mRNA_Ecto-sp13_S_contig8622.20057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8622.20057.1
Unique NamemRNA_Ecto-sp13_S_contig8622.20057.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8622.20057.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.670e-20
Identity = 62/83 (74.70%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:  520 ITSWANAEVAKGDEEGGPLLLGSA-----------AGDDSASAAQSRSNAAQPISAEEVGAQQPPLAGFNTNLSSDQGQADSR 735
            ITSWANAEVAKG EEG  LLLGSA           AGDD+ASAAQSRS+AAQP SAEEVGAQQPPL GF  NLSSD GQADSR
Sbjct:  778 ITSWANAEVAKGKEEGRALLLGSASGVGAGAATGAAGDDNASAAQSRSDAAQPSSAEEVGAQQPPLTGFKINLSSDHGQADSR 860
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BLAST of mRNA_Ecto-sp13_S_contig8622.20057.1 vs. uniprot
Match: D7FKL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.360e-17
Identity = 59/83 (71.08%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:  520 ITSWANAEVAKGDEEGGPLLLGSAAG-----------DDSASAAQSRSNAAQPISAEEVGAQQPPLAGFNTNLSSDQGQADSR 735
            ITSWANAEVAKG+EEGG LLLG A+G                 AQSRS AAQP SAEEVGAQQPPLAGFNTNLSSDQ QADSR
Sbjct:  335 ITSWANAEVAKGEEEGGALLLGGASGVGXXXXXXXXXXXXXXXAQSRSIAAQPSSAEEVGAQQPPLAGFNTNLSSDQ-QADSR 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8622.20057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIA5_9PHAE1.670e-2074.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL1_ECTSI3.360e-1771.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8622contigEcto-sp13_S_contig8622:3..3481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons3
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.0263073-UTR-Ecto-sp13_S_contig8622:2..221681464135.0263073-UTR-Ecto-sp13_S_contig8622:2..22Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8622 3..22 +
1681464135.0598001-UTR-Ecto-sp13_S_contig8622:1640..16841681464135.0598001-UTR-Ecto-sp13_S_contig8622:1640..1684Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8622 1641..1684 +
1681464135.074682-UTR-Ecto-sp13_S_contig8622:3332..34811681464135.074682-UTR-Ecto-sp13_S_contig8622:3332..3481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8622 3333..3481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.0419087-CDS-Ecto-sp13_S_contig8622:22..2491681464135.0419087-CDS-Ecto-sp13_S_contig8622:22..249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8622 23..249 +
1681464135.0512185-CDS-Ecto-sp13_S_contig8622:1345..16401681464135.0512185-CDS-Ecto-sp13_S_contig8622:1345..1640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8622 1346..1640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8622.20057.1prot_Ecto-sp13_S_contig8622.20057.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8622 23..1640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8622.20057.1

>prot_Ecto-sp13_S_contig8622.20057.1 ID=prot_Ecto-sp13_S_contig8622.20057.1|Name=mRNA_Ecto-sp13_S_contig8622.20057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MAPGGRPREAHVPGGGNSGQRHVQLPDRGVRQGGAMEAGAVGAEGDEEAG
PELRHHRLLRGDFRLRGSRAVGVLRGLAGGGQVPGHHPGPGGLHGRGDRV
RGRQPARQGHVPPQGDALGWHTPRRRGVHLPHRRLGPRRAVDPGRRDPGV
DAQDGGSAERDGVQRAHHLVGER*
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mRNA from alignment at Ecto-sp13_S_contig8622:3..3481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8622.20057.1 ID=mRNA_Ecto-sp13_S_contig8622.20057.1|Name=mRNA_Ecto-sp13_S_contig8622.20057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8622:3..3481+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCGTGGCGGCGGCGGGCAATGGCGCCAGGCGGTCGCCCTCGTGAAGCA
CATGTCCCTGGCGGGGGTAACTCCGGACAGCGTCACGTACAACTCCCTGA
TCGTGGCGTGCGGCAAGGGGGGGCAATGGAAGCAGGCGCTGTCGGTGCTG
AAGGGGATGAAGAAGCAGGGCCTGAGTTGCGACATCATCGGCTACTCCGC
GGCGATTTCCGCCTGCGGGGAAGCCGGGCAGTGGGAGTACTCCGTGGGTG
AGAGAGGGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGTCAGGGTTGTTGCTGTTGTGGTTGATGTTGACGG
GGCTGTTATCGTCATTGCTGCCGCTGCCGCCGCTGCTGCTGCTGGTGCTG
CTTTTGCCGTTGCCGTTGTCATCACCATTATTGCTATGGTTGATTATTTT
TTCGCGGTCTGAGGTGCAAACGTGGAACGAGGTGCAGGTAGTGTATGTCG
TGAAACCTGTCGGCTATTGTGAGGTCTGAAAACTCAAGGCAATCCGGCGG
GGTAGTCTTGTTTACTTCCCACAAAAGAGTTTGGAGAGCCTTTCCCCCAG
GGCTCACACAAGCCCGTGTGCCATGACCTACGGCGAAGTATGATCCCCCC
ACACACCCCGCCCTCACAGTGGCCCGCCTTTGTCTGCGTGTGTGTGGAAA
TTCCGTTTACTATATTCACCTTTTTGTCTTCCGCCCACCCTTACTTACTC
TTGCTGCCTGTCTCCCTCCCACACCCAGAAAACGGCTTGATGGCGGAGGC
CAAGTGTGTGTGTGTGTGTCGATCTGCGTACCATTTTGATCGTGTCAGCC
ATCCATCCGTCCGTCCATCAGCTGCCTTGTCTCTCAACCCCCAACCCCTC
CCCCACCCCAACCCACCCTCAAAAAACATTTCAAAGGCTTGATGGCGGAG
GCCAAGTTTGGGTTGGGTTAGTGTTGATTTCTCCGTACGGTGTTCATCTT
GTCGTCCTTCTACAGCCTTGTTTCTCACCCACTCCCCCAACAACATAAAA
CATAAGGCTTGCTGGCAGAGGCCAAGTTTGTGTGTGTACGTCTGTGTGTT
TCTCAATTGTTAGCATCGACCGCGCTACCCGGCTGTCCAAGGAAAAGACG
TCAGTCTTAGTGCGGTTGAAAACATGTATGTGGGTGTTTGTGTGTGTGTG
TCGATTTTGTTGGTACGATTTTCACCGTTTCCTCCATCCGTTCGTCCATC
TGCTGGCTTGTCTCTCACCCCCCCGTCCCCGTCCCCGTCCCCGTCCCCGT
CCCCGTCCCCGTCCCCGTCCCCGTCCCCGCCTAAAACATCAAGGCTTGCT
GGCGGAGGCCAAGTCCCTGGGCATCACCCCGGACCTGGTGGCCTACACGG
CCGCGGTGACCGCGTGCGCGGACGCCAACCAGCGCGACAAGGCCACGTTC
CTCCTCAAGGAGATGCTCTCGGCTGGCATACGCCCCGACGCCGCGGCGTT
CACCTCCCTCATCGCCGCCTTGGGCCACGACGGGCAGTGGACCCAGGCCG
TCGAGATCCTGGAGTCGATGCCCAAGATGGGGGCTCCGCGGAACGCGATG
GTGTACAACGCGCTCATCACCTCGTGGGCGAACGCTGAGGTTGCCAAGGG
GGATGAGGAAGGGGGGCCCCTGCTGCTGGGAAGTGCATCGGGGGTGGGGG
CTGGCGCCGCCACCGGTGAGGGTCGATGGATTTTCTTTTTTGAGATTTGT
