prot_Ecto-sp13_S_contig86430.20085.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig86430.20085.1
Unique Nameprot_Ecto-sp13_S_contig86430.20085.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: D8LFG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 6.760e-30
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAA 52
            SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTC HPAAVTRLEWHPAA
Sbjct:  319 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCLHPAAVTRLEWHPAA 370          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A0L0FPK1_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPK1_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 3.050e-13
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 54
            SVE V F  THP++A+GG DG + +WDT     RHTC+H   V +++WHP+ P+
Sbjct:   70 SVECVRFSRTHPFMASGGLDGNLLIWDTTPFKLRHTCAHGEGVVKIQWHPSEPI 123          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: UPI000359C930 (angio-associated migratory cell protein n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359C930)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-10
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 54
            SVE VGFC TH +VATG   G +++W+  S + RH C HP  + +L W  ++P+
Sbjct:  295 SVETVGFCKTHEYVATGTLSGNLEIWNLPSKSVRHRCDHPYGIVKLRWSASSPI 348          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A6U2LRQ4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2LRQ4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.270e-10
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    1 SVEAVGFC---ATHPWVATGGTDGGMKVWDTVSGTCRHTCSH--PAAVTRLEWHPAAPV 54
            SVEAVGF        WVATGG +G +K+WD  +  CR TCSH    A+TR++WH   P+
Sbjct:  355 SVEAVGFAPAAVNANWVATGGVNGDLKIWDLTNNQCRQTCSHGEKVAITRMKWHSTMPL 413          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A7S3HSR6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSR6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.390e-9
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 0
Query:    2 VEAVGFC-ATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 54
            VE VGF      WVA+GG D  MKVWDT++GT R TC H  +V  L WH   P+
Sbjct:  363 VECVGFANGEFKWVASGGMDKTMKVWDTMTGTVRCTCLHGGSVVALVWHSTLPL 416          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A2R5GCM1_9STRA (Angio-associated migratory cell protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCM1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.290e-7
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 0
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 54
            SVE+V F  T P+VA+G TDG +K+WD  + TCR    H  AV R+ + P +P 
Sbjct:  342 SVESVDFSDTLPFVASGATDGTVKIWDLNTQTCRQVLRHEDAVVRVRFVPGSPT 395          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A7R9ZAF3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAF3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.690e-7
Identity = 32/70 (45.71%), Postives = 35/70 (50.00%), Query Frame = 0
Query:    1 SVEAVGFC--ATHP-WVATGGTDGGMKVWDTVSGT--CRHTCSHP-----------AAVTRLEWHPAAPV 54
            SVEAV F   + +P WVATGG DG +KVWD   GT   RH C                VT L WHP  PV
Sbjct:  112 SVEAVSFAPSSVNPHWVATGGVDGAVKVWDLTHGTGQMRHACRPSPQGEGEGSVDVGGVTSLRWHPTLPV 181          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: B8LPU3_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LPU3_PICSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.790e-6
Identity = 22/48 (45.83%), Postives = 28/48 (58.33%), Query Frame = 0
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEW 48
            S+E VGF  +  WVATGG D  + +W+  S + R TC H   V RL W
Sbjct:  286 SIECVGFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSW 333          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A1Y1WXG6_9FUNG (WD40 repeat-like protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WXG6_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 1.830e-5
Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 0
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHPAAPV 54
            SV AVGF  T  +VATGG DG +K+WD+ +G        P  +  ++WHP   +
Sbjct:  106 SVVAVGFNITGEYVATGGMDGIIKIWDSNTGNLLLNLDGPTEINWIQWHPKGNI 159          
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Match: A0A8J5S7P8_ZIZPA (Complex1_LYR_dom domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S7P8_ZIZPA)

HSP 1 Score: 49.7 bits (117), Expect = 2.530e-5
Identity = 21/48 (43.75%), Postives = 28/48 (58.33%), Query Frame = 0
Query:    1 SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEW 48
            S+E VG   ++ WVATGG D  + +WD    + R TC+H   VT L W
Sbjct:  282 SLECVGISPSYNWVATGGMDQKLIIWDLARQSIRCTCNHDEGVTSLAW 329          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86430.20085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LFG5_ECTSI6.760e-3098.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0FPK1_9EUKA3.050e-1348.15Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
UPI000359C9301.240e-1044.44angio-associated migratory cell protein n=1 Tax=Ap... [more]
A0A6U2LRQ4_9STRA1.270e-1049.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3HSR6_9STRA5.390e-951.85Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R5GCM1_9STRA2.290e-746.30Angio-associated migratory cell protein n=1 Tax=Ho... [more]
A0A7R9ZAF3_9STRA9.690e-745.71Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8LPU3_PICSI2.790e-645.83Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A1Y1WXG6_9FUNG1.830e-540.74WD40 repeat-like protein n=1 Tax=Anaeromyces robus... [more]
A0A8J5S7P8_ZIZPA2.530e-543.75Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..56
e-value: 2.6E-15
score: 58.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 14..28
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..36
score: 10.676
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..36
score: 10.285
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86430contigEcto-sp13_S_contig86430:384..575 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86430.20085.1mRNA_Ecto-sp13_S_contig86430.20085.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig86430 384..575 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig86430.20085.1 ID=prot_Ecto-sp13_S_contig86430.20085.1|Name=mRNA_Ecto-sp13_S_contig86430.20085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
SVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCSHPAAVTRLEWHP
AAPVSRERGRHQW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf