mRNA_Ecto-sp13_S_contig86006.20025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86006.20025.1
Unique NamemRNA_Ecto-sp13_S_contig86006.20025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86006.20025.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.130e-37
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 VLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 228
            VLDRQKERDS+GDNV YVLARTVR  LQYLAA+EIGA+GQGNQCRRG+CFA AMGMF GKG EGIPRDVVLALLR+
Sbjct:  148 VLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
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BLAST of mRNA_Ecto-sp13_S_contig86006.20025.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.560e-23
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 VLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEG 192
            VLDRQK RDSEGDNVPYVLARTVRSNLQYLAA+EIGATGQGNQCRRG  F +  G    +G+ G
Sbjct:  115 VLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG-MFCSRYGHVLRQGEGG 177
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BLAST of mRNA_Ecto-sp13_S_contig86006.20025.1 vs. uniprot
Match: D7G7F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.750e-19
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:    5 STVRRRGTAKATMCRTCLRARSGVTYSTWRRERLGLLGKETNAGA 139
            STVRRRGTAKATMCRTCLRAR G  Y+TWRR+RLGLLGKETNAGA
Sbjct:    3 STVRRRGTAKATMCRTCLRARLGAIYNTWRRKRLGLLGKETNAGA 47
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BLAST of mRNA_Ecto-sp13_S_contig86006.20025.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.720e-11
Identity = 26/64 (40.62%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:   37 DNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 228
            D+  Y +A+ VR+ + Y  A+++G  G+GNQ + GEC  AA  +F G G +G+P +VV A+L++
Sbjct:   26 DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
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BLAST of mRNA_Ecto-sp13_S_contig86006.20025.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.280e-10
Identity = 27/64 (42.19%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   37 DNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 228
            D+  Y +A+ VR+   Y  A+++G  G+GNQ + GEC  AA  +F G G +G+P +VV A+L+H
Sbjct:  117 DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
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BLAST of mRNA_Ecto-sp13_S_contig86006.20025.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.220e-9
Identity = 28/76 (36.84%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:    1 VLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECFAAAMGMFCGKGKEGIPRDVVLALLRH 228
            VLDRQ   D +     Y LA+ VR+ + Y  + ++   G+GNQC  G C  AA+ +F G+ ++GIP ++V A+ + 
Sbjct:  108 VLDRQMTHDGDPG---YCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCKE 180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86006.20025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE1.130e-3785.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI4.560e-2376.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7F1_ECTSI5.750e-1988.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ8_9PHAE6.720e-1140.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE2.280e-1042.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE4.220e-936.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86006contigEcto-sp13_S_contig86006:339..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size233
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464132.791074-CDS-Ecto-sp13_S_contig86006:338..5691681464132.791074-CDS-Ecto-sp13_S_contig86006:338..569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86006 339..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86006.20025.1prot_Ecto-sp13_S_contig86006.20025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86006 339..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86006.20025.1

>prot_Ecto-sp13_S_contig86006.20025.1 ID=prot_Ecto-sp13_S_contig86006.20025.1|Name=mRNA_Ecto-sp13_S_contig86006.20025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
VLDRQKERDSEGDNVPYVLARTVRSNLQYLAAREIGATGQGNQCRRGECF
AAAMGMFCGKGKEGIPRDVVLALLRH*
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mRNA from alignment at Ecto-sp13_S_contig86006:339..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86006.20025.1 ID=mRNA_Ecto-sp13_S_contig86006.20025.1|Name=mRNA_Ecto-sp13_S_contig86006.20025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86006:339..569+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCGACCGTCAGAAGGAGAGGGACAGCGAAGGCGACAATGTGCCGTA
CGTGCTTGCGCGCACGGTCAGGAGTAACCTACAGTACTTGGCGGCGCGAG
AGATTGGGGCTACTGGGCAAGGAAACCAATGCCGGCGCGGGGAATGTTTT
GCAGCCGCTATGGGCATGTTTTGCGGCAAGGGGAAGGAGGGCATTCCTCG
TGATGTCGTTCTAGCGTTGCTGAGGCACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86006:339..569+

>mRNA_Ecto-sp13_S_contig86006.20025.1 ID=mRNA_Ecto-sp13_S_contig86006.20025.1|Name=mRNA_Ecto-sp13_S_contig86006.20025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86006:339..569+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCGACCGTCAGAAGGAGAGGGACAGCGAAGGCGACAATGTGCCGTA
CGTGCTTGCGCGCACGGTCAGGAGTAACCTACAGTACTTGGCGGCGCGAG
AGATTGGGGCTACTGGGCAAGGAAACCAATGCCGGCGCGGGGAATGTTTT
GCAGCCGCTATGGGCATGTTTTGCGGCAAGGGGAAGGAGGGCATTCCTCG
TGATGTCGTTCTAGCGTTGCTGAGGCACTAG
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