mRNA_Ecto-sp13_S_contig8634.20075.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8634.20075.1
Unique NamemRNA_Ecto-sp13_S_contig8634.20075.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8634.20075.1 vs. uniprot
Match: D7FQN3_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN3_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.920e-46
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 2 
Query:  305 MGGERQRHNVRAINRTEGHCEYASISGGGSPDDCDEHGHAVNPIVDETHNYGWTDYRSISWWKFPARPLLKPSARAKMTIGTLHVKVVEARGLMSRDFAGKSDPFAELELTGRY 646
            MG  +  H+  A+N   G  EYA I+GG + D CDE G+AVNPIVDE  NYGW DYRSIS WKFPA PLL+PS RAKMTIGTLH KVVEARGL+SRDFAG+SDPFAELELTGRY
Sbjct:    1 MGHVQPGHDGTAMNHAGGQHEYACIAGGENHDGCDERGNAVNPIVDEADNYGWMDYRSISGWKFPAWPLLQPSTRAKMTIGTLHAKVVEARGLISRDFAGRSDPFAELELTGRY 114
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BLAST of mRNA_Ecto-sp13_S_contig8634.20075.1 vs. uniprot
Match: D7G4V0_ECTSI (Protein kinase C, beta 1, like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 6.890e-15
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:  455 YGWTDYRSISWWKFPARPLLKPSARAKMTIGTLHVKVVEARGLMSRD-FAGKSDPFAELELTGRY 646
            YG  DYRSI+ W FPAR LLK   +A ++IG LHVKVVEARGLM+RD   GKSDP+  L LTGRY
Sbjct:   38 YGVKDYRSINPWMFPARVLLKAKRKATISIGVLHVKVVEARGLMARDGMLGKSDPYVNLALTGRY 102
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BLAST of mRNA_Ecto-sp13_S_contig8634.20075.1 vs. uniprot
Match: A0A6H5JW30_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW30_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.630e-15
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 2 
Query:  407 DEHGHA-VNPIVDETHNYGWTDYRSISWWKFPARPLLKPSARAKMTIGTLHVKVVEARGLMSRD-FAGKSDPFAELELTGRY 646
            D HG +  + + +E   YG  DYRSI  W FPAR LLK   +A ++IG LHVKVVEARGLM+RD   GKSDP+  L LTGRY
Sbjct:   23 DTHGRSNADELYEE--RYGVKDYRSIKPWMFPARVLLKAKRKATISIGVLHVKVVEARGLMARDGMLGKSDPYVNLALTGRY 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8634.20075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQN3_ECTSI1.920e-4671.93C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
D7G4V0_ECTSI6.890e-1566.15Protein kinase C, beta 1, like n=1 Tax=Ectocarpus ... [more]
A0A6H5JW30_9PHAE8.630e-1557.32C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8634contigEcto-sp13_S_contig8634:366..4218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score166.0
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D7FQN3
Model size883
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1030@1,KOG1030@2759
Cds size546
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8634.20075.1prot_Ecto-sp13_S_contig8634.20075.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8634 453..1738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.1346385-UTR-Ecto-sp13_S_contig8634:365..4521681464136.1346385-UTR-Ecto-sp13_S_contig8634:365..452Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8634 366..452 -
1681464136.188806-UTR-Ecto-sp13_S_contig8634:1738..17601681464136.188806-UTR-Ecto-sp13_S_contig8634:1738..1760Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8634 1739..1760 -
