mRNA_Ecto-sp13_S_contig86023.20026.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86023.20026.1
Unique NamemRNA_Ecto-sp13_S_contig86023.20026.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86023.20026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86023contigEcto-sp13_S_contig86023:313..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size136
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_010210.1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.8290706-CDS-Ecto-sp13_S_contig86023:312..4231681464132.8290706-CDS-Ecto-sp13_S_contig86023:312..423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86023 313..423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.8500595-UTR-Ecto-sp13_S_contig86023:423..4481681464132.8500595-UTR-Ecto-sp13_S_contig86023:423..448Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86023 424..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86023.20026.1prot_Ecto-sp13_S_contig86023.20026.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86023 313..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86023.20026.1

>prot_Ecto-sp13_S_contig86023.20026.1 ID=prot_Ecto-sp13_S_contig86023.20026.1|Name=mRNA_Ecto-sp13_S_contig86023.20026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
ITGSDLILNRLKCYILQRPAGRYSPSSNGRSVANKR*
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mRNA from alignment at Ecto-sp13_S_contig86023:313..448+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86023.20026.1 ID=mRNA_Ecto-sp13_S_contig86023.20026.1|Name=mRNA_Ecto-sp13_S_contig86023.20026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=136bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86023:313..448+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAACCGGATCGGATTTGATATTGAACCGTTTAAAGTGTTACATCCTACA
AAGACCTGCCGGGCGATACTCACCTTCGAGCAACGGCCGTAGCGTTGCCA
ACAAACGGTGAACCATCGGTAAGGATGTCGATGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86023:313..448+

>mRNA_Ecto-sp13_S_contig86023.20026.1 ID=mRNA_Ecto-sp13_S_contig86023.20026.1|Name=mRNA_Ecto-sp13_S_contig86023.20026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86023:313..448+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAACCGGATCGGATTTGATATTGAACCGTTTAAAGTGTTACATCCTACA
AAGACCTGCCGGGCGATACTCACCTTCGAGCAACGGCCGTAGCGTTGCCA
ACAAACGGTGA
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