mRNA_Ecto-sp13_S_contig8638.20081.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A6H5KSZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ4_9PHAE) HSP 1 Score: 633 bits (1633), Expect = 2.760e-217 Identity = 333/365 (91.23%), Postives = 339/365 (92.88%), Query Frame = 1
Query: 607 TQEYFRARCLTCIICEEKGASIGCRVSSCNASVHFPCAIKASRFQCDEVLPDGRKNWYPCQESELPYFCPKHSAQRSVHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFQSALAAPGTANGKGHAGVSGXXXXXXXXXXXXXXXXXXXXQASAREQWQKVLPEVPLPRGLLTKPRDIDFTYVPATVD--------------SKSAQVRQGPEREKRCCTCTGPATCRDPRLCECLQQGRQYSSKGRLLDEGHPSQIYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLVLAGDMVGSVDQQGQHSTGVLVHRVRDWTERDFRQTH 1659
++EYFRARCL+CIICEEKGASIGCRVSSCNASVHFPCAIKASR EVLPDGRKNWYPCQESELPYFCPKH AQR+VHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPF SALAAPGTANGKG+AG XXXXXXXXXXXXXXXXXXXXQASAREQWQKVLPEVPLPRGLLTKPRDIDFTYVPATVD SKSAQVRQGPEREKRCCTCTGPATCRDPR+CECLQQGRQYSSKGRLLDEGHPSQIYECNVNCRCHVD CRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVC VAGQLVLAGDMVGSVDQQGQHST VLVHRVRDWTERDFRQTH
Sbjct: 103 SREYFRARCLSCIICEEKGASIGCRVSSCNASVHFPCAIKASR----EVLPDGRKNWYPCQESELPYFCPKHFAQRTVHEQDKEIARLSDLSQGNEPYPIPLEMGLALAMKTPFHSALAAPGTANGKGYAGXXXXXXXXXXXXXXXXXXXXXXXQASAREQWQKVLPEVPLPRGLLTKPRDIDFTYVPATVDRATAADLPLPARLLSKSAQVRQGPEREKRCCTCTGPATCRDPRICECLQQGRQYSSKGRLLDEGHPSQIYECNVNCRCHVDDCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCTVAGQLVLAGDMVGSVDQQGQHSTSVLVHRVRDWTERDFRQTH 463
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A7L2NG37_PYCJO (SETMR methyltransferase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7L2NG37_PYCJO) HSP 1 Score: 69.7 bits (169), Expect = 2.310e-9 Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 1
Query: 1231 CTCTGPATCRDPRLCECLQQGRQYSSKGRLLDEGHPSQ-----IYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLVLAGDMVGSVDQQGQHSTGVLV 1614
C+C ++C P+ C CL +G YSS G +L E Q ++ECN C C +GCRNRLVQRG+ ++V R +G WGV A+ IP FVC AG+++ + Q H ++
Sbjct: 24 CSCRS-SSCVAPQ-CPCLHRGHSYSSLGLVLAEQQEQQPFSRPVFECNSLCSCG-EGCRNRLVQRGLQLRLQVF------RTQRKG---WGVRALEPIPRGRFVCEYAGEVLGFAEAQRRSQAQAPHEPNYIL 144
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A674H9Z1_TAEGU (Uncharacterized protein n=37 Tax=Passeriformes TaxID=9126 RepID=A0A674H9Z1_TAEGU) HSP 1 Score: 65.5 bits (158), Expect = 1.050e-7 Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 1231 CTCTGPATCRDPRLCECLQQGRQYSSKGRLLDEGHPSQ----IYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLV 1551
C+C ++C P C CL +G YSS L E ++ECN C C +GC+NRLVQRG+ ++V R +G WGV A+ +PA SFVC AG+++
Sbjct: 62 CSCRS-SSCEAP-ACPCLSRGHSYSSLRLRLAEQQQQPFSRPVFECNSLCCCG-EGCQNRLVQRGLRLRLQVF------RTQRKG---WGVRALEPVPAGSFVCEYAGEVL 160
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A7K6FCL0_9CORV (SETMR methyltransferase (Fragment) n=1 Tax=Daphoenositta chrysoptera TaxID=254528 RepID=A0A7K6FCL0_9CORV) HSP 1 Score: 64.3 bits (155), Expect = 1.500e-7 Identity = 40/114 (35.09%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 1237 CTGPATCRDPRLCECLQQGRQYSSKGRLLDEGHPSQ-----IYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLVLAGD 1563
C+ + C P C CL+ G Y S RL G + ++EC CRC GC +RLVQRG+ ++ R +G WGV A++ +PA SFVC AG+++ A +
Sbjct: 24 CSCRSGCCAPPQCPCLRHGESYGSGPRLRLAGQRAPRFSRPVFECGSLCRCG-QGCGSRLVQRGLRLRLQAF------RTARKG---WGVRALQPVPAGSFVCEYAGEVLGAAE 127
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A669Q0X0_PHACC (Uncharacterized protein n=2 Tax=Phasianidae TaxID=9005 RepID=A0A669Q0X0_PHACC) HSP 1 Score: 60.5 bits (145), Expect = 5.440e-6 Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 1267 RLCECLQQGRQYSSKGRLLDEGHPSQIYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLV 1551
R C C+ GR +GR+L P + ECN CRC DGCRNR+VQRG+ ++V WGV A+ I SFVC AG+++
Sbjct: 106 RSCPCVWLGR----RGRVLRCAAP--LLECNAMCRCG-DGCRNRVVQRGLRVRLQVFKTAKKG---------WGVRALEPIAEGSFVCEYAGEVL 184
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A0D9XB16_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XB16_9ORYZ) HSP 1 Score: 60.8 bits (146), Expect = 9.150e-6 Identity = 40/129 (31.01%), Postives = 72/129 (55.81%), Query Frame = 1
Query: 1282 LQQGRQYSSKGRLLDEGHPSQ--IYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLVLAGDMVGSVDQQGQHSTGVLVHRV---RDW-TERDFR 1650
L++ + + S G+ +GHP + I EC C C++ C NR+VQRG+TCN++V + EG G WG+ + +P SF+C AG+++ + ++ + +++ + H+V DW +ER+ R
Sbjct: 478 LERAKNHGSPGQC--KGHPVKKFIKECWSKCGCNMQ-CGNRVVQRGITCNLQVFF-------TREGKG-WGLRTLDDLPKGSFICEYAGEILTSTELCERKVENARNAKHL--HQVLLDADWGSERELR 593
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A0D9XB17_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XB17_9ORYZ) HSP 1 Score: 60.8 bits (146), Expect = 1.080e-5 Identity = 40/129 (31.01%), Postives = 72/129 (55.81%), Query Frame = 1
Query: 1282 LQQGRQYSSKGRLLDEGHPSQ--IYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLVLAGDMVGSVDQQGQHSTGVLVHRV---RDW-TERDFR 1650
L++ + + S G+ +GHP + I EC C C++ C NR+VQRG+TCN++V + EG G WG+ + +P SF+C AG+++ + ++ + +++ + H+V DW +ER+ R
Sbjct: 665 LERAKNHGSPGQC--KGHPVKKFIKECWSKCGCNMQ-CGNRVVQRGITCNLQVFF-------TREGKG-WGLRTLDDLPKGSFICEYAGEILTSTELCERKVENARNAKHL--HQVLLDADWGSERELR 780
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: A0A850XVP4_AEGCA (SETMR methyltransferase (Fragment) n=1 Tax=Aegithalos caudatus TaxID=73327 RepID=A0A850XVP4_AEGCA) HSP 1 Score: 57.4 bits (137), Expect = 2.790e-5 Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 1231 CTCTGPATCRDPRLCECLQQGRQYSSKGRLLDEGHPSQIYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLV 1551
C+C ++C P C CL+ G S + ++ ++ECN C C +GCRNRLVQRG+ ++V G G WGV A+ +P +FVC AG+++
Sbjct: 24 CSCRS-SSCAAPE-CPCLRLG--LSPEELQQEQPFSRPVFECNSLCLCG-EGCRNRLVQRGLRLRLQVFRT--------RGKG-WGVRALEPVPRGAFVCEYAGEVL 116
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: UPI001F5C7041 (histone-lysine N-methyltransferase SUVR4-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C7041) HSP 1 Score: 58.5 bits (140), Expect = 4.300e-5 Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 1345 IYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLVLAGDM 1566
I EC C C+++ C NR+VQRG+TCN++V + G EG G WG+ + ++P +FVC AG+++ +M
Sbjct: 379 IKECWSKCGCNME-CGNRVVQRGITCNLQVFFTG-------EGTG-WGLRTLDELPKGAFVCEYAGEILTCTEM 443
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Match: UPI001F5E047C (probable inactive histone-lysine N-methyltransferase SUVR2 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5E047C) HSP 1 Score: 58.5 bits (140), Expect = 4.880e-5 Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 1345 IYECNVNCRCHVDGCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCIVAGQLVLAGDM 1566
I EC C C+++ C NR+VQRG+TCN++V + G EG G WG+ + ++P +FVC AG+++ +M
Sbjct: 527 IKECWSKCGCNME-CGNRVVQRGITCNLQVFFTG-------EGTG-WGLRTLDELPKGAFVCEYAGEILTCTEM 591 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8638.20081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8638.20081.1 >prot_Ecto-sp13_S_contig8638.20081.1 ID=prot_Ecto-sp13_S_contig8638.20081.1|Name=mRNA_Ecto-sp13_S_contig8638.20081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=550bp MGRNHPYVVHCSARFVPPHPPRRSFRSNCGLFPPQIPSACPPSPPPLPSTback to top mRNA from alignment at Ecto-sp13_S_contig8638:216..6399+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8638.20081.1 ID=mRNA_Ecto-sp13_S_contig8638.20081.1|Name=mRNA_Ecto-sp13_S_contig8638.20081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6184bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8638:216..6399+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8638:216..6399+ >mRNA_Ecto-sp13_S_contig8638.20081.1 ID=mRNA_Ecto-sp13_S_contig8638.20081.1|Name=mRNA_Ecto-sp13_S_contig8638.20081.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8638:216..6399+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |