prot_Ecto-sp13_S_contig1241.2001.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1241.2001.1
Unique Nameprot_Ecto-sp13_S_contig1241.2001.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length438
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1241.2001.1 vs. uniprot
Match: D8LEL3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL3_ECTSI)

HSP 1 Score: 478 bits (1230), Expect = 2.180e-165
Identity = 309/340 (90.88%), Postives = 316/340 (92.94%), Query Frame = 0 
Query:   75 MVVDPPSDTSAPKDQRTPITSAPEDFGELAPFVFVGCDHERRAGDRLARYDPGIDVPLPRNHSDVVRTRAAKSAEGRRRVAMYSSEEATRPFSRLNREKTTHLLMAREQRSRREVDKARNASLGDRGIDDTLSQEIGGLNALEQARHPRLQAVPLLSRSASSAGSKQGRSCREMARITGAFGSVEDDDHRAAVVSVQGEALDDAWVALLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALAFREPVPRSGACSLLSLNLAFQR 414
            M VDPPS+ SAPKD RT ITSAPEDFGELAPFVFV CDHERR GDRLARYD GID+PLPRNHSDVVRTRAAKSAEGRRRVA++SSEEATRPFSRLNREKTTHLLMAREQRSRREV+KARNASL DRGIDDTL+QEI GLNALEQARHPRLQAVPLLSRSASSAGSKQGRS REMARIT AFG VEDDDHRAAVV VQGEALDDAW+ALLG       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALA  EPVPRSG CSLLSLNLAFQR
Sbjct:    1 MTVDPPSNPSAPKDPRTSITSAPEDFGELAPFVFVRCDHERRVGDRLARYDQGIDIPLPRNHSDVVRTRAAKSAEGRRRVALHSSEEATRPFSRLNREKTTHLLMAREQRSRREVEKARNASLSDRGIDDTLAQEIRGLNALEQARHPRLQAVPLLSRSASSAGSKQGRSRREMARITDAFGLVEDDDHRAAVVRVQGEALDDAWIALLGSTLENNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGLLKSGRCSLKALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALALWEPVPRSGVCSLLSLNLAFQR 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1241.2001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEL3_ECTSI2.180e-16590.88Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 402..429
e-value: 2.3
score: 14.5
coord: 318..345
e-value: 1.7E-4
score: 30.9
coord: 290..317
e-value: 1.4
score: 16.0
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 194..359
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 272..434
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 320..340
e-value: 0.021
score: 14.8
coord: 289..312
e-value: 0.74
score: 10.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 264..436
e-value: 1.6E-22
score: 81.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1241contigEcto-sp13_S_contig1241:3890..10105 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1241.2001.1mRNA_Ecto-sp13_S_contig1241.2001.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1241 3890..10105 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1241.2001.1 ID=prot_Ecto-sp13_S_contig1241.2001.1|Name=mRNA_Ecto-sp13_S_contig1241.2001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=438bp
SFLTSHPSSLISRRIATEALGNMLAKLQCGVSSIVLGGTPASDNIMHGDR
TNLVETNDLGNSSTPTGTAGASSTMVVDPPSDTSAPKDQRTPITSAPEDF
GELAPFVFVGCDHERRAGDRLARYDPGIDVPLPRNHSDVVRTRAAKSAEG
RRRVAMYSSEEATRPFSRLNREKTTHLLMAREQRSRREVDKARNASLGDR
GIDDTLSQEIGGLNALEQARHPRLQAVPLLSRSASSAGSKQGRSCREMAR
ITGAFGSVEDDDHRAAVVSVQGEALDDAWVALLGSTLENNHKIHTLLLNR
NSIGDRGVALLARSLRINDSIEILSLGGNRVTDEGARSLAGLLKSGRCSL
KALNLAGATPRPASIMQSGSGIQEDLADKCIRAPGAAALALAFREPVPRS
GACSLLSLNLAFQRVWDAGAIALAAALKSPGCHLEVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf