mRNA_Ecto-sp13_S_contig8609.20036.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8609.20036.1
Unique NamemRNA_Ecto-sp13_S_contig8609.20036.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.200e-40
Identity = 81/119 (68.07%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:    1 LGSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFTIEDPPPTEAPAPNPWVDNSTTPAPGTTPSPTTTTIGPVLVGPSTAPTTPAPLDAGATGYLGCF 357
            LGSTFFGVQ+SFQCFCGPSTADY KHGSL+SDNCEYLC+A P+ FCGGF+T+EVFTI DP PTEAPAP P V N +T AP                  STAPTTPAP++AGA GYLGCF
Sbjct:  472 LGSTFFGVQFSFQCFCGPSTADYDKHGSLSSDNCEYLCDANPDFFCGGFSTIEVFTIGDPTPTEAPAPTPLV-NPSTQAPXXXXXXXXXXXXXXXX--STAPTTPAPVNAGAAGYLGCF 587
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.800e-37
Identity = 81/120 (67.50%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:    1 LGSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFTIEDPPPTEAPAPNPWVDNSTTPAPGTTPSPTTTTIGPVLVGPSTAPTTPAPLDAGATGYLGCFA 360
            LGSTFFGVQYSFQ                          AYP+EFCGGF+TMEVFTIEDP PTEAPAP P +++STT APG TPSPTTTT+GPVLVGPSTAPTTPAPLDAG  GYLGCFA
Sbjct:  539 LGSTFFGVQYSFQ--------------------------AYPDEFCGGFSTMEVFTIEDPLPTEAPAPTPLMNHSTT-APGATPSPTTTTVGPVLVGPSTAPTTPAPLDAGVAGYLGCFA 631
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: A0A6H5JZZ1_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.120e-29
Identity = 62/118 (52.54%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:    4 GSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFTIEDPPPTEAPAPNPWVDNSTTPAPGTTPSPTTTTIGPVLVGPSTAPTTPAPLDAGATGYLGCF 357
            G+TFFGVQ++++CFCG STADY KHGSL   +CEYLC+A P++FCGGF+ MEVFTIE P  TEAPA +P V     P     PSPTTT                 P DA    YLGC+
Sbjct:    5 GATFFGVQFAYECFCGSSTADYDKHGSLPDSDCEYLCDANPDQFCGGFSAMEVFTIEAPAETEAPATSPLVAQPIEPI---APSPTTT-----------------PSDAS---YLGCY 99
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.760e-27
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 LGSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFTIE 174
            LGSTF GVQ SFQCFCGPSTADYAKHGSL+SDNCEYLC A+PE+FCGGF+TMEVF I+
Sbjct:  391 LGSTFSGVQNSFQCFCGPSTADYAKHGSLSSDNCEYLCHAHPEDFCGGFSTMEVFRID 448
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.180e-17
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 GSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEV 162
            G+T+FGV++S++CFCG STAD+ KHGSL    CEYLC+A P++FCGGF  +EV
Sbjct:  620 GATYFGVEFSYECFCGSSTADFDKHGSLPDSECEYLCDANPDQFCGGFGAIEV 672
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: A0A6H5L0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X8_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.590e-13
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:  157 EVFTIEDPPPTEAPAPNPWVDNSTTPAPGT-TPSPTTTTIGPVLVGPSTAPTTPAPLDAGATGYLGCF 357
            +VFTI DP PTEAPAP  +V N +T APGT +P PT    GPVLVGPSTAPTTP P++AGA GYLGCF
Sbjct:   27 KVFTIGDPTPTEAPAPTIFV-NPSTKAPGTLSPVPT---AGPVLVGPSTAPTTPVPVNAGAAGYLGCF 90
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 6.620e-9
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 GSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFT 168
            GST+FG+QY  +CFCG S+ D  +HG  T+  C+Y C    +E CGGF  M V++
Sbjct:  460 GSTYFGMQYGRECFCGGSSTDLLQHGESTA--CDYECPGDSDELCGGFYAMSVYS 512
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.480e-6
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    4 GSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFTIEDPP 183
            GST+FG +Y+F+CFC  S     + G  +  NC+  C     E CGGF  ++V+ +ED P
Sbjct:  325 GSTYFGTEYAFECFCSSSGDSPDELGEAS--NCDMTCSGDSSETCGGFNAIQVYMLEDGP 382
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: A0A6G1NFZ1_VERDA (tRNA (Guanine-N(7)-)-methyltransferase subunit TRM82 n=11 Tax=Verticillium TaxID=1036719 RepID=A0A6G1NFZ1_VERDA)

HSP 1 Score: 51.6 bits (122), Expect = 4.310e-5
Identity = 20/60 (33.33%), Postives = 33/60 (55.00%), Query Frame = 1 
Query:    4 GSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFTIEDPP 183
            GST+FGV+Y  +C+CG +  D     +   D+C +LC      FCG    ++++ + D P
Sbjct: 1401 GSTYFGVEYGRECYCGDALRDATVKRADNQDDCSFLCPGDKTTFCGAGVRLQLYKLGDAP 1460
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BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.070e-5
Identity = 20/57 (35.09%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    4 GSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFATMEVFTIE 174
            G +F+G+QYS QC+CG    +Y+ +G      C+  C     + CGGF +M++++I+
Sbjct:  263 GFSFYGLQYSIQCWCGDHNTEYSANGDGV---CDMPCGGDAYDMCGGFYSMDIYSID 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8609.20036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G957_ECTSI2.200e-4068.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G961_ECTSI1.800e-3767.50Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZZ1_9PHAE7.120e-2952.54WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G960_ECTSI5.760e-2784.48Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G4P3_ECTSI2.180e-1762.26Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5L0X8_9PHAE2.590e-1369.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRS2_ECTSI6.620e-947.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC73_ECTSI3.480e-640.00Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6G1NFZ1_VERDA4.310e-533.33tRNA (Guanine-N(7)-)-methyltransferase subunit TRM... [more]
A0A6H5JVT8_9PHAE5.070e-535.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8609contigEcto-sp13_S_contig8609:893..3564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.1
Seed ortholog evalue4.2e-35
Seed eggNOG ortholog2880.D7G957
Model size363
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
Cds size360
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.4478612-CDS-Ecto-sp13_S_contig8609:892..9311681464133.4478612-CDS-Ecto-sp13_S_contig8609:892..931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8609 893..931 +
1681464133.4616454-CDS-Ecto-sp13_S_contig8609:1410..14881681464133.4616454-CDS-Ecto-sp13_S_contig8609:1410..1488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8609 1411..1488 +
1681464133.470967-CDS-Ecto-sp13_S_contig8609:2272..23141681464133.470967-CDS-Ecto-sp13_S_contig8609:2272..2314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8609 2273..2314 +
1681464133.4796855-CDS-Ecto-sp13_S_contig8609:3362..35631681464133.4796855-CDS-Ecto-sp13_S_contig8609:3362..3563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8609 3363..3563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8609.20036.1prot_Ecto-sp13_S_contig8609.20036.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8609 893..3563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8609.20036.1

>prot_Ecto-sp13_S_contig8609.20036.1 ID=prot_Ecto-sp13_S_contig8609.20036.1|Name=mRNA_Ecto-sp13_S_contig8609.20036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
LGSTFFGVQYSFQCFCGPSTADYAKHGSLTSDNCEYLCEAYPEEFCGGFA
TMEVFTIEDPPPTEAPAPNPWVDNSTTPAPGTTPSPTTTTIGPVLVGPST
APTTPAPLDAGATGYLGCFA
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mRNA from alignment at Ecto-sp13_S_contig8609:893..3564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8609.20036.1 ID=mRNA_Ecto-sp13_S_contig8609.20036.1|Name=mRNA_Ecto-sp13_S_contig8609.20036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8609:893..3564+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGGCTCCACCTTCTTTGGCGTGCAGTACTCCTTCCAGGTCTGTCTGTC
TGTCTGCCTACCGTGTCACAGTGCGTGCACCTTCCGATCGATATATGATC
TCCCTTCCAGACTCGGCAGCTTGTACTTATCATACATACATAGCATCCCC
CGCGCGTATGCAGTAGATACAGCACAGATATAGCGCTCCACCTTCTCCGG
CGTGCAATACTCCTTCCAGGGGAGGGGAAAAACTTGAACCCGCCCCTAAA
CGCATGCGAGTGAGCCTATATTTATGCATGTAGGATACTACTGTACAGTA
CGTACAAAAATAACATTGGACTCGTTAAAAAAACCTGATCAGCACTTACT
GTATTATGAATTGGGAGTCGTTGGCGATTGTCTGACGCGATCAATCGACC
TGTCTCCTTTGATTCCAGACTTTGCAGCGTACGTTAATTAACATGTCCAC
AACGCGTCGTGCGTGGACTTTTTTGTTCGCTTCTTTTTCTCTCCGGTTTC
ATTCCCGGACCAAACCAGTGCTTCTGCGGCCCGTCCACAGCTGACTACGC
CAAGCACGGATCTCTGACTTCCGACAACTGCGAGTACCTGTGCGAGGCGA
GTGGCGAGTAGAGCAACTCATCTTATGGCGGACTGATTTGATTCGTCGTC
TCCTAGCCATGGGTTTGACAACAAGAAGTCGATTTCAACATGTGCAGCTG
CTATGTACGCCGAGAAATAGTCGCCTCGTACGTCATGCGAACATTCTTTT
CTCAGAATGTTCACCCTTGCCGCTTCCATTATTCCTTGCGAGCACCTGTG
CGAGGAGAGTGACGAGTAGAGCAACCCACCGCCCGTTCTTGAGTACCTGT
CTGTGCGATGTGGACTGCATGGGATAGAGCAACAAGGTGGTCCTTTCGTA
CGGACTAAAAACAAGGCGTCGGTTTAATGATGTAACACTCGGACGAAGTA
AGCGAACAATAGAGCAACCCACACGAGGCATTTACAAGTACGTAGTCCGT
AAAAATGGTGTCCGTCGCCTGTTGCTTGGGGAGAGGGTTCGTTTCTCAGA
ATGTTTGCTTGCCTCCTTCTCGGTTCGCTGCGACCACCTACGTACCCGCG
TGAAGAAAGTGAAGAATAGAGCGACCCACTTGACCTACTTGGCTTGTCGT
CTCCCAAAGGCTGACAACAACAAAAAAGGCGCTCTCGCTCTCCTTCAGGT
TTGTTTCAACTTGTCGCTTACGTCCCTTCAGGCCAACCCTGTCTGAAGTA
TGCATACGACTACTGTGTATGTCCCCGAAAAATAGTCGCCGCGTTCTCTC
GGAGCATTCACTTTTTCTCAGAATATGTTTTGTGACCCTCTCGTTTTGGT
CTCTTATTTTTGTTTCGTACGTCCCTTCAGGCCTACCCGGAGGAATTCTG
CGGTGGATTCGCCACCATGGAGGTGAGCCCCAGTGCTTTGGAGGCGGGTA
GATTGCTGTCGGAAAGGCGGACAGAAGACGGTTGACTAAAAGACCTTGTT
CATTTACGATGTGGTGCACCGGGCATGCTTGCCCCATTCACGTAGAACGG
ACAGGCTACCAACGATACACTGAACCCCCTACAGATCTCTGTATTTCCGC
ATCAAGTGCGAGTTAGCCCCCCCCTCCTTTTTTTCGAGGTACGAAGACGA
CGCGTCTACCATAGGAGGCGGAGGGATGACACCCCTTTACTACGGTTGAC
CGGCTTTCAACGCTCGATTGCCCCGCAACCAAGTGGGTGCGGCAAGAGCC
CGATACGTCTGTCTGCGGAAAGCCGTCGACGAAGGATCTCCCCGTAACCA
CCATGCTTTGTTAGTGGTGTTGACACAAGCAAGCTTGGTTTTTGAGCAAT
CGCGCTTTAAAAGTTGGTCTACAGTATGGGGGGGTGTCATCTGTCCGCCT
CTTGCAGCAATGGCACCATATGGTCCATGCATTAGATGCAGAGTCCAACG
AGCAGTGAACGGCGCCGGTTGGTTCGCCTTCTTTTTCGCTTAGCTGCCCC
TTTCGGGGAGAAAGTTCTCGTCTCTCTTGAGGCGACCAACCTCGGCACGG
TCACTTCTTCGCCGTGCAACTCAATCCCGGGACTCTCGAACTACTGTACA
GACTGGTCGTGCCTGCTGAATGTGAAACGATTTTTGCTAGCCGCGATGAC
CATAGCATTTGATCTGGATCGGCCCCACAAATACACAAAGATTTAGCTTC
TGGTCCATCCTTGTCAAACGACAACAGCCTGGGCCGGCGAAAACCCGGCA
TGTCGCTCTGTGGTCGCGGCATTGTACAGATGCGAGAGGAGGTGAATGGC
CCAACGACTACGGCATGCACGGCTACGAGCTACCCCCACCCCTCACCTAC
ACCTCAGCTCCCCCCCCCCTCTCAACACGAGTTGCCCGACATCCTCCTCT
CCCCCCTCAAACTCACTTTTCCTCGCCGCCGTGCCCTCTTTTAATTGGTA
CCTATATGGGATATTCTCAGGTCTTCACGATCGAGGATCCCCCACCGACC
GAGGCCCCCGCGCCCAACCCGTGGGTGGACAACTCGACTACACCGGCGCC
GGGCACCACCCCTTCGCCCACGACTACCACGATTGGGCCGGTCCTCGTCG
GCCCCTCCACGGCCCCTACGACCCCGGCCCCCCTGGACGCCGGGGCCACT
GGCTACCTGGGCTGCTTCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8609:893..3564+

>mRNA_Ecto-sp13_S_contig8609.20036.1 ID=mRNA_Ecto-sp13_S_contig8609.20036.1|Name=mRNA_Ecto-sp13_S_contig8609.20036.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8609:893..3564+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGGCTCCACCTTCTTTGGCGTGCAGTACTCCTTCCAGTGCTTCTGCGG
CCCGTCCACAGCTGACTACGCCAAGCACGGATCTCTGACTTCCGACAACT
GCGAGTACCTGTGCGAGGCCTACCCGGAGGAATTCTGCGGTGGATTCGCC
ACCATGGAGGTCTTCACGATCGAGGATCCCCCACCGACCGAGGCCCCCGC
GCCCAACCCGTGGGTGGACAACTCGACTACACCGGCGCCGGGCACCACCC
CTTCGCCCACGACTACCACGATTGGGCCGGTCCTCGTCGGCCCCTCCACG
GCCCCTACGACCCCGGCCCCCCTGGACGCCGGGGCCACTGGCTACCTGGG
CTGCTTCGCG
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