prot_Ecto-sp13_S_contig8625.20062.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8625.20062.1
Unique Nameprot_Ecto-sp13_S_contig8625.20062.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length267
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8625.20062.1 vs. uniprot
Match: D7FMQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ3_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 6.720e-149
Identity = 224/267 (83.90%), Postives = 232/267 (86.89%), Query Frame = 0 
Query:    1 MRRRMELPQRPGAKEPRQGGTGGKGDGEKDFVDCQDFVKRGACCSFNKRGRCSNHHPLDAHVVEIPKPRCPQCTIRLPCGHCDYDQSRRSLNTFCVAAGARIQKRTGRLHRLLKTGXXXXXXXXQPGSATKSTVEASGDAGGHEGGQGRXXXXXXXXXXX-TVAANKNPSATKSAKQQQRSTFESRASKANSRGVEAVLAKLGEIGRDLEAQRAWTTDTRTPGGGMHEFRASIFDKKLERLFRRCEEAHEEADAVSEAYSLLLENVR 266
            MRRRMELPQR G +E  Q G GGKGDGEKDFVDCQDFV RGAC SFN+RGRCSNHHPLDAHVVE+PKPRCPQCTIRLPCGHCDYDQSRRSL+TFC AAGARIQKR GRLHRLLKTG        QPGS TKSTV+ASGDAGGHEG QGR            TVAANKNPSATKSAKQQQRSTFESRASKAN RGVEAVL+KLGEIGRDLEAQRAWTTDTRTPGGGMHEFRAS+FDKKLERLFRRCEEA+EEADA SEAY LLLENVR
Sbjct:  248 MRRRMELPQRRGPQESTQEGKGGKGDGEKDFVDCQDFVMRGACRSFNERGRCSNHHPLDAHVVEVPKPRCPQCTIRLPCGHCDYDQSRRSLHTFCEAAGARIQKRIGRLHRLLKTGGGGGDNKQQPGSMTKSTVKASGDAGGHEGAQGRTNRTTDNTRDSPTVAANKNPSATKSAKQQQRSTFESRASKANRRGVEAVLSKLGEIGRDLEAQRAWTTDTRTPGGGMHEFRASVFDKKLERLFRRCEEANEEADAESEAYLLLLENVR 514
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8625.20062.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMQ3_ECTSI6.720e-14983.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 237..257
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 28..59
score: 8.568

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8625contigEcto-sp13_S_contig8625:4810..6532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8625.20062.1mRNA_Ecto-sp13_S_contig8625.20062.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8625 4810..6553 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8625.20062.1 ID=prot_Ecto-sp13_S_contig8625.20062.1|Name=mRNA_Ecto-sp13_S_contig8625.20062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MRRRMELPQRPGAKEPRQGGTGGKGDGEKDFVDCQDFVKRGACCSFNKRG
RCSNHHPLDAHVVEIPKPRCPQCTIRLPCGHCDYDQSRRSLNTFCVAAGA
RIQKRTGRLHRLLKTGGGGGDNNQQPGSATKSTVEASGDAGGHEGGQGRT
NRTADTPDSPTVAANKNPSATKSAKQQQRSTFESRASKANSRGVEAVLAK
LGEIGRDLEAQRAWTTDTRTPGGGMHEFRASIFDKKLERLFRRCEEAHEE
ADAVSEAYSLLLENVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH