mRNA_Ecto-sp13_S_contig12417.2006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12417.2006.1
Unique NamemRNA_Ecto-sp13_S_contig12417.2006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.340e-79
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 1
Query:   16 RTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLATHSDVPTDTTW 471
            RTRCLDAFV+ALSQACEGG+KRWYASTLELQLTSLDLCRACR+TSILHV VDDQTPR+LW+SRTAQTRPNTRSW L ISSRVPV+RALRLTWALSME LLR AAIELW WS+RLEL GSSC SSLGSEVVWPRGLT+LVL T SD+   T W
Sbjct:    8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDIAMGTVW 159          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.720e-56
Identity = 98/150 (65.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:   13 GRTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLATHSDVPTD 462
            G TR  DAF +ALSQACEGG+KRWY ST ELQL SLD+CRACRST  LHVRV   TP +LW+  T Q  PNT+S K+R+ SRVPV+RALRLTWA SME L++ AAIELW+ S+RLE+ G  CA+SLGS VVWP GLT+LVL T   +P +
Sbjct:    5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGS-VVWPLGLTQLVLDTDFHIPME 153          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 4.900e-32
Identity = 75/151 (49.67%), Postives = 97/151 (64.24%), Query Frame = 1
Query:   13 GRTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLATHSDVPTDT 465
            GR+ CL AF+VAL+Q C G +KRWYASTLELQL SL+ C ACR    LHVRVD QTPR+LW+   +      RS +  +S+RVP ++A  LTWAL ME LL+ +A+EL + S+   + G+S  +SLGS       L  LV    SD+P  T
Sbjct:   13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVF--DSDMPAST 161          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.020e-31
Identity = 73/148 (49.32%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   28 LDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLATHSDVPTDTTW 471
            LD  +VAL+QAC+G +KRWY STLELQL SL+LC ACRS  +LHV V + TP  LW+SRT++T P+ RS ++  S+RVP ++AL  TWAL M+ L + AA E    ++R    G S A+S+ S VVWP  L  LV +    +P    W
Sbjct:   90 LDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVES-VVWPESLKRLVFSRR--MPGKAVW 234          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.410e-31
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1
Query:   22 RCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVL 435
            RCLDAFVVALSQ  EGG+KRWY STL+LQL SL+ C ACRST +LHV VD +TP  LW+   A     T       S+RVP ++A+ LTWA   E  L +A+ ELW   + L+LQ S C ++L S VVWP+GL  LV+
Sbjct:    8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGT-------STRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDS-VVWPQGLQRLVM 137          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.470e-30
Identity = 76/149 (51.01%), Postives = 95/149 (63.76%), Query Frame = 1
Query:   13 GRTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLATHSDVPT 459
            G ++CLDAFVVAL+QAC+G +KRWY STLELQL SL++C ACR    LHVRV  QTP +LW      T  N RS K+ ISSRVPV++A  LTWAL M  L + +A E+ + S        S A+SL S  VWP+ L  +V  +   V T
Sbjct:    5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLES-AVWPQRLKRMVFESDMTVNT 152          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.150e-28
Identity = 77/171 (45.03%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   13 GRTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRS----------------------------WKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLAT 441
            G +R  DA ++A+SQA EG  KRWY STLEL+L SL+ CRACR    +HVRVD  TP +LW+     TR +TRS                             K RISSRVPV +AL LTWAL  E LL+  A+ELW   + L+L+ S   S L S V WP+ L  L L T
Sbjct:    5 GASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVS-VAWPQNLKRLALET 174          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.330e-27
Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    7 VIGRTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVM 270
            ++G T+C DAFVVALSQACEGG KR Y STLEL L SLD+CRA RSTS LHVRV  QTPR+ W+    Q RP+  S K+R+SSRVPV+
Sbjct:   16 LLGPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFWSPPKVQLRPDEGSSKIRLSSRVPVV 103          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.160e-23
Identity = 67/148 (45.27%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   10 IGRTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALSMEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLATHSDV 453
            +GR+ CLDAF+VAL QA +G  KRWY STLELQL SL+ C ACRS     V++  QTP +LW+ R +      RS +  I SRVP ++A    WAL ME LL  +A EL   S+  +  G S A+S G  + W + LT L+  +   V
Sbjct:   24 LGRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPG-RMGWFQKLTRLMFYSERSV 170          
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.750e-21
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   16 RTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTSILHVRVDDQTPRNLWTSRTAQTRPNTRSWKL 243
            R++CLDAFVVAL+Q C+G +KRWYASTLELQL SL+ C ACR    LHVRVD +TPR+LW+ RT     + RS K+
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12417.2006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5LIJ3_9PHAE3.340e-7984.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F9_ECTSI1.720e-5665.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLV1_9PHAE4.900e-3249.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK8_ECTSI1.020e-3149.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V9_9PHAE1.410e-3153.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE4.470e-3051.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX4_9PHAE6.150e-2845.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVM8_9PHAE4.330e-2765.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K9_9PHAE2.160e-2345.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI2.750e-2161.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12417contigEcto-sp13_S_contig12417:3992..5062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1071
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_007330.1
Cds size1071
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.9764216-CDS-Ecto-sp13_S_contig12417:3991..50621681462660.9764216-CDS-Ecto-sp13_S_contig12417:3991..5062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12417 3992..5062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12417.2006.1prot_Ecto-sp13_S_contig12417.2006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12417 3992..5062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12417.2006.1

>prot_Ecto-sp13_S_contig12417.2006.1 ID=prot_Ecto-sp13_S_contig12417.2006.1|Name=mRNA_Ecto-sp13_S_contig12417.2006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp
VAVIGRTRCLDAFVVALSQACEGGKKRWYASTLELQLTSLDLCRACRSTS
ILHVRVDDQTPRNLWTSRTAQTRPNTRSWKLRISSRVPVMRALRLTWALS
MEDLLRNAAIELWAWSQRLELQGSSCASSLGSEVVWPRGLTELVLATHSD
VPTDTTWWPVRLQYLALWGSFNQPISEVVWPVSLQQLSFGDEFNQPIAGI
VWPSSLQQLSFGHYFIQSISEVVWPVSLRQLSFGFEFNQPIAGVVWPSSL
QQLSFGHFFSQPIAGVVWPSSLQQLSFGHDFDQPIAGVVWPSALRQLSFR
DKFDQSIAGVVWPSSLQQLSFGYHFSQPIAGVVWPSSLQQLSFGRDFDQP
IAGVVWP
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mRNA from alignment at Ecto-sp13_S_contig12417:3992..5062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12417.2006.1 ID=mRNA_Ecto-sp13_S_contig12417.2006.1|Name=mRNA_Ecto-sp13_S_contig12417.2006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12417:3992..5062+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCTGTAATAGGGCGTACCCGATGCCTCGATGCCTTCGTCGTCGCCTT GAGTCAAGCGTGCGAGGGAGGGAAGAAGCGCTGGTATGCGTCGACACTGG AGCTGCAGCTGACCTCGCTGGACCTGTGCAGGGCGTGCCGAAGTACGTCG ATCTTGCACGTGCGTGTAGATGATCAGACTCCTCGAAACCTGTGGACTTC TCGGACAGCACAGACCCGGCCGAACACGCGTAGCTGGAAGCTCCGCATCT CGAGCCGCGTACCGGTCATGCGGGCTCTTCGTTTGACATGGGCTCTGTCA ATGGAAGATCTGCTGAGGAATGCCGCCATCGAGCTGTGGGCATGGTCACA ACGTCTTGAGCTGCAGGGGTCGTCGTGTGCGTCTAGCCTGGGATCAGAAG TGGTTTGGCCCCGAGGGCTTACAGAGCTGGTGTTGGCAACGCACTCGGAT GTTCCAACAGACACCACGTGGTGGCCGGTGCGCCTGCAATATCTGGCACT TTGGGGTAGTTTCAACCAGCCTATTTCGGAAGTCGTGTGGCCGGTGTCCC TGCAACAGCTATCGTTTGGGGACGAGTTCAATCAGCCTATTGCCGGAATC GTGTGGCCATCCTCCCTGCAGCAGCTATCGTTCGGGCACTACTTCATTCA GTCTATTTCGGAAGTCGTGTGGCCGGTGTCCCTGCGGCAGCTATCGTTCG GGTTCGAGTTCAATCAGCCTATTGCCGGAGTCGTGTGGCCGTCCTCCCTG CAGCAGCTTTCGTTCGGGCACTTTTTCAGTCAGCCTATTGCCGGAGTCGT GTGGCCGTCCTCCCTGCAGCAGCTATCGTTCGGGCACGACTTCGATCAGC CTATTGCCGGAGTCGTGTGGCCGTCCGCCCTGCGACAGCTATCGTTCAGG GACAAATTCGATCAGTCAATTGCCGGAGTCGTGTGGCCGTCCTCCCTGCA GCAGCTATCGTTCGGGTACCACTTCAGTCAGCCTATTGCCGGAGTGGTCT GGCCGTCCTCCCTGCAGCAGCTATCGTTCGGGAGGGACTTCGATCAGCCT ATCGCCGGAGTCGTGTGGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12417:3992..5062+

>mRNA_Ecto-sp13_S_contig12417.2006.1 ID=mRNA_Ecto-sp13_S_contig12417.2006.1|Name=mRNA_Ecto-sp13_S_contig12417.2006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12417:3992..5062+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCTGTAATAGGGCGTACCCGATGCCTCGATGCCTTCGTCGTCGCCTT
GAGTCAAGCGTGCGAGGGAGGGAAGAAGCGCTGGTATGCGTCGACACTGG
AGCTGCAGCTGACCTCGCTGGACCTGTGCAGGGCGTGCCGAAGTACGTCG
ATCTTGCACGTGCGTGTAGATGATCAGACTCCTCGAAACCTGTGGACTTC
TCGGACAGCACAGACCCGGCCGAACACGCGTAGCTGGAAGCTCCGCATCT
CGAGCCGCGTACCGGTCATGCGGGCTCTTCGTTTGACATGGGCTCTGTCA
ATGGAAGATCTGCTGAGGAATGCCGCCATCGAGCTGTGGGCATGGTCACA
ACGTCTTGAGCTGCAGGGGTCGTCGTGTGCGTCTAGCCTGGGATCAGAAG
TGGTTTGGCCCCGAGGGCTTACAGAGCTGGTGTTGGCAACGCACTCGGAT
GTTCCAACAGACACCACGTGGTGGCCGGTGCGCCTGCAATATCTGGCACT
TTGGGGTAGTTTCAACCAGCCTATTTCGGAAGTCGTGTGGCCGGTGTCCC
TGCAACAGCTATCGTTTGGGGACGAGTTCAATCAGCCTATTGCCGGAATC
GTGTGGCCATCCTCCCTGCAGCAGCTATCGTTCGGGCACTACTTCATTCA
GTCTATTTCGGAAGTCGTGTGGCCGGTGTCCCTGCGGCAGCTATCGTTCG
GGTTCGAGTTCAATCAGCCTATTGCCGGAGTCGTGTGGCCGTCCTCCCTG
CAGCAGCTTTCGTTCGGGCACTTTTTCAGTCAGCCTATTGCCGGAGTCGT
GTGGCCGTCCTCCCTGCAGCAGCTATCGTTCGGGCACGACTTCGATCAGC
CTATTGCCGGAGTCGTGTGGCCGTCCGCCCTGCGACAGCTATCGTTCAGG
GACAAATTCGATCAGTCAATTGCCGGAGTCGTGTGGCCGTCCTCCCTGCA
GCAGCTATCGTTCGGGTACCACTTCAGTCAGCCTATTGCCGGAGTGGTCT
GGCCGTCCTCCCTGCAGCAGCTATCGTTCGGGAGGGACTTCGATCAGCCT
ATCGCCGGAGTCGTGTGGCCG
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