mRNA_Ecto-sp13_S_contig86233.20059.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86233.20059.1
Unique NamemRNA_Ecto-sp13_S_contig86233.20059.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A6H5JNH2_9PHAE (Sulf_transp domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNH2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 7.050e-22
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    7 AGLDQAGAPTLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            AGLDQ GAP LS + +AVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL
Sbjct:   71 AGLDQTGAPALSLLRFAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 124          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A1A7BJR9_9SPHN (Putative transporter component n=1 Tax=Erythrobacter dokdonensis DSW-74 TaxID=1300349 RepID=A0A1A7BJR9_9SPHN)

HSP 1 Score: 72.4 bits (176), Expect = 1.000e-14
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    4 VAGLDQAGAPTLSS-VVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVAT 165
            VAGL  A  P  +S V+ AVAG +VG+GTRLGSGCTSGHG+CG+ RLS+RS+VAT
Sbjct:   72 VAGLSGAATPAFASPVMLAVAGLIVGVGTRLGSGCTSGHGVCGMSRLSQRSLVAT 126          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: UPI001F34DD11 (YeeE/YedE family protein n=1 Tax=Dyella sp. 2HG41-7 TaxID=2883239 RepID=UPI001F34DD11)

HSP 1 Score: 70.5 bits (171), Expect = 4.420e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   10 GLDQAGAPTLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            G +  G PT+S +   VAG LVG+GTRLGSGCTSGHG+CG+ RLS RS+VATL
Sbjct:   69 GENGIGQPTISWLWMVVAGLLVGVGTRLGSGCTSGHGVCGIARLSARSLVATL 121          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: UPI001667CCE2 (YeeE/YedE family protein n=1 Tax=Silvimonas amylolytica TaxID=449663 RepID=UPI001667CCE2)

HSP 1 Score: 70.1 bits (170), Expect = 7.150e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1
Query:   40 SSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            SSV+  +AG LVGLGTRLGSGCTSGHG+CGL RLS RS+VATL
Sbjct:   84 SSVLLVIAGLLVGLGTRLGSGCTSGHGVCGLSRLSARSLVATL 126          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A553L8M6_9ALTE (YeeE/YedE family protein n=1 Tax=Aliiglaciecola sp. M165 TaxID=2593649 RepID=A0A553L8M6_9ALTE)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-13
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   16 DQAGAPTLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            DQ  AP ++    A+AG LVG+GTR+GSGCTSGHG+CG+ RLS+RSIVATL
Sbjct:   73 DQISAPIIT---LAIAGLLVGIGTRMGSGCTSGHGICGIGRLSKRSIVATL 120          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A258BP21_9SPHN (Sulf_transp domain-containing protein n=1 Tax=Sphingobium sp. 32-64-5 TaxID=1970430 RepID=A0A258BP21_9SPHN)

HSP 1 Score: 69.3 bits (168), Expect = 1.250e-13
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 PVAGLDQAGAPTLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            P+AG   +  P +S  V A+AG +VG+GTRLGSGCTSGHG+CG+ RLS+RSIVATL
Sbjct:   64 PIAGPVVSRFP-MSLPVLAIAGLIVGIGTRLGSGCTSGHGVCGMSRLSKRSIVATL 118          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A1T0CRV9_9GAMM (Uncharacterized protein n=1 Tax=Moraxella pluranimalium TaxID=470453 RepID=A0A1T0CRV9_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.250e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1
Query:   34 TLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            T S+ +  +AG LVGLGTRLGSGCTSGHG+CG+ RLSRRSIVATL
Sbjct:   74 THSTGLLMIAGMLVGLGTRLGSGCTSGHGICGISRLSRRSIVATL 118          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A3N3DVK3_9VIBR (YeeE/YedE family protein n=2 Tax=Vibrio ponticus TaxID=265668 RepID=A0A3N3DVK3_9VIBR)

HSP 1 Score: 69.3 bits (168), Expect = 1.280e-13
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1
Query:   37 LSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            +S V +AVAG LVG+GTRLG+GCTSGHG+CG+ RLS+RSIVAT+
Sbjct:   79 ISLVAFAVAGLLVGVGTRLGNGCTSGHGICGIGRLSKRSIVATV 122          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A419A931_9RHOB (YeeE/YedE family protein n=1 Tax=Paracoccus siganidrum TaxID=1276757 RepID=A0A419A931_9RHOB)

HSP 1 Score: 69.3 bits (168), Expect = 1.340e-13
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   10 GLDQAGAPTLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            GL +A AP     V  +AG LVG GTRLGSGCTSGHG+CG+ RLS R IVATL
Sbjct:   69 GLGRAAAPVAGPWVLVLAGLLVGFGTRLGSGCTSGHGVCGISRLSVRGIVATL 121          
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Match: A0A1V3H6K3_9GAMM (Sulf_transp domain-containing protein n=2 Tax=Salinivibrio TaxID=51366 RepID=A0A1V3H6K3_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.340e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   28 APTLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRRSIVATL 168
            AP L+ +V  +AG LVG+GT+LG+GCTSGHG+CG+ RLS+RSIVATL
Sbjct:   79 APALTPMVAVLAGLLVGIGTKLGNGCTSGHGICGMGRLSKRSIVATL 125          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86233.20059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH2_9PHAE7.050e-2288.89Sulf_transp domain-containing protein n=2 Tax=Ecto... [more]
A0A1A7BJR9_9SPHN1.000e-1467.27Putative transporter component n=1 Tax=Erythrobact... [more]
UPI001F34DD114.420e-1466.04YeeE/YedE family protein n=1 Tax=Dyella sp. 2HG41-... [more]
UPI001667CCE27.150e-1479.07YeeE/YedE family protein n=1 Tax=Silvimonas amylol... [more]
A0A553L8M6_9ALTE1.220e-1366.67YeeE/YedE family protein n=1 Tax=Aliiglaciecola sp... [more]
A0A258BP21_9SPHN1.250e-1364.29Sulf_transp domain-containing protein n=1 Tax=Sphi... [more]
A0A1T0CRV9_9GAMM1.250e-1375.56Uncharacterized protein n=1 Tax=Moraxella pluranim... [more]
A0A3N3DVK3_9VIBR1.280e-1372.73YeeE/YedE family protein n=2 Tax=Vibrio ponticus T... [more]
A0A419A931_9RHOB1.340e-1366.04YeeE/YedE family protein n=1 Tax=Paracoccus sigani... [more]
A0A1V3H6K3_9GAMM1.340e-1368.09Sulf_transp domain-containing protein n=2 Tax=Sali... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86233contigEcto-sp13_S_contig86233:2..169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score99.0
Seed ortholog evalue7.5e-19
Seed eggNOG ortholog2880.D7G370
Model size168
KEGG koko:K07112
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2S27S@2759,COG2391@1
Cds size168
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.1759632-CDS-Ecto-sp13_S_contig86233:1..1691681464135.1759632-CDS-Ecto-sp13_S_contig86233:1..169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86233 2..169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86233.20059.1prot_Ecto-sp13_S_contig86233.20059.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86233 2..169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86233.20059.1

>prot_Ecto-sp13_S_contig86233.20059.1 ID=prot_Ecto-sp13_S_contig86233.20059.1|Name=mRNA_Ecto-sp13_S_contig86233.20059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
PVAGLDQAGAPTLSSVVYAVAGFLVGLGTRLGSGCTSGHGLCGLPRLSRR
SIVATL
back to top

mRNA from alignment at Ecto-sp13_S_contig86233:2..169-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86233.20059.1 ID=mRNA_Ecto-sp13_S_contig86233.20059.1|Name=mRNA_Ecto-sp13_S_contig86233.20059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86233:2..169- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTAGCCGGTCTAGACCAGGCCGGTGCTCCTACTTTATCTTCGGTGGT GTACGCGGTCGCGGGTTTTCTCGTGGGCTTGGGCACCAGGCTTGGCAGCG GGTGCACGAGCGGGCACGGGCTGTGCGGTCTGCCGCGGTTGTCGAGGCGC AGCATCGTCGCAACGCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86233:2..169-

>mRNA_Ecto-sp13_S_contig86233.20059.1 ID=mRNA_Ecto-sp13_S_contig86233.20059.1|Name=mRNA_Ecto-sp13_S_contig86233.20059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86233:2..169- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTAGCCGGTCTAGACCAGGCCGGTGCTCCTACTTTATCTTCGGTGGT
GTACGCGGTCGCGGGTTTTCTCGTGGGCTTGGGCACCAGGCTTGGCAGCG
GGTGCACGAGCGGGCACGGGCTGTGCGGTCTGCCGCGGTTGTCGAGGCGC
AGCATCGTCGCAACGCTC
back to top