1681464136.1984594-UTR-Ecto-sp13_S_contig8634:3990..42181681464136.1984594-UTR-Ecto-sp13_S_contig8634:3990..4218Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8634 3991..4218 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.1465662-CDS-Ecto-sp13_S_contig8634:452..7011681464136.1465662-CDS-Ecto-sp13_S_contig8634:452..701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8634 453..701 -
1681464136.1575718-CDS-Ecto-sp13_S_contig8634:1081..13191681464136.1575718-CDS-Ecto-sp13_S_contig8634:1081..1319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8634 1082..1319 -
1681464136.170461-CDS-Ecto-sp13_S_contig8634:1679..17381681464136.170461-CDS-Ecto-sp13_S_contig8634:1679..1738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8634 1680..1738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8634.20075.1

>prot_Ecto-sp13_S_contig8634.20075.1 ID=prot_Ecto-sp13_S_contig8634.20075.1|Name=mRNA_Ecto-sp13_S_contig8634.20075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MFCGQEQRKSRMAHVGSFMGGERQRHNVRAINRTEGHCEYASISGGGSPD
DCDEHGHAVNPIVDETHNYGWTDYRSISWWKFPARPLLKPSARAKMTIGT
LHVKVVEARGLMSRDFAGKSDPFAELELTGRYDGLPLCSFPAQGYAQLLV
MPLIEGLLIAWSCKSVMYGTKVHECVVSSKL*
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mRNA from alignment at Ecto-sp13_S_contig8634:366..4218-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8634.20075.1 ID=mRNA_Ecto-sp13_S_contig8634.20075.1|Name=mRNA_Ecto-sp13_S_contig8634.20075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8634:366..4218- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGGAAAAATAGATTGTAGACATGTACTGCTGTATTGCTGAATTGCCC
GCAGACGGAACCCGTGGAGGAACATTTTTCACAACTAACGACTGACGACT
TGGACTTACCATTTTGGTTTCCAAACAACAATCAACCGGCAGCACCCCAC
CCCACCGGCAAAGTGGAGCTAACAGCCGACAACAGAAGCACCAGACAGCT
TCCCCAGCCACATTTGGGGAGATAGCAGGTGGGCGTATCTGTCTCTGCGC
GTGTGTGGTATACGCAACAATTTTGCGAGTGCACATTGTGGGCGACGTCA
GCACACGACTGCTGTGTGAGCTTTGCCTGCCTCTGCAGCATATGTAGCCG
ACGGGTTCCCTGCGTATGGTATTTAGTAAGTTCCGCTGTTCCATTGATTT
ATCTCTCTTCTTTCTTTGTATGTATGACCGCGCGTTTCTCGCGCACACAA
AGACATCTATCTGCTGTATCATGTAATTGGGAACCTTTTCAATTGTTCAG
GTGGGTCCCTTGCGCGGCATTCTTTCTCTCATGAGAAGTTTTTCGTTTCA
AAAGACATGCCTCGGTGCCATCGACAAAAGCGTACTTTGTTGTAAGGTTT
GGGGCATACGAAGTACGGTAAAGTGCGTGTCGTGGGGGGTATCGAGGGGG
TGTGATAACCAGAGGGGGGTTTGACAGCGGGGTTTTGTAAACTGCCTTCG
ATTGGCTGCTGTTGTAGTGTGCAAGCTGCGATTCAGGGGGGGGGAAAGCG
GCGGGTTGTGATATCACTGCCCGATGTTCGCATCTGGGTGTAGAATGGGG
GATACTGCCTTTGCTGCTTTCAACAAATATTGCTGCAGTCCTGCAGGAGG
AGACACCCTGAAAACGAAGAGGGGGCGGCAATTAAAAGGGGAAGATGATG
GTAAGTCTCGCATGAACCCGCGGGTCGTACGATCAATCTTTTCGTTGAAA
AGAAGTAAACAACAACACCACAAACTTGGTCGAGGGGGTAGCCTCGTAAA
CCCTCTAGCAGCAAGTCGTGAGTTCACATGCCTGTGTGGGTGAAAACTTT
GCAACTTGCCAGTAGAAAGCGAAAAAAGCTGAAAAGCTCGTTCGTAAACA
ATATTCGACTTCACCGTTCACGAGGGAAAGCATTACTGGAGATGGAAAGG
GACACCTGTACCCTGCTCGCGTTGAGAATAGCAGACACGCACCGCAGGAG
GAAGGCGGGGCAAAGAATAAAAATAAAAATAAAAAGGCTTGTTTACCCCC
TCCCTTGTGACCCCGGCTGGTTGTAGTGTACACCAGAAATGTACTGAAAA
GTGTAGCAGTCACACCGCACGAACAAGGTGTGCGGTCGCCAGAATAGATG
GGACGAAAAAATATTCCGCGATCGGGGGGGATCGGGAAGTTTCCTTCGCA
ACATTACAACATCAGCACAAACGATGAAAAACAGACGCACCATCAGCACC
GACATATCTACGAAATCCAAGATTCCAGATACCGTTTTATGAAGGCTGAA
AAACCGACCGCCTTCCAAGCCTGTAAATAATGCCGCTGCTATACTATGTA
CTCCGGAGTATGTTTAATTGTTAACTGCAAACCTATTTCGTACCCCCGCG
CGCAGCATCAGACTATACGACTTTAGCAGAGGTCTGAATTATTCATACCA
TATGAGTGGTTTTGCCTCTCGCCGCTGCGATGCTGCTGTAGATACCAAGT
ACACGCGCTATTGAGCACAGAAGATTGACAGCGAGCGGTTAGTTCTGAAA
ATCATCATCTCACAGAATTAACTGCTGGAAGAACCGTGACCGCTTGTGAC
ATCCTCCGCTTTCCACTGCTGCTGCAGTGCCCCAGCCTTTCTCGTCTTAA
CATGCATCCGTCCTTTAAAACGAAAGCTCTCCACACTATTACTACTGTGA
TTTGCGCCCAAGACAGTAGAATCCATCACATTCCTGTTCTGTTATTTGGG
TCACCCGCCACATATCTGAGGAAGGGGATCTTGCACCTCTATAGGTTTGA
CGGTTATCCTGAGAATATCCGTACACATTGGTCTTGTACTGATTTCTATA
TAGGTTGTAAGGACACCAACAACAAAATCTAAGCCCCTCTGCACATTGCT
CGTGGGGCTGACTCTGACCCTTCCCTCCGACCTTTCTTTTTCACGACAAA
CGACGGTGCCGACCCTCACGGCCCATCATGTCGCTCTGCCTTCCTTGTCC
AAGTAGCGAGACCGACCTTTTTCGTGATGGTGGTGAAGCTCACCGTTCAC
GATCGAGAATCAGTTGGAGGCGTTCGTCCACCCCTCCTAACCGCGCGCCC
CCGGTTCAGCACACCCCGCACATTTGTGCAGTTACCCAGGGCACTCCTTG
TAAAAAAAAACGAAGGTTCGGAATGAAGAATCGGGTAGTCACTAAATTGC
ACTCTAAACTGATGATGATGCATGACCCGTCGCTGCTGCCGTCGCCTTGT
GCCAGAAGCGCCCCAGCTCTGTGGGTCTTCATGTTCTGCGGACAGGAACA
AAGAAAAAGTCGTATGGCACACGTCGGATCTTTCATGGGGTGCGTGAGTG
CATTATTGTCAACCGCGGCGTCGTGCCCGGAGTTCTATTTTGGAAATTGA
GGATTAGAGGAATAGAGAAAAAGAGAAAAAGAGAAAGAATGGCGTTTTTG
ACGCGCGACGAACGGACGTTGCGTAATCAGTGTTGAGTGCGGGTGATGAC
GAATTACACCGAAAACCAATGCGGTCGATTCGAAGGCTTCCCGTCGACCC
CCCCGCCCCCTCAACAAACCTACAAATGAATTGTACCAGAGGGAAACGTA
TCTGTGGTTTTATACTATCGTCTTCTGCCACCCCATCCGGCGTACCTCAC
ACTTATCCCCCGCCCCTCCCCCCTACACCGAACCGCGATCGCTCCAAAGG
GGGGAGCGTCAACGTCACAACGTGAGGGCGATCAACCGCACGGAGGGGCA
CTGCGAATACGCTTCTATCTCTGGAGGTGGGAGCCCTGACGATTGTGACG
AGCACGGCCATGCCGTGAACCCTATCGTCGACGAAACCCACAACTATGGC
TGGACGGACTACCGCTCCATCAGCTGGTGGAAGTTCCCTGCTCGGCCTCT
ACTCAAGCCCTCTGCCAGGGCCAAGATGACCATCGGGGTAAGTATGCTGT
TGATGAACAACCAAAGTCAGGAAATGAGCTCACTCTGTCGCTTAACTTTT
ATTCCTGCATGTGTTCAAGGAAATCCTCTCAATCCGAACAGGTTGCGTTT
GGTGATCGCGTGGACGCGATAGAATAGTTAGATGCCAGTCATGCTCGCAC
TCCCCATAGAGAGTGATAAAATGTTCAAGTAAGACGGGAACTGGAATTCC
TAGGCGTTTGGTTTTCACCATTTCACAAGACAGGACAAACAACGTGGGGC
ACTTCCTCATGTACAACACGAGAGGGATGCTTTTCAACAAGAAAAAAAGA
TACGTTTTGTATCTTTTCTTCTAGCTTGCCTAACAACTACCCACCACGCA
AACACTCGTACATGCAGACGCTGCACGTGAAAGTAGTGGAAGCGAGAGGC
CTCATGTCGAGAGACTTTGCGGGGAAGAGCGACCCGTTTGCGGAGCTGGA
GCTTACCGGCAGGTACGATGGTCTACCTCTGTGTTCCTTCCCAGCTCAAG
GCTACGCACAATTACTCGTCATGCCGCTCATAGAAGGATTGTTGATTGCA
TGGAGCTGTAAATCTGTCATGTACGGCACGAAAGTTCATGAATGTGTGGT
ATCCTCTAAGCTTTGAGACCTCGATTGAAGCGTCGTCACGCCTTTCACAA
TATTTGCGGATATCTGGATGGTCGAGGCGCCGTACAGGAACTGTACTTCT
TCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8634:366..4218-

>mRNA_Ecto-sp13_S_contig8634.20075.1 ID=mRNA_Ecto-sp13_S_contig8634.20075.1|Name=mRNA_Ecto-sp13_S_contig8634.20075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8634:366..4218- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTGCGGACAGGAACAAAGAAAAAGTCGTATGGCACACGTCGGATC
TTTCATGGGGGGGGAGCGTCAACGTCACAACGTGAGGGCGATCAACCGCA
CGGAGGGGCACTGCGAATACGCTTCTATCTCTGGAGGTGGGAGCCCTGAC
GATTGTGACGAGCACGGCCATGCCGTGAACCCTATCGTCGACGAAACCCA
CAACTATGGCTGGACGGACTACCGCTCCATCAGCTGGTGGAAGTTCCCTG
CTCGGCCTCTACTCAAGCCCTCTGCCAGGGCCAAGATGACCATCGGGACG
CTGCACGTGAAAGTAGTGGAAGCGAGAGGCCTCATGTCGAGAGACTTTGC
GGGGAAGAGCGACCCGTTTGCGGAGCTGGAGCTTACCGGCAGGTACGATG
GTCTACCTCTGTGTTCCTTCCCAGCTCAAGGCTACGCACAATTACTCGTC
ATGCCGCTCATAGAAGGATTGTTGATTGCATGGAGCTGTAAATCTGTCAT
GTACGGCACGAAAGTTCATGAATGTGTGGTATCCTCTAAGCTTTGA
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