mRNA_Ecto-sp13_S_contig86041.20030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86041.20030.1
Unique NamemRNA_Ecto-sp13_S_contig86041.20030.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: D7FXN8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXN8_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.000e-24
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 NARMTVASGSAGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
            N RMTVASGSAGCSNCGK GSLRPCSRC  VRYCSRDCQRQHW+DHKRDCG
Sbjct: 1335 NPRMTVASGSAGCSNCGKVGSLRPCSRCHQVRYCSRDCQRQHWRDHKRDCG 1385          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A8H3H5H6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3H5H6_9AGAM)

HSP 1 Score: 59.3 bits (142), Expect = 6.100e-9
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   34 GCSNCGKDGS-LRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
            GC  C K G+ L  C RC+  RYCS +CQR+HWKDHKRDC
Sbjct: 1117 GCWACAKSGAPLSACGRCQRARYCSTECQREHWKDHKRDC 1156          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A8H5C6D7_9AGAR (MYND-type domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5C6D7_9AGAR)

HSP 1 Score: 58.2 bits (139), Expect = 1.030e-8
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   34 GCSNCGKDGS-LRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
            GC+ CG++GS LR C RC  V+YC  DCQ+ HWK HK+DC
Sbjct:  197 GCAGCGREGSGLRRCGRCGKVKYCGADCQKGHWKIHKKDC 236          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: D8LNQ8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNQ8_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    4 ARMTVAS--GSAGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
            A+M  AS  G   C+ CG  G    C+RCR V YCS++CQRQHWK HK  CG
Sbjct: 1321 AKMAAASVAGPPKCAKCGIGGKSLQCTRCRKVSYCSKECQRQHWKIHKAACG 1372          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: UPI0020080B4F (uncharacterized protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020080B4F)

HSP 1 Score: 58.2 bits (139), Expect = 1.550e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   34 GCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
            GC+ CGK+G+ R CSRC+ VRYCS DCQR  WK+HK DC
Sbjct:  266 GCAVCGKEGASR-CSRCQIVRYCSSDCQRADWKNHKPDC 303          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A2P6VG49_9CHLO (Ankyrin n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VG49_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 1.930e-8
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   31 AGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
            A C NCGK G+ R C+ C    YCSR+CQR HWK+HK  CG
Sbjct:   36 AACFNCGKAGTTRRCTGCLAALYCSRNCQRAHWKEHKGRCG 76          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A8H5C897_9AGAR (MYND-type domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5C897_9AGAR)

HSP 1 Score: 57.4 bits (137), Expect = 2.550e-8
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   37 CSNCGK--DGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
            C NCGK   G LR C+RC +V+YC  DCQ+QHWK HK++C
Sbjct:  251 CGNCGKRSGGKLRRCTRCGNVKYCGPDCQKQHWKLHKKNC 290          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A2P6VFU6_9CHLO (Ankyrin n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFU6_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 2.910e-8
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   31 AGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
            A C NCGK G+ R C+ C    YCSR+CQR HWK+HK  CG
Sbjct:  751 AACFNCGKAGATRRCTGCLAALYCSRNCQRAHWKEHKGRCG 791          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A0C3AGJ9_9AGAM (MYND-type domain-containing protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3AGJ9_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 2.920e-8
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query:   34 GCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
            GC  CGK+G    CSRC++ +YCS+ CQ Q WK HK+DC 
Sbjct: 1154 GCRACGKEGKTLSCSRCKNAKYCSKQCQVQDWKAHKKDCA 1193          
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A7S2UNG7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNG7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.900e-8
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   37 CSNCGKDGSL-RPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
            C+ CG D ++ R CSRCR V YC RDCQR HWKDHKR C
Sbjct:   18 CAACGIDTTMIRGCSRCRTVGYCGRDCQRGHWKDHKRVC 56          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXN8_ECTSI3.000e-2490.20MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A8H3H5H6_9AGAM6.100e-962.50Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A8H5C6D7_9AGAR1.030e-860.00MYND-type domain-containing protein n=1 Tax=Tulose... [more]
D8LNQ8_ECTSI1.140e-853.85MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
UPI0020080B4F1.550e-866.67uncharacterized protein n=1 Tax=Epithele typhae Ta... [more]
A0A2P6VG49_9CHLO1.930e-858.54Ankyrin n=1 Tax=Micractinium conductrix TaxID=5540... [more]
A0A8H5C897_9AGAR2.550e-860.00MYND-type domain-containing protein n=1 Tax=Tulose... [more]
A0A2P6VFU6_9CHLO2.910e-858.54Ankyrin n=1 Tax=Micractinium conductrix TaxID=5540... [more]
A0A0C3AGJ9_9AGAM2.920e-855.00MYND-type domain-containing protein n=1 Tax=Sclero... [more]
A0A7S2UNG7_9STRA3.900e-866.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86041contigEcto-sp13_S_contig86041:291..446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.9847112-CDS-Ecto-sp13_S_contig86041:290..4371681464132.9847112-CDS-Ecto-sp13_S_contig86041:290..437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86041 291..437 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.9971159-UTR-Ecto-sp13_S_contig86041:437..4461681464132.9971159-UTR-Ecto-sp13_S_contig86041:437..446Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86041 438..446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86041.20030.1prot_Ecto-sp13_S_contig86041.20030.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86041 291..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86041.20030.1

>prot_Ecto-sp13_S_contig86041.20030.1 ID=prot_Ecto-sp13_S_contig86041.20030.1|Name=mRNA_Ecto-sp13_S_contig86041.20030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MTVASGSAGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG*
back to top

mRNA from alignment at Ecto-sp13_S_contig86041:291..446-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86041.20030.1 ID=mRNA_Ecto-sp13_S_contig86041.20030.1|Name=mRNA_Ecto-sp13_S_contig86041.20030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86041:291..446- (Ectocarpus species13 EcNAP12_S_4_19m)
AATGCCAGGATGACTGTTGCTTCTGGTTCAGCGGGGTGCTCCAATTGCGG AAAGGATGGCTCTCTGAGGCCGTGCTCTCGCTGCCGCCATGTGCGCTACT GCTCGAGGGACTGCCAGCGCCAGCACTGGAAGGATCATAAGCGTGATTGT GGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86041:291..446-

>mRNA_Ecto-sp13_S_contig86041.20030.1 ID=mRNA_Ecto-sp13_S_contig86041.20030.1|Name=mRNA_Ecto-sp13_S_contig86041.20030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86041:291..446- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGTTGCTTCTGGTTCAGCGGGGTGCTCCAATTGCGGAAAGGATGG
CTCTCTGAGGCCGTGCTCTCGCTGCCGCCATGTGCGCTACTGCTCGAGGG
ACTGCCAGCGCCAGCACTGGAAGGATCATAAGCGTGATTGTGGGTAG
back to top