GTGTTTTTTTCGTCCGATTCATTATGGCGACAGTCCCCCCATTTTGGTGA
GACGTGTGCTTCACTTTTTAGTGCTGTAGAGTACTTTCGGTGTCTTTTTC
GTACAACTACAACCATCCAGGGTCACACGGGAGGGTTTACACACCAGGAC
TTTTTTTTTCTTCATGCCCCACCTTCCGCCTGCGGTGCGTGCACATGCAC
AGTTAATGAAGGACTGGCGGTGGAGGTGCTATGCACCACAGCAGTCGAAG
AATATGTTTTTGAATATGCACACAATCAATCGTATGATGAAAAGACTACC
CTTCGAGGTAACATATCACAGCAGTCGAAGAAGACTACTTGTTCGAATGT
GTGGCGTATGCATCGCAAGGATTGACTCAAAGGCTACTGTGCATCGGATG
GACGGTAGCCATCGCGCGCACCGGGACAGCAAAGGGCATGTGTATGCAGC
TCGGATAGGATTTGACGTGCTGGGCCATTTAGCAGGTTATTACAGAGTTG
TTTCGTAGGCTGGTAGGGAGTATGAGGTTGCACCTACGCGGGTTAGGGTG
GAAGAGGAGGCGGAACGAGCTGCAGAGGCTGCCAAGTCTGAGGTGAAAAG
GCTTCGGGCAGCACAGCAGTCAGCGGATACATCCGTCCGCAAGCCAACAG
GCCAAGGTCCACTTGCTTCTTCCCGGTAGGACTCTAGTCTGTATCGGTGG
GGTCCATCTGCCCTCGTGCAGTGGGACACAGCAGCGCTGGTGCGGCACCA
GTGCTGCTGTTTCCCACTGCACGTGGCCATGTTGACCCGGCCAATGCAGA
TACAGAGTCCTACCATGAAGGAGCAACTGGAGCTTGGCCTCCTGGCTCGC
GGGCGGATGTATCCGCCGACTGCTGTGCTGCCCTAAGCCTCTTCACCTCA
GACTCGGTAGCCTCTGCAGCTCGTTCCGCCTCCTCTGTACCAGCAACACG
ACACAACTCTGTAGCCTGCTAATGTCCCAGCCCCTTGAAATGTGGACCGA
ACTCAAATTACATACATTTCTGTCGTGGTCACTGTCCCACCTATCATGCA
ATACCCACGACTGACTGCCGTCCCCGCCCCTTGTGGCTGAAGTCCCTGCT
TGAATGAAAACTCCAGGAGAGTCGCGCATGCCGCGCCCGACTCACCCAGC
ACAGCAGTTCCTGCTGCTGCTTCTGTGTTTGATCGGGAGAGTAGCGTAGC
CTCCTCCATGACGCTCTCCCAGACGGGGTCCTGTAGAAGCCGTTTCCGTT
TTTCGCCGCTTGAGGACTGACGTCATGTTATTGGTCAAGCGGTCAGTGCA
CCACTTTGTTTTCCGTTTCACATTTTTTTTTTTTTTCAGGCTGATGCGCT
ACGTAGTGTTTGCACGGGCGATCGCTCAACAATAGCGGGGGTATCCTTGA
AGTGATTGTACGTTTGTCGTATGCTTCTCGTAATCATTCAACCAGCCTAG
CCGCTAAAGGCGCGTGTTGGAGTCGACGCAACAACAAGGGTCCAACGACC
GGCCGAATCTGCGAATGTGACTCGCCTAGTTCCCGAACCATCCCCTTTCG
ATGATAACACGGCTCCCCTGCTGTGTACAGGTGCCGCGGGCGATGACAGC
GCCAGCGCAGCGCAATCAAGAAGTAATGCGGCGCAACCAATCAGCGCGGA
AGAAGTAGGAGCGCAGCAGCCCCCGTTGGCAGGTTTCAACACGAATTTAT
CTTCCGACCAAGGGCAAGCGGACTCTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8622:3..3481+

>mRNA_Ecto-sp13_S_contig8622.20057.1 ID=mRNA_Ecto-sp13_S_contig8622.20057.1|Name=mRNA_Ecto-sp13_S_contig8622.20057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8622:3..3481+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCAGGCGGTCGCCCTCGTGAAGCACATGTCCCTGGCGGGGGTAA
CTCCGGACAGCGTCACGTACAACTCCCTGATCGTGGCGTGCGGCAAGGGG
GGGCAATGGAAGCAGGCGCTGTCGGTGCTGAAGGGGATGAAGAAGCAGGG
CCTGAGTTGCGACATCATCGGCTACTCCGCGGCGATTTCCGCCTGCGGGG
AAGCCGGGCAGTGGGAGTACTCCGTGGGCTTGCTGGCGGAGGCCAAGTCC
CTGGGCATCACCCCGGACCTGGTGGCCTACACGGCCGCGGTGACCGCGTG
CGCGGACGCCAACCAGCGCGACAAGGCCACGTTCCTCCTCAAGGAGATGC
TCTCGGCTGGCATACGCCCCGACGCCGCGGCGTTCACCTCCCTCATCGCC
GCCTTGGGCCACGACGGGCAGTGGACCCAGGCCGTCGAGATCCTGGAGTC
GATGCCCAAGATGGGGGCTCCGCGGAACGCGATGGTGTACAACGCGCTCA
TCACCTCGTGGGCGAACGCTGA
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