mRNA_Ecto-sp13_S_contig86430.20085.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86430.20085.1
Unique NamemRNA_Ecto-sp13_S_contig86430.20085.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: D8LFG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.760e-30
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAA 156
            SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTC HPAAVTRLEWHPAA
Sbjct:  319 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCLHPAAVTRLEWHPAA 370          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A0L0FPK1_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPK1_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 3.050e-13
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 162
            SVE V F  THP++A+GG DG + +WDT     RHTC+H   V +++WHP+ P+
Sbjct:   70 SVECVRFSRTHPFMASGGLDGNLLIWDTTPFKLRHTCAHGEGVVKIQWHPSEPI 123          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: UPI000359C930 (angio-associated migratory cell protein n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359C930)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-10
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 162
            SVE VGFC TH +VATG   G +++W+  S + RH C HP  + +L W  ++P+
Sbjct:  295 SVETVGFCKTHEYVATGTLSGNLEIWNLPSKSVRHRCDHPYGIVKLRWSASSPI 348          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A6U2LRQ4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2LRQ4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.270e-10
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 SVEAVGFC---ATHPWVATGGTDGGMKVWDTVSGTCRHTCSH--PAAVTRLEWHPAAPV 162
            SVEAVGF        WVATGG +G +K+WD  +  CR TCSH    A+TR++WH   P+
Sbjct:  355 SVEAVGFAPAAVNANWVATGGVNGDLKIWDLTNNQCRQTCSHGEKVAITRMKWHSTMPL 413          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A7S3HSR6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSR6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.390e-9
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    4 VEAVGFC-ATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 162
            VE VGF      WVA+GG D  MKVWDT++GT R TC H  +V  L WH   P+
Sbjct:  363 VECVGFANGEFKWVASGGMDKTMKVWDTMTGTVRCTCLHGGSVVALVWHSTLPL 416          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A2R5GCM1_9STRA (Angio-associated migratory cell protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCM1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.290e-7
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 162
            SVE+V F  T P+VA+G TDG +K+WD  + TCR    H  AV R+ + P +P 
Sbjct:  342 SVESVDFSDTLPFVASGATDGTVKIWDLNTQTCRQVLRHEDAVVRVRFVPGSPT 395          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A7R9ZAF3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAF3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.690e-7
Identity = 32/70 (45.71%), Postives = 35/70 (50.00%), Query Frame = 1
Query:    1 SVEAVGFC--ATHP-WVATGGTDGGMKVWDTVSGT--CRHTCSHP-----------AAVTRLEWHPAAPV 162
            SVEAV F   + +P WVATGG DG +KVWD   GT   RH C                VT L WHP  PV
Sbjct:  112 SVEAVSFAPSSVNPHWVATGGVDGAVKVWDLTHGTGQMRHACRPSPQGEGEGSVDVGGVTSLRWHPTLPV 181          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: B8LPU3_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LPU3_PICSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.790e-6
Identity = 22/48 (45.83%), Postives = 28/48 (58.33%), Query Frame = 1
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEW 144
            S+E VGF  +  WVATGG D  + +W+  S + R TC H   V RL W
Sbjct:  286 SIECVGFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSW 333          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A1Y1WXG6_9FUNG (WD40 repeat-like protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WXG6_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 1.830e-5
Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 1
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 162
            SV AVGF  T  +VATGG DG +K+WD+ +G        P  +  ++WHP   +
Sbjct:  106 SVVAVGFNITGEYVATGGMDGIIKIWDSNTGNLLLNLDGPTEINWIQWHPKGNI 159          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A8J5S7P8_ZIZPA (Complex1_LYR_dom domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S7P8_ZIZPA)

HSP 1 Score: 49.7 bits (117), Expect = 2.530e-5
Identity = 21/48 (43.75%), Postives = 28/48 (58.33%), Query Frame = 1
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEW 144
            S+E VG   ++ WVATGG D  + +WD    + R TC+H   VT L W
Sbjct:  282 SLECVGISPSYNWVATGGMDQKLIIWDLARQSIRCTCNHDEGVTSLAW 329          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LFG5_ECTSI6.760e-3098.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0FPK1_9EUKA3.050e-1348.15Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
UPI000359C9301.240e-1044.44angio-associated migratory cell protein n=1 Tax=Ap... [more]
A0A6U2LRQ4_9STRA1.270e-1049.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3HSR6_9STRA5.390e-951.85Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R5GCM1_9STRA2.290e-746.30Angio-associated migratory cell protein n=1 Tax=Ho... [more]
A0A7R9ZAF3_9STRA9.690e-745.71Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8LPU3_PICSI2.790e-645.83Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A1Y1WXG6_9FUNG1.830e-540.74WD40 repeat-like protein n=1 Tax=Anaeromyces robus... [more]
A0A8J5S7P8_ZIZPA2.530e-543.75Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86430contigEcto-sp13_S_contig86430:384..575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score117.9
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog2880.D8LFG5
Model size192
KEGG koko:K14818
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.smooth muscle cell migration
EggNOG OGsKOG0296@1,KOG0296@2759
Cds size192
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.9284554-CDS-Ecto-sp13_S_contig86430:383..5751681464136.9284554-CDS-Ecto-sp13_S_contig86430:383..575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86430 384..575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86430.20085.1prot_Ecto-sp13_S_contig86430.20085.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86430 384..575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86430.20085.1

>prot_Ecto-sp13_S_contig86430.20085.1 ID=prot_Ecto-sp13_S_contig86430.20085.1|Name=mRNA_Ecto-sp13_S_contig86430.20085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHP
AAPVSRERGRHQW*
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mRNA from alignment at Ecto-sp13_S_contig86430:384..575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86430.20085.1 ID=mRNA_Ecto-sp13_S_contig86430.20085.1|Name=mRNA_Ecto-sp13_S_contig86430.20085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86430:384..575- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTCGAGGCGGTCGGCTTTTGCGCCACACACCCTTGGGTAGCGACGGG CGGTACGGACGGCGGGATGAAGGTGTGGGACACCGTGTCGGGGACTTGCC GACACACATGTTCGCACCCGGCGGCCGTGACGAGATTGGAGTGGCACCCT GCAGCTCCGGTGAGTAGGGAGAGAGGGAGACACCAGTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86430:384..575-

>mRNA_Ecto-sp13_S_contig86430.20085.1 ID=mRNA_Ecto-sp13_S_contig86430.20085.1|Name=mRNA_Ecto-sp13_S_contig86430.20085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86430:384..575- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTCGAGGCGGTCGGCTTTTGCGCCACACACCCTTGGGTAGCGACGGG
CGGTACGGACGGCGGGATGAAGGTGTGGGACACCGTGTCGGGGACTTGCC
GACACACATGTTCGCACCCGGCGGCCGTGACGAGATTGGAGTGGCACCCT
GCAGCTCCGGTGAGTAGGGAGAGAGGGAGACACCAGTGGTAG
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