mRNA_Ecto-sp13_S_contig86364.20078.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86364.20078.1
Unique NamemRNA_Ecto-sp13_S_contig86364.20078.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86364.20078.1 vs. uniprot
Match: A0A6H5KER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER7_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 3.790e-80
Identity = 126/140 (90.00%), Postives = 130/140 (92.86%), Query Frame = 1 
Query:    1 MMNLRQQRCSRRPAACCLILALQGLQGQSFLAPSCFLNTQRTSFTQAAGHQQTPSRAAAARTVSSLNSTPFLAASQEQAKPPGQWSPVRSGGKVPDQNDHDDDEFNVNVGRAMDYLAADVALMFCTAPRLEIFTPDVRLK 420
            MMN RQQRCSRRPAACCLI+ALQGLQGQSF+APSCFLN QR SFTQAAG QQT SRAAAAR VSSLNS PFLAASQEQAKPPGQWSPVR GGKVPDQND+DD EFN+NVGRAMDYLAADVALMF TAPRLEIFTPDVRLK
Sbjct:    1 MMNSRQQRCSRRPAACCLIVALQGLQGQSFVAPSCFLNAQRASFTQAAGQQQTTSRAAAARPVSSLNSVPFLAASQEQAKPPGQWSPVRPGGKVPDQNDNDDHEFNINVGRAMDYLAADVALMFSTAPRLEIFTPDVRLK 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86364.20078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KER7_9PHAE3.790e-8090.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86364contigEcto-sp13_S_contig86364:53..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-05_003630.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.2961125-CDS-Ecto-sp13_S_contig86364:52..4721681464136.2961125-CDS-Ecto-sp13_S_contig86364:52..472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86364 53..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86364.20078.1prot_Ecto-sp13_S_contig86364.20078.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86364 53..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86364.20078.1

>prot_Ecto-sp13_S_contig86364.20078.1 ID=prot_Ecto-sp13_S_contig86364.20078.1|Name=mRNA_Ecto-sp13_S_contig86364.20078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MMNLRQQRCSRRPAACCLILALQGLQGQSFLAPSCFLNTQRTSFTQAAGH
QQTPSRAAAARTVSSLNSTPFLAASQEQAKPPGQWSPVRSGGKVPDQNDH
DDDEFNVNVGRAMDYLAADVALMFCTAPRLEIFTPDVRLK
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mRNA from alignment at Ecto-sp13_S_contig86364:53..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86364.20078.1 ID=mRNA_Ecto-sp13_S_contig86364.20078.1|Name=mRNA_Ecto-sp13_S_contig86364.20078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86364:53..472+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAACTTGCGGCAACAACGCTGCAGCAGACGGCCTGCTGCTTGCTG
TTTGATTCTTGCCTTGCAGGGGCTGCAGGGGCAATCGTTTCTTGCGCCAT
CATGTTTCCTCAACACGCAGCGGACGAGCTTCACCCAGGCAGCAGGGCAC
CAACAAACACCATCACGTGCGGCAGCAGCGCGAACTGTTTCGTCTCTCAA
CTCCACGCCATTTTTGGCCGCGTCGCAGGAGCAGGCAAAGCCTCCTGGAC
AATGGTCACCCGTACGATCTGGTGGCAAAGTTCCTGACCAAAATGATCAC
GACGATGATGAGTTCAACGTCAACGTCGGGCGCGCAATGGACTACCTTGC
TGCTGATGTTGCGCTGATGTTTTGCACGGCGCCCAGGCTCGAGATTTTTA
CTCCTGACGTCCGCCTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86364:53..472+

>mRNA_Ecto-sp13_S_contig86364.20078.1 ID=mRNA_Ecto-sp13_S_contig86364.20078.1|Name=mRNA_Ecto-sp13_S_contig86364.20078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86364:53..472+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAACTTGCGGCAACAACGCTGCAGCAGACGGCCTGCTGCTTGCTG
TTTGATTCTTGCCTTGCAGGGGCTGCAGGGGCAATCGTTTCTTGCGCCAT
CATGTTTCCTCAACACGCAGCGGACGAGCTTCACCCAGGCAGCAGGGCAC
CAACAAACACCATCACGTGCGGCAGCAGCGCGAACTGTTTCGTCTCTCAA
CTCCACGCCATTTTTGGCCGCGTCGCAGGAGCAGGCAAAGCCTCCTGGAC
AATGGTCACCCGTACGATCTGGTGGCAAAGTTCCTGACCAAAATGATCAC
GACGATGATGAGTTCAACGTCAACGTCGGGCGCGCAATGGACTACCTTGC
TGCTGATGTTGCGCTGATGTTTTGCACGGCGCCCAGGCTCGAGATTTTTA
CTCCTGACGTCCGCCTGAAG
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