prot_Ecto-sp13_S_contig12410.2003.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12410.2003.1
Unique Nameprot_Ecto-sp13_S_contig12410.2003.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length111
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12410.2003.1 vs. uniprot
Match: A0A6H5KCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 4.740e-40
Identity = 99/112 (88.39%), Postives = 100/112 (89.29%), Query Frame = 0 
Query:    1 MGRDFTAIFTSSLVLLLCPGPDAFVPSARIRSPLSTAPPR--HRVEGLPLTRRTRPSLPCTHSSAQQQADNGHGSXXXXXXXXXXXXXXXXXXAANGPASVVRFRVLRGGNP 110
            MGRD TAIFTSSLV+LLCPGPDAFVPSARI  PLS APPR  HRVEGLPLTRRTRPSLPCT SSAQQQADN    XXXXXXXXXXXXXXXXXX ANGPASVVRFRVLRGGNP
Sbjct:    1 MGRDLTAIFTSSLVVLLCPGPDAFVPSARIGPPLSAAPPRPRHRVEGLPLTRRTRPSLPCTRSSAQQQADNRXXXXXXXXXXXXXXXXXXXXXTANGPASVVRFRVLRGGNP 112
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BLAST of mRNA_Ecto-sp13_S_contig12410.2003.1 vs. uniprot
Match: D7FS11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS11_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.110e-30
Identity = 85/92 (92.39%), Postives = 85/92 (92.39%), Query Frame = 0 
Query:   20 GPDAFVPSARIRSPLSTAPPRHRVEGLPLTRRTRPSLPCTHSSAQQQADNGHGSXXXXXXXXXXXXXXXXXXAA-NGPASVVRFRVLRGGNP 110
            GPDAFVPSARIR PLSTAPPRHRVEGLPLTRRT  SLPCTHSSAQQQADNGHG XXXXXXXXXXXXXXXXXX   NGPASVVRFRVLRGGNP
Sbjct:    3 GPDAFVPSARIRPPLSTAPPRHRVEGLPLTRRTPWSLPCTHSSAQQQADNGHGXXXXXXXXXXXXXXXXXXXXXXNGPASVVRFRVLRGGNP 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12410.2003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA4_9PHAE4.740e-4088.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS11_ECTSI2.110e-3092.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..111
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.586

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12410contigEcto-sp13_S_contig12410:1797..2928 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12410.2003.1mRNA_Ecto-sp13_S_contig12410.2003.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12410 1797..2928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12410.2003.1 ID=prot_Ecto-sp13_S_contig12410.2003.1|Name=mRNA_Ecto-sp13_S_contig12410.2003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MGRDFTAIFTSSLVLLLCPGPDAFVPSARIRSPLSTAPPRHRVEGLPLTR
RTRPSLPCTHSSAQQQADNGHGSSEHHDDNVRSTPQRRPPPAANGPASVV
RFRVLRGGNPL
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