mRNA_Ecto-sp13_S_contig85967.20010.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85967.20010.1
Unique NamemRNA_Ecto-sp13_S_contig85967.20010.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: D7G843_ECTSI (Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G843_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 7.010e-62
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 QRMNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            +RMNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV
Sbjct:  346 ERMNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 449
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A835ZF40_9STRA (Heat shock protein 90 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF40_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.160e-52
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    7 MNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            MNKMKPIWMR+P EV ++EY+EFYKSTF+AWDE  AHTHFSLEGQVEF+ALL++P VLPYELSRNMFD+TSR MRLYVKRVFINDKFEELLPRWLMFLRG+V
Sbjct:  263 MNKMKPIWMRNPAEVNDDEYTEFYKSTFRAWDEPLAHTHFSLEGQVEFKALLYIPGVLPYELSRNMFDDTSRAMRLYVKRVFINDKFEELLPRWLMFLRGLV 364
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A7S2WX76_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX76_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.940e-46
Identity = 75/102 (73.53%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    7 MNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            +NK KPIW+RSP+ V E EY+EFYKSTFKA+DE  AHTHFSLEGQVEF+ALL+VP+V+P+ELSR+MF+E S+ ++LYVKRVFINDKFEEL+PRWL F+RG+V
Sbjct:  294 INKQKPIWLRSPKTVNETEYTEFYKSTFKAYDEPTAHTHFSLEGQVEFKALLYVPNVVPFELSRDMFNENSKAIKLYVKRVFINDKFEELMPRWLTFIRGIV 395
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A7S2SVX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVX7_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.320e-45
Identity = 75/102 (73.53%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    7 MNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            +NK KPIW+RSP+ V E EY+EFYKSTFKA+DE  AHTHFSLEGQVEF+ALL+VP+V+P+ELSR+MF+E S+ ++LYVKRVFINDKFEEL+PRWL F+RG+V
Sbjct:  294 INKQKPIWLRSPKTVNETEYTEFYKSTFKAYDEPTAHTHFSLEGQVEFKALLYVPNVVPFELSRDMFNENSKAIKLYVKRVFINDKFEELMPRWLTFIRGIV 395
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A7S4D4B0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4B0_HETAK)

HSP 1 Score: 159 bits (402), Expect = 2.510e-43
Identity = 73/103 (70.87%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    4 RMNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            R+N  +PIW+RSP+E  + EY+EFYKSTF+ +D+   +THFSLEGQVEF+++L+VPS LP+ELSRNMFDE SR M+LYVKRVFI+DKFEELLPRWLMF+RGVV
Sbjct:  308 RVNTQRPIWLRSPKECTDSEYAEFYKSTFRGYDDPLGYTHFSLEGQVEFKSVLYVPSALPFELSRNMFDEDSRAMKLYVKRVFISDKFEELLPRWLMFVRGVV 410
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A7R9U276_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U276_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.170e-43
Identity = 71/102 (69.61%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    7 MNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            +NK KP+WMR+PREV   EYSEFYKSTF  +++   HTHFS+EGQVEFRALL++P  +P+ELSRN+FD+ S+ +RLYVKRVFINDKFEEL PRWL F+RGVV
Sbjct:   50 VNKQKPLWMRNPREVNTTEYSEFYKSTFYGFEDPLGHTHFSVEGQVEFRALLYIPGTVPFELSRNLFDDKSKPLRLYVKRVFINDKFEELYPRWLTFVRGVV 151
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A4D9D6M5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6M5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 6.760e-42
Identity = 74/104 (71.15%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 QRMNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            +R+N+ KPIW+R PR+V  EEY EFY++TF+ +DE   +THFSLEGQVEF+A+L+VPSVLPYEL R+MFDE SR ++LYVKRVFINDKFEELLPR+L FLRGVV
Sbjct:  324 ERVNQTKPIWLRPPRQVTPEEYKEFYRTTFRMFDEPLNYTHFSLEGQVEFKAVLYVPSVLPYELMRSMFDENSRAIKLYVKRVFINDKFEELLPRYLTFLRGVV 427
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A7S3TKH0_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Alveolata TaxID=33630 RepID=A0A7S3TKH0_9SPIT)

HSP 1 Score: 152 bits (384), Expect = 1.050e-41
Identity = 71/102 (69.61%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:    7 MNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            MNKMKPIW+R+P  V E EYSEFYK+TFKA+DE    THF +EGQ+EFRAL+FVPS +P+EL+R+MF E  R MRLYVKRVFIND+F++L+PRWL F RGVV
Sbjct:  353 MNKMKPIWLRNPDVVNESEYSEFYKTTFKAFDEPLTTTHFKVEGQIEