780
            MTG RRRHDTPSPL ERRGG XXXXX PRS DRGGQQQH XXXXXXXXXXP RSAA+ GGV RTR+S  XXXXXXXX           XXXXXXXXXXXXXXXXXXXXX               GG YDSNSSSD GGEEGTG+  DAATADAA    AAGGPTPA ARSQIES SP A+VDE APTPPGSP AASAT PSTEGPLAVNGGGGADD EAC XXXXXXXXXXX KTAVEAPA G
Sbjct:    1 MTGTRRRHDTPSPLFERRGGRXXXXXPPRSGDRGGQQQHQXXXXXXXXXXPPRSAADDGGVSRTRHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYKHRKKGERKSRCGG-YDSNSSSDQGGEEGTGIARDAATADAANAAAAAGGPTPAIARSQIESASPPAIVDEHAPTPPGSPPAASATNPSTEGPLAVNGGGGADDTEACXXXXXXXXXXXXHKTAVEAPAAG 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8652.20093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE1.250e-5375.72RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8652contigEcto-sp13_S_contig8652:2905..4208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size782
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001430.1
Cds size780
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.3934329-CDS-Ecto-sp13_S_contig8652:2904..34871681464137.3934329-CDS-Ecto-sp13_S_contig8652:2904..3487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8652 2905..3487 -
1681464137.4033093-CDS-Ecto-sp13_S_contig8652:4011..42081681464137.4033093-CDS-Ecto-sp13_S_contig8652:4011..4208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8652 4012..4208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8652.20093.1prot_Ecto-sp13_S_contig8652.20093.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8652 2905..4208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8652.20093.1

>prot_Ecto-sp13_S_contig8652.20093.1 ID=prot_Ecto-sp13_S_contig8652.20093.1|Name=mRNA_Ecto-sp13_S_contig8652.20093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
RRVLQSIDTGVKRGGEPAASSMTGRRRRHDTPSPLSERRGGRHDTPSPPR
SSDRGGQQQHQRKRPRSRSQSPRRSAANHGGVGRTRYSSSDSEGEGDGGS
KDSARRRKKQRKGEKKARKREKKKAKKKSSSKSDKHRKKGDKKGRGGGYD
SNSSSDHGGEEGTGLGGDAATADAAAAGGPTPATARSQIESGSPAAMVDE
DAPTPPGSPAAASATKPSTEGPLAVNGGGGADDKEACEDEDAPTPPASPR
KTAVEAPAGG
back to top

mRNA from alignment at Ecto-sp13_S_contig8652:2905..4208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8652.20093.1 ID=mRNA_Ecto-sp13_S_contig8652.20093.1|Name=mRNA_Ecto-sp13_S_contig8652.20093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8652:2905..4208- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCGAGTGCTACAGAGCATCGACACCGGGGTAAAGCGTGGAGGAGAACC
AGCAGCTTCCTCCATGACCGGCAGAAGAAGGAGGCACGATACTCCGAGCC
CTCTCTCCGAGAGAAGAGGCGGCAGGCATGACACCCCTAGCCCTCCTCGC
TCCAGCGACCGAGGGGGACAGCAGCAGCACCAGCGCAAACGGCCCAGGTA
TGCTACCGCGCCAGCGCGCCCTCTTCTCTCGATCTGGGGAAAGCACGCGG
CTGCGGTACGATCACCCAGCTCATGCGTTCGCATCCCGTCTGTTTGCATT
ATCCGCATCTGTTCGCTGGTAGCGAAGGTAGCGAACCGTCACCATCGACG
CATGTAGCTTATGTACCGTGTACGACACAAGAAGATAACACACCCCCTGG
ACTGAAATCTCAAATCTCGATTGATCAACAGCAGAAATAATCACAGCGCC
GAAAACGGCGGCGTTGAAGCCGTCTGGTTAAGTGCTCTCCGAAAACGTAT
CGTTTCGTTTATGCCTCCTCCTCGTCGTTGAGTAGTTGCGCGTTGATAAT
CGGTCCAGGGTGTGTGTTTTCCCGTGATGTATACGGTACGCCAAATCGCA
TGTTTGCAGCCTCCAATGTTAATTCAGCTCGTCGCATGGTGATGCCGACA
ACATGGCCGCGACCCGCAGCGGGAATCTGATGGACTCCTTCGTTGACTCT
TCCTGTAATCCCGAGTTTCAGGTCTCGATCTCAATCGCCTCGACGCTCCG
CTGCCAATCACGGTGGCGTCGGTAGAACAAGGTACAGCAGCAGTGACAGC
GAGGGTGAGGGCGACGGCGGCAGCAAAGACTCCGCGCGGCGGCGCAAGAA
GCAGAGGAAGGGCGAGAAGAAGGCGAGGAAAAGAGAGAAGAAAAAGGCCA
AGAAAAAGAGCAGCAGTAAGAGTGACAAGCACCGCAAGAAGGGGGACAAG
AAGGGGAGAGGCGGGGGCTACGACAGCAACAGCAGCAGCGATCATGGGGG
TGAAGAAGGCACCGGACTAGGCGGAGATGCAGCGACCGCAGACGCCGCCG
CTGCCGGAGGGCCGACGCCCGCAACAGCTCGCTCGCAAATAGAATCGGGA
TCTCCGGCAGCGATGGTGGACGAGGACGCGCCGACCCCGCCGGGAAGCCC
CGCCGCCGCCAGCGCAACAAAACCAAGCACGGAGGGACCGTTGGCCGTGA
ACGGAGGCGGCGGGGCGGACGATAAGGAGGCGTGTGAGGACGAAGACGCG
CCAACCCCGCCGGCCAGCCCTCGCAAGACAGCGGTGGAGGCACCCGCGGG
AGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8652:2905..4208-

>mRNA_Ecto-sp13_S_contig8652.20093.1 ID=mRNA_Ecto-sp13_S_contig8652.20093.1|Name=mRNA_Ecto-sp13_S_contig8652.20093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8652:2905..4208- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCGAGTGCTACAGAGCATCGACACCGGGGTAAAGCGTGGAGGAGAACC
AGCAGCTTCCTCCATGACCGGCAGAAGAAGGAGGCACGATACTCCGAGCC
CTCTCTCCGAGAGAAGAGGCGGCAGGCATGACACCCCTAGCCCTCCTCGC
TCCAGCGACCGAGGGGGACAGCAGCAGCACCAGCGCAAACGGCCCAGGTC
TCGATCTCAATCGCCTCGACGCTCCGCTGCCAATCACGGTGGCGTCGGTA
GAACAAGGTACAGCAGCAGTGACAGCGAGGGTGAGGGCGACGGCGGCAGC
AAAGACTCCGCGCGGCGGCGCAAGAAGCAGAGGAAGGGCGAGAAGAAGGC
GAGGAAAAGAGAGAAGAAAAAGGCCAAGAAAAAGAGCAGCAGTAAGAGTG
ACAAGCACCGCAAGAAGGGGGACAAGAAGGGGAGAGGCGGGGGCTACGAC
AGCAACAGCAGCAGCGATCATGGGGGTGAAGAAGGCACCGGACTAGGCGG
AGATGCAGCGACCGCAGACGCCGCCGCTGCCGGAGGGCCGACGCCCGCAA
CAGCTCGCTCGCAAATAGAATCGGGATCTCCGGCAGCGATGGTGGACGAG
GACGCGCCGACCCCGCCGGGAAGCCCCGCCGCCGCCAGCGCAACAAAACC
AAGCACGGAGGGACCGTTGGCCGTGAACGGAGGCGGCGGGGCGGACGATA
AGGAGGCGTGTGAGGACGAAGACGCGCCAACCCCGCCGGCCAGCCCTCGC
AAGACAGCGGTGGAGGCACCCGCGGGAGGC
back to top