mRNA_Ecto-sp13_S_contig86046.20032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86046.20032.1
Unique NamemRNA_Ecto-sp13_S_contig86046.20032.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: D7FUQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 3.950e-20
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   19 EADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVR 144
            EADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLV+
Sbjct:   97 EADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVK 138
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A836CAV3_9STRA (Leo1-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.310e-17
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   19 EADEFKFTTNIIR----------WRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDR 216
            E + FKFTTNIIR          WRH++   G  E  + G  +RE+NTRLV+WSDGS QL+VG+E FDV EH++D+
Sbjct:  129 EDETFKFTTNIIRQAYFNSLTLEWRHRKDASGALEYDEHGEPIRETNTRLVKWSDGSLQLMVGEEVFDVSEHALDK 204
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A448YW85_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW85_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.040e-11
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 DCSSSQEADEFK-FTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVE 198
            D    +E + +K +  N+IRWR+K+ + G P + D+   +RESNT+LV+WSDGS  L +G EAFD++
Sbjct:  175 DYDEKEEEETYKGYVHNMIRWRYKKDDNGNP-MRDERGLIRESNTKLVKWSDGSFTLHIGKEAFDIQ 240
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A2R2MJW2_LINUN (RNA polymerase-associated protein LEO1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MJW2_LINUN)

HSP 1 Score: 62.4 bits (150), Expect = 1.360e-9
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   46 NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDV 195
            N IRWR K+   G   + ++G+ LRESN R++RWSDGS  L +G+E FDV
Sbjct:  370 NTIRWRPKKDEFGNIMMDENGKQLRESNARIIRWSDGSMSLHLGNEVFDV 419
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: B7FUI2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUI2_PHATC)

HSP 1 Score: 61.2 bits (147), Expect = 3.400e-9
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   13 SQEADEF-KFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVE 198
            + E D+F +   N++RWR+++ + G     +  R LRESN+RLV+W DGS  L +G+EAF+++
Sbjct:  159 AMEEDDFGQSVYNLVRWRYRKDDTGNYVRDEQDRLLRESNSRLVQWEDGSYTLHIGNEAFEID 221
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A015M919_RHIIW (Leo1p n=6 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015M919_RHIIW)

HSP 1 Score: 61.2 bits (147), Expect = 3.450e-9
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   10 SSQEADEFKFTT-------NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDRR 219
            S  E D++K  T       N IRWR+KR  +G    G+    ++ESNT++++WSDGS  LL+G+E F +  H I ++
Sbjct:  219 SYTEEDDYKHETTIRLGAENTIRWRYKRNEMG----GET--EVKESNTKMIKWSDGSMSLLIGEEMFLINSHDISKQ 289
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A3S1HL45_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1HL45_ELYCH)

HSP 1 Score: 61.2 bits (147), Expect = 3.500e-9
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   46 NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDV 195
            N +RWR K    G   L ++G+ LRESN R+V+WSDGS  L +GDE FDV
Sbjct:  507 NTVRWRKKLDADGNEMLDEEGKPLRESNARIVKWSDGSMSLHLGDEIFDV 556
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A2Z6QG44_9GLOM (Uncharacterized protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QG44_9GLOM)

HSP 1 Score: 60.8 bits (146), Expect = 4.710e-9
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   10 SSQEADEFKFTT-------NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDRR 219
            S  E D++K  T       N IRWR+KR  +G    G+    ++ESNT++++WSDGS  LL+G+E F +  H I ++
Sbjct:  218 SYTEEDDYKHETTIRLGAENTIRWRYKRNEMG----GET--EVKESNTKMIKWSDGSMTLLIGEEMFLINSHDISKQ 288
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A7S0N493_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N493_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 6.320e-9
Identity = 28/61 (45.90%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:   34 KFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDR 216
            K   N++RWRH     G P        ++ESN R VRWSDGS QLL+GDE  DV E    +
Sbjct:  169 KLFQNVVRWRHSYTPQGEP--------IKESNARFVRWSDGSVQLLLGDEVLDVTEQDTSK 221
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BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Match: A0A2Z7AR72_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AR72_9LAMI)

HSP 1 Score: 60.5 bits (145), Expect = 6.360e-9
Identity = 29/58 (50.00%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:   40 TTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSID 213
            + NIIRWR           G DG    ESN R V WSDGS QLL+GDE FDV E +++
Sbjct:  194 SANIIRWRQV--------TGPDGNISLESNARFVTWSDGSLQLLIGDECFDVSEQAVE 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86046.20032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUQ9_ECTSI3.950e-2097.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAV3_9STRA2.310e-1751.32Leo1-like protein-domain-containing protein n=1 Ta... [more]
A0A448YW85_9STRA8.040e-1144.78Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A2R2MJW2_LINUN1.360e-952.00RNA polymerase-associated protein LEO1 n=1 Tax=Lin... [more]
B7FUI2_PHATC3.400e-941.27Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A015M919_RHIIW3.450e-938.96Leo1p n=6 Tax=Rhizophagus irregularis TaxID=588596... [more]
A0A3S1HL45_ELYCH3.500e-954.00Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A2Z6QG44_9GLOM4.710e-938.96Uncharacterized protein n=2 Tax=Rhizophagus clarus... [more]
A0A7S0N493_9CHLO6.320e-945.90Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A2Z7AR72_9LAMI6.360e-950.00Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86046contigEcto-sp13_S_contig86046:9..236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score60.8
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog2850.Phatr44561
Preferred nameLEO1
Model size228
KEGG koko:K15177
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001501,GO:0001650,GO:0001672,GO:0001704,GO:0001706,GO:0001711,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007369,GO:0007399,GO:0007417,GO:0007492,GO:0007507,GO:0008023,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010001,GO:0010048,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010847,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016591,GO:0016593,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0021510,GO:0021515,GO:0021529,GO:0021782,GO:0022008,GO:0022607,GO:0030154,GO:0030318,GO:0030880,GO:0031056,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031399,GO:0031440,GO:0031442,GO:0031445,GO:0031452,GO:0031454,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033523,GO:0033696,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035206,GO:0035987,GO:0036211,GO:0042063,GO:0042127,GO:0043009,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043473,GO:0043631,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044877,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045798,GO:0045893,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0048066,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048580,GO:0048581,GO:0048583,GO:0048598,GO:0048646,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048709,GO:0048731,GO:0048762,GO:0048831,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0050931,GO:0050936,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0055029,GO:0060255,GO:0060485,GO:0060795,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0099122,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902275,GO:1902494,GO:1902680,GO:1903311,GO:1903313,GO:1903320,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1904837,GO:1904888,GO:1905268,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2000819,GO:2001020,GO:2001141,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001251
Exons1
EggNOG free text desc.RNA polymerase II C-terminal domain phosphoserine binding
EggNOG OGs2XDHC@2836,KOG2428@1,KOG2428@2759
Cds size228
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.0598714-CDS-Ecto-sp13_S_contig86046:8..2361681464133.0598714-CDS-Ecto-sp13_S_contig86046:8..236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86046 9..236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86046.20032.1prot_Ecto-sp13_S_contig86046.20032.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86046 9..236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86046.20032.1

>prot_Ecto-sp13_S_contig86046.20032.1 ID=prot_Ecto-sp13_S_contig86046.20032.1|Name=mRNA_Ecto-sp13_S_contig86046.20032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
DCSSSQEADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWS
DGSTQLLVGDEAFDVEEHSIDRRAS*
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mRNA from alignment at Ecto-sp13_S_contig86046:9..236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86046.20032.1 ID=mRNA_Ecto-sp13_S_contig86046.20032.1|Name=mRNA_Ecto-sp13_S_contig86046.20032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86046:9..236+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATTGTTCTTCTTCTCAGGAAGCGGATGAGTTCAAGTTCACGACCAACAT
CATCCGGTGGCGGCACAAGCGGGGCAACCTCGGTAGGCCGGAGCTGGGAG
ACGACGGCAGGGCCCTGAGGGAGAGCAACACCCGCCTCGTGAGATGGAGC
GATGGCTCGACCCAGCTGCTAGTCGGCGACGAGGCCTTCGACGTCGAGGA
GCACTCTATCGACAGGCGAGCGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86046:9..236+

>mRNA_Ecto-sp13_S_contig86046.20032.1 ID=mRNA_Ecto-sp13_S_contig86046.20032.1|Name=mRNA_Ecto-sp13_S_contig86046.20032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86046:9..236+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATTGTTCTTCTTCTCAGGAAGCGGATGAGTTCAAGTTCACGACCAACAT
CATCCGGTGGCGGCACAAGCGGGGCAACCTCGGTAGGCCGGAGCTGGGAG
ACGACGGCAGGGCCCTGAGGGAGAGCAACACCCGCCTCGTGAGATGGAGC
GATGGCTCGACCCAGCTGCTAGTCGGCGACGAGGCCTTCGACGTCGAGGA
GCACTCTATCGACAGGCGAGCGTCGTGA
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