mRNA_Ecto-sp13_S_contig8625.20062.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8625.20062.1
Unique NamemRNA_Ecto-sp13_S_contig8625.20062.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8625.20062.1 vs. uniprot
Match: D7FMQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ3_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 1.250e-153
Identity = 231/274 (84.31%), Postives = 239/274 (87.23%), Query Frame = 1 
Query:    1 QELASRGMRRRMELPQRPGAKEPRQGGTGGKGDGEKDFVDCQDFVKRGACCSFNKRGRCSNHHPLDAHVVEIPKPRCPQCTIRLPCGHCDYDQSRRSLNTFCVAAGARIQKRTGRLHRLLKTGXXXXXXXXQPGSATKSTVEASGDAGGHEGGQGRXXXXXXXXXXX-TVAANKNPSATKSAKQQQRSTFESRASKANSRGVEAVLAKLGEIGRDLEAQRAWTTDTRTPGGGMHEFRASIFDKKLERLFRRCEEAHEEADAVSEAYSLLLENVR 819
            QELASRGMRRRMELPQR G +E  Q G GGKGDGEKDFVDCQDFV RGAC SFN+RGRCSNHHPLDAHVVE+PKPRCPQCTIRLPCGHCDYDQSRRSL+TFC AAGARIQKR GRLHRLLKTG        QPGS TKSTV+ASGDAGGHEG QGR            TVAANKNPSATKSAKQQQRSTFESRASKAN RGVEAVL+KLGEIGRDLEAQRAWTTDTRTPGGGMHEFRAS+FDKKLERLFRRCEEA+EEADA SEAY LLLENVR
Sbjct:  241 QELASRGMRRRMELPQRRGPQESTQEGKGGKGDGEKDFVDCQDFVMRGACRSFNERGRCSNHHPLDAHVVEVPKPRCPQCTIRLPCGHCDYDQSRRSLHTFCEAAGARIQKRIGRLHRLLKTGGGGGDNKQQPGSMTKSTVKASGDAGGHEGAQGRTNRTTDNTRDSPTVAANKNPSATKSAKQQQRSTFESRASKANRRGVEAVLSKLGEIGRDLEAQRAWTTDTRTPGGGMHEFRASVFDKKLERLFRRCEEANEEADAESEAYLLLLENVR 514
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BLAST of mRNA_Ecto-sp13_S_contig8625.20062.1 vs. uniprot
Match: F0XZM9_AURAN (AAA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZM9_AURAN)

HSP 1 Score: 84.7 bits (208), Expect = 8.460e-15
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:    1 QELASRGMRRRMELPQRPGAKEPRQGGTGGKGDGEKDFVDCQDFVKRGACCSFNKRGRCSNHHPLDAHVVEIPKPRCPQCTIRLPCGHCDYDQSRRSLNTFCV 309
            QELA+RG+ RR +LP+R                   D +DC +FVK G+C  FN+ G CS  HP   H V +P  RCPQCT+  PC HC +  SR  L   C 
Sbjct:  367 QELATRGLARRAQLPERD------------------DSIDCTNFVKCGSCRVFNEFGHCSLDHPSTLHCVVLPPHRCPQCTLVWPCQHCSFSGSRNRLIESCT 451
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8625.20062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMQ3_ECTSI1.250e-15384.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0XZM9_AURAN8.460e-1541.75AAA domain-containing protein n=1 Tax=Aureococcus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8625contigEcto-sp13_S_contig8625:4810..6553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score439.5
Seed ortholog evalue1.1e-120
Seed eggNOG ortholog2880.D7FMQ3
Model size822
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C4V1@1,2RY2V@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-23_001180.1
Cds size801
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.3097043-CDS-Ecto-sp13_S_contig8625:4809..53011681464135.3097043-CDS-Ecto-sp13_S_contig8625:4809..5301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8625 4810..5301 -
1681464135.3218572-CDS-Ecto-sp13_S_contig8625:5572..56651681464135.3218572-CDS-Ecto-sp13_S_contig8625:5572..5665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8625 5573..5665 -
1681464135.3322766-CDS-Ecto-sp13_S_contig8625:6316..65321681464135.3322766-CDS-Ecto-sp13_S_contig8625:6316..6532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8625 6317..6532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.343759-UTR-Ecto-sp13_S_contig8625:6532..65531681464135.343759-UTR-Ecto-sp13_S_contig8625:6532..6553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8625 6533..6553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8625.20062.1prot_Ecto-sp13_S_contig8625.20062.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8625 4810..6532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8625.20062.1

>prot_Ecto-sp13_S_contig8625.20062.1 ID=prot_Ecto-sp13_S_contig8625.20062.1|Name=mRNA_Ecto-sp13_S_contig8625.20062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MRRRMELPQRPGAKEPRQGGTGGKGDGEKDFVDCQDFVKRGACCSFNKRG
RCSNHHPLDAHVVEIPKPRCPQCTIRLPCGHCDYDQSRRSLNTFCVAAGA
RIQKRTGRLHRLLKTGGGGGDNNQQPGSATKSTVEASGDAGGHEGGQGRT
NRTADTPDSPTVAANKNPSATKSAKQQQRSTFESRASKANSRGVEAVLAK
LGEIGRDLEAQRAWTTDTRTPGGGMHEFRASIFDKKLERLFRRCEEAHEE
ADAVSEAYSLLLENVR*
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mRNA from alignment at Ecto-sp13_S_contig8625:4810..6553-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8625.20062.1 ID=mRNA_Ecto-sp13_S_contig8625.20062.1|Name=mRNA_Ecto-sp13_S_contig8625.20062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8625:4810..6553- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGCTGGCGAGCCGGGGCATGCGGAGAAGGATGGAGCTTCCCCAACG
ACCGGGGGCGAAGGAGCCGCGACAGGGAGGCACGGGGGGTAAGGGCGATG
GGGAGAAGGATTTCGTGGACTGTCAGGATTTCGTAAAGCGAGGGGCGTGT
TGTTCCTTCAACAAGCGGGGGCGCTGCAGCAACCATCACCCTCTGGATGC
GCACGTCGTAGAGATCCCGAAGCCGAGGTGCCCCCAGGTGAGGGATTTTC
GGCCCCGGCCTTCGCCATGCGTTTTGGTCTGGACTATAGCATCACTCCCT
ATCTCCGTTCTTGGGATATGGTAGTTGCCACGCTCGTTTATTGCAGGTCG
CACGTGAGCGTCTGCCATGCGCACTTGTTGGCAACGACTTTCTCACGTGC
GTGTAGCACGCTACTGCCTTGGGAGATTTTTTCACTGTGACCCGCCGGCG
