mRNA_Ecto-sp13_S_contig86041.20030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: D7FXN8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXN8_ECTSI) HSP 1 Score: 102 bits (255), Expect = 3.000e-24 Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1
Query: 1 NARMTVASGSAGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
N RMTVASGSAGCSNCGK GSLRPCSRC VRYCSRDCQRQHW+DHKRDCG
Sbjct: 1335 NPRMTVASGSAGCSNCGKVGSLRPCSRCHQVRYCSRDCQRQHWRDHKRDCG 1385
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A8H3H5H6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3H5H6_9AGAM) HSP 1 Score: 59.3 bits (142), Expect = 6.100e-9 Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query: 34 GCSNCGKDGS-LRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
GC C K G+ L C RC+ RYCS +CQR+HWKDHKRDC
Sbjct: 1117 GCWACAKSGAPLSACGRCQRARYCSTECQREHWKDHKRDC 1156
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A8H5C6D7_9AGAR (MYND-type domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5C6D7_9AGAR) HSP 1 Score: 58.2 bits (139), Expect = 1.030e-8 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query: 34 GCSNCGKDGS-LRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
GC+ CG++GS LR C RC V+YC DCQ+ HWK HK+DC
Sbjct: 197 GCAGCGREGSGLRRCGRCGKVKYCGADCQKGHWKIHKKDC 236
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: D8LNQ8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNQ8_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8 Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 4 ARMTVAS--GSAGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
A+M AS G C+ CG G C+RCR V YCS++CQRQHWK HK CG
Sbjct: 1321 AKMAAASVAGPPKCAKCGIGGKSLQCTRCRKVSYCSKECQRQHWKIHKAACG 1372
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: UPI0020080B4F (uncharacterized protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020080B4F) HSP 1 Score: 58.2 bits (139), Expect = 1.550e-8 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 34 GCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
GC+ CGK+G+ R CSRC+ VRYCS DCQR WK+HK DC
Sbjct: 266 GCAVCGKEGASR-CSRCQIVRYCSSDCQRADWKNHKPDC 303
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A2P6VG49_9CHLO (Ankyrin n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VG49_9CHLO) HSP 1 Score: 57.4 bits (137), Expect = 1.930e-8 Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query: 31 AGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
A C NCGK G+ R C+ C YCSR+CQR HWK+HK CG
Sbjct: 36 AACFNCGKAGTTRRCTGCLAALYCSRNCQRAHWKEHKGRCG 76
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A8H5C897_9AGAR (MYND-type domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5C897_9AGAR) HSP 1 Score: 57.4 bits (137), Expect = 2.550e-8 Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query: 37 CSNCGK--DGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
C NCGK G LR C+RC +V+YC DCQ+QHWK HK++C
Sbjct: 251 CGNCGKRSGGKLRRCTRCGNVKYCGPDCQKQHWKLHKKNC 290
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A2P6VFU6_9CHLO (Ankyrin n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFU6_9CHLO) HSP 1 Score: 57.4 bits (137), Expect = 2.910e-8 Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query: 31 AGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
A C NCGK G+ R C+ C YCSR+CQR HWK+HK CG
Sbjct: 751 AACFNCGKAGATRRCTGCLAALYCSRNCQRAHWKEHKGRCG 791
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A0C3AGJ9_9AGAM (MYND-type domain-containing protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3AGJ9_9AGAM) HSP 1 Score: 57.4 bits (137), Expect = 2.920e-8 Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query: 34 GCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG 153
GC CGK+G CSRC++ +YCS+ CQ Q WK HK+DC
Sbjct: 1154 GCRACGKEGKTLSCSRCKNAKYCSKQCQVQDWKAHKKDCA 1193
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Match: A0A7S2UNG7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNG7_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.900e-8 Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 37 CSNCGKDGSL-RPCSRCRHVRYCSRDCQRQHWKDHKRDC 150
C+ CG D ++ R CSRCR V YC RDCQR HWKDHKR C
Sbjct: 18 CAACGIDTTMIRGCSRCRTVGYCGRDCQRGHWKDHKRVC 56 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86041.20030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig86041.20030.1 >prot_Ecto-sp13_S_contig86041.20030.1 ID=prot_Ecto-sp13_S_contig86041.20030.1|Name=mRNA_Ecto-sp13_S_contig86041.20030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp MTVASGSAGCSNCGKDGSLRPCSRCRHVRYCSRDCQRQHWKDHKRDCG*back to top mRNA from alignment at Ecto-sp13_S_contig86041:291..446- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig86041.20030.1 ID=mRNA_Ecto-sp13_S_contig86041.20030.1|Name=mRNA_Ecto-sp13_S_contig86041.20030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86041:291..446- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86041:291..446- >mRNA_Ecto-sp13_S_contig86041.20030.1 ID=mRNA_Ecto-sp13_S_contig86041.20030.1|Name=mRNA_Ecto-sp13_S_contig86041.20030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86041:291..446- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |