mRNA_Ecto-sp13_S_contig86378.20080.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86378.20080.1
Unique NamemRNA_Ecto-sp13_S_contig86378.20080.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: D7FLK7_ECTSI (D-3-phosphoglycerate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLK7_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 3.030e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKSG 204
            VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKSG
Sbjct:  898 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKSG 965
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A835YXH9_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 9.720e-30
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKS 201
            VCLTLDL+  QVK +V +LE EGVA+D+GSYRDAP GLRIWCGATVEKED+EALMPWLEWAYTE KS
Sbjct:  886 VCLTLDLDAAQVKRVVAMLEKEGVAYDIGSYRDAPPGLRIWCGATVEKEDLEALMPWLEWAYTEVKS 952
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A7S3M6G6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6G6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.190e-29
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKS 201
            VCLTLDL KDQVK  V LLETEGVA+D+GSYRDAP GLRIWCGATV++ED+EAL PWL+WAY   K+
Sbjct:  189 VCLTLDLNKDQVKKFVSLLETEGVAYDIGSYRDAPDGLRIWCGATVDQEDLEALTPWLKWAYETVKA 255
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A7Y3E666_9GAMM (Phosphoserine transaminase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y3E666_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 1.030e-28
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAK 198
            VCLTLDLE DQVK MV LL+ EGVA DVG+YRDAPAGLRIWCGAT+E+ DVE LMPWL+WAY + K
Sbjct:  305 VCLTLDLEADQVKAMVSLLDAEGVAHDVGAYRDAPAGLRIWCGATIEESDVEKLMPWLKWAYQQVK 370
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A352Q6G5_9GAMM (Phosphoserine aminotransferase (Fragment) n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A352Q6G5_9GAMM)

HSP 1 Score: 108 bits (270), Expect = 1.720e-28
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKS 201
            VCLT+DL   Q+KTM  LL+ E  AFD+GSYRDAP GLRIWCGATV++ D+EALMPWLEWAY EA++
Sbjct:  100 VCLTVDLNPQQIKTMTSLLDDEQAAFDIGSYRDAPPGLRIWCGATVQRADLEALMPWLEWAYQEARA 166
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A7S1U0C8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0C8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.560e-28
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAK 198
            VCL+LDLE DQVK  V +L+TEG+A+D+GSYRDAP GLRIWCGATVE+ED+ AL PWL WAY   K
Sbjct:   89 VCLSLDLEPDQVKQFVSILDTEGIAYDIGSYRDAPPGLRIWCGATVEEEDLRALTPWLTWAYHTVK 154
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: UPI00036E7DBF (phosphoserine transaminase n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036E7DBF)

HSP 1 Score: 112 bits (280), Expect = 4.300e-28
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKSG 204
            VCLTLDLE DQVK +V LLE E VA+D+GSYRDAP GLRIWCG+TVE+ DV+ALMPW+EWAY + K+G
Sbjct:  311 VCLTLDLEADQVKQIVKLLEQEKVAYDIGSYRDAPPGLRIWCGSTVEESDVQALMPWIEWAYQKVKAG 378
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A7S3Y569_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y569_HETAK)

HSP 1 Score: 113 bits (283), Expect = 5.690e-28
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAK 198
            VCLTLDL  ++VK M+ LLE E VA D+G+YRDAPAGLRIWCGATVEKEDVEALMPWL+WAY E K
Sbjct:  437 VCLTLDLPPEKVKLMIALLEAENVALDIGAYRDAPAGLRIWCGATVEKEDVEALMPWLKWAYEEVK 502
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BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A7S3M7H8_9STRA (D-3-phosphoglycerate dehydrogenase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7H8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.560e-28
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKS 201
            VCLTLDL KDQVK  V LLETEGVA+D+GSYRDAP GLRIWCGATV++ED+EAL PWL+WAY   K+
Sbjct:  908 VCLTLDLNKDQVKKFVSLLETEGVAYDIGSYRDAPDGLRIWCGATVDQEDLEALTPWLKWAYETVKA 974
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Match: A0A0R2W7U9_9GAMM (Phosphoserine transaminase n=1 Tax=SAR92 bacterium BACL16 MAG-120619-bin48 TaxID=1655625 RepID=A0A0R2W7U9_9GAMM)

HSP 1 Score: 111 bits (277), Expect = 1.130e-27
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKEDVEALMPWLEWAYTEAKS 201
            VCLTLDL +DQVK +V LL+ E VAFD+G+YRDAPAGLRIWCGATVEK D+EAL+PWL+WAY E  +
Sbjct:  309 VCLTLDLNEDQVKQIVKLLDAEAVAFDIGAYRDAPAGLRIWCGATVEKSDLEALLPWLDWAYHEVSA 375
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86378.20080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK7_ECTSI3.030e-38100.00D-3-phosphoglycerate dehydrogenase n=2 Tax=Ectocar... [more]
A0A835YXH9_9STRA9.720e-3080.60D-3-phosphoglycerate dehydrogenase n=1 Tax=Tribone... [more]
A0A7S3M6G6_9STRA1.190e-2976.12Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7Y3E666_9GAMM1.030e-2877.27Phosphoserine transaminase n=1 Tax=Xanthomonadales... [more]
A0A352Q6G5_9GAMM1.720e-2870.15Phosphoserine aminotransferase (Fragment) n=1 Tax=... [more]
A0A7S1U0C8_9STRA2.560e-2871.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI00036E7DBF4.300e-2873.53phosphoserine transaminase n=1 Tax=Hahella ganghwe... [more]
A0A7S3Y569_HETAK5.690e-2877.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3M7H8_9STRA7.560e-2876.12D-3-phosphoglycerate dehydrogenase n=1 Tax=Spumell... [more]
A0A0R2W7U9_9GAMM1.130e-2773.13Phosphoserine transaminase n=1 Tax=SAR92 bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86378contigEcto-sp13_S_contig86378:1..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score143.3
Seed ortholog evalue4.3e-32
Seed eggNOG ortholog2880.D7FLK7
Preferred namePHGDH
Model size207
KEGG rclassRC00006,RC00031,RC00036
KEGG koko:K00058,ko:K00831
KEGG ReactionR01513,R04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004617,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006520,GO:0006541,GO:0006544,GO:0006563,GO:0006564,GO:0006566,GO:0006790,GO:0006805,GO:0006807,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008652,GO:0009055,GO:0009058,GO:0009064,GO:0009066,GO:0009069,GO:0009070,GO:0009410,GO:0009448,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010001,GO:0010468,GO:0016043,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0019222,GO:0019530,GO:0019694,GO:0019752,GO:0021510,GO:0021782,GO:0021915,GO:0022008,GO:0022402,GO:0022900,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032787,GO:0035295,GO:0042063,GO:0042133,GO:0042221,GO:0043009,GO:0043209,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051716,GO:0055114,GO:0060255,GO:0060322,GO:0060429,GO:0065007,GO:0065008,GO:0070314,GO:0070887,GO:0071466,GO:0071704,GO:0071840,GO:0120036,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons2
EggNOG free text desc.phosphoglycerate dehydrogenase activity
EggNOG OGsCOG0111@1,KOG0068@2759
EC1.1.1.399,1.1.1.95,2.6.1.52
Cds size207
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.4266217-CDS-Ecto-sp13_S_contig86378:0..331681464136.4266217-CDS-Ecto-sp13_S_contig86378:0..33Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86378 1..33 +
1681464136.4460692-CDS-Ecto-sp13_S_contig86378:351..5251681464136.4460692-CDS-Ecto-sp13_S_contig86378:351..525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86378 352..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86378.20080.1prot_Ecto-sp13_S_contig86378.20080.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86378 1..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86378.20080.1

>prot_Ecto-sp13_S_contig86378.20080.1 ID=prot_Ecto-sp13_S_contig86378.20080.1|Name=mRNA_Ecto-sp13_S_contig86378.20080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
VCLTLDLEKDQVKTMVGLLETEGVAFDVGSYRDAPAGLRIWCGATVEKED
VEALMPWLEWAYTEAKSG*
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mRNA from alignment at Ecto-sp13_S_contig86378:1..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86378.20080.1 ID=mRNA_Ecto-sp13_S_contig86378.20080.1|Name=mRNA_Ecto-sp13_S_contig86378.20080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86378:1..525+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGCCTCACGCTGGACCTCGAGAAGGACCAGGTACGTGCATCCCTAGC
CGCCGCCGCTACTGCTACTGCTGCTGTTGTTGTTGTTGTTGGTCGGGCTG
TTTCCGTCATCGTCATTATCATTTTCCTGTGTTTCTGGTGACCTCTACGT
TTTCCGTTATGGTCCAATCGCCCAGAAGAAAAGAGAAAGCCGCAGGGTGG
TCATCGTGATTCGACAACAACCAGGATGAAGAATAAGGTTCAAACTTTCC
GAAGCTGACATTATTGTGCTTGCATTGGTGCGGACTTGGAACTAAAAGTG
CCCCTCTCCATCCCCCTTCCCCTGGACACTGTATGCGTGTGGTGATCGCA
GGTGAAGACCATGGTGGGCCTCCTCGAGACGGAAGGAGTAGCGTTCGACG
TGGGCAGCTACAGAGACGCGCCAGCGGGGCTCCGCATATGGTGCGGCGCA
ACTGTCGAGAAGGAAGACGTCGAGGCGTTGATGCCGTGGCTCGAGTGGGC
TTACACGGAGGCAAAGAGCGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86378:1..525+

>mRNA_Ecto-sp13_S_contig86378.20080.1 ID=mRNA_Ecto-sp13_S_contig86378.20080.1|Name=mRNA_Ecto-sp13_S_contig86378.20080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86378:1..525+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGCCTCACGCTGGACCTCGAGAAGGACCAGGTGAAGACCATGGTGGG
CCTCCTCGAGACGGAAGGAGTAGCGTTCGACGTGGGCAGCTACAGAGACG
CGCCAGCGGGGCTCCGCATATGGTGCGGCGCAACTGTCGAGAAGGAAGAC
GTCGAGGCGTTGATGCCGTGGCTCGAGTGGGCTTACACGGAGGCAAAGAG
CGGCTGA
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