CTTGGGCCCGTTCGGCCAGGCTGTACTTGTTAGTTGTCCTTCCCGTGGCT
GTGAGTGTGGACCAGACGGAGCTCTGTGTATTTGCAGTGGGGGCTTCTTT
CGCGCCACGCTTCATTTCGGACTCGACAGTTGTTGAGGGAGTTTTGCCTT
AGACGGACACAGTCGTGTTGCCGAAAACGAGATGGAAAATCATCGTCTTG
AGCTACCCCTCCCAGTTCTCCTGTCCACCCGAGCGACAAGGAAAAACGCC
GAAAAGCACAAAATCTCGACCACGACAGTTCATTTCGGCTGCTGTAACCT
TCTTCTAGCCATCTTTGAACAAGCTGCATTACATCAAACACACGTCGACG
GTTGTCCGAACCGCCCCCCCCCCCGTGCGCCACACATCTTGCGGCAAAAC
TTCTACGAACGCTCCCCGCTGTGTGCGGCCAACTATAGTGCACGATACGT
CTCCCGTGCGGCCACTGCGATTACGACCAGTCGAGGAGGAGCCTCAACAC
TTTCTGCGTAGCCGCAGGGGCTAGGATACAGGTACAGGCCTGTTGAGGAT
GTGGTCATGGTGTGGCGCAGGATGATTGCAATGTTGCACAAAGATAGCGT
GCATTGCTACCGTGTAGAAACTAGGTGCCACGAGGTTTCGTGGCCCATCC
AAATGCGGTTTCGATATTCGATAGTTCTACCTCCCGCCCTCCAAACCAGG
CAGCGATCCCTTCTTTCGGCTGTCCCGATACACTTCTGCCAAACACCAGC
TTGCATGCGCATGGTTTCGAACGTCCTTGGTCGCAACACAAACTCGCCAC
AGAAGCGCACAGGTCGACTACACCGGCTACTGAAGACTGGCGGCGGTGGT
GGGGATAACAACCAGCAGCCAGGATCGGCGACGAAGTCAACCGTCGAAGC
GAGCGGTGACGCCGGAGGGCACGAGGGGGGGCAGGGACGCACCAACAGAA
CCGCCGATACCCCTGATTCGCCCACCGTCGCTGCAAACAAGAACCCCAGC
GCGACCAAGAGCGCCAAGCAGCAGCAAAGGTCTACTTTCGAGAGCCGTGC
CAGCAAGGCCAACAGCCGCGGCGTAGAGGCCGTGTTGGCGAAGCTTGGCG
AGATCGGCAGGGATCTGGAGGCACAGCGAGCTTGGACCACAGACACAAGG
ACCCCCGGTGGAGGCATGCACGAGTTTCGGGCGTCGATTTTCGACAAAAA
GCTGGAAAGATTGTTCCGGCGGTGCGAAGAGGCCCACGAGGAGGCGGACG
CGGTGTCGGAGGCATACTCGCTTCTATTAGAAAACGTGCGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8625:4810..6553-

>mRNA_Ecto-sp13_S_contig8625.20062.1 ID=mRNA_Ecto-sp13_S_contig8625.20062.1|Name=mRNA_Ecto-sp13_S_contig8625.20062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8625:4810..6553- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGAAGGATGGAGCTTCCCCAACGACCGGGGGCGAAGGAGCCGCG
ACAGGGAGGCACGGGGGGTAAGGGCGATGGGGAGAAGGATTTCGTGGACT
GTCAGGATTTCGTAAAGCGAGGGGCGTGTTGTTCCTTCAACAAGCGGGGG
CGCTGCAGCAACCATCACCCTCTGGATGCGCACGTCGTAGAGATCCCGAA
GCCGAGGTGCCCCCAGTGCACGATACGTCTCCCGTGCGGCCACTGCGATT
ACGACCAGTCGAGGAGGAGCCTCAACACTTTCTGCGTAGCCGCAGGGGCT
AGGATACAGAAGCGCACAGGTCGACTACACCGGCTACTGAAGACTGGCGG
CGGTGGTGGGGATAACAACCAGCAGCCAGGATCGGCGACGAAGTCAACCG
TCGAAGCGAGCGGTGACGCCGGAGGGCACGAGGGGGGGCAGGGACGCACC
AACAGAACCGCCGATACCCCTGATTCGCCCACCGTCGCTGCAAACAAGAA
CCCCAGCGCGACCAAGAGCGCCAAGCAGCAGCAAAGGTCTACTTTCGAGA
GCCGTGCCAGCAAGGCCAACAGCCGCGGCGTAGAGGCCGTGTTGGCGAAG
CTTGGCGAGATCGGCAGGGATCTGGAGGCACAGCGAGCTTGGACCACAGA
CACAAGGACCCCCGGTGGAGGCATGCACGAGTTTCGGGCGTCGATTTTCG
ACAAAAAGCTGGAAAGATTGTTCCGGCGGTGCGAAGAGGCCCACGAGGAG
GCGGACGCGGTGTCGGAGGCATACTCGCTTCTATTAGAAAACGTGCGGTA
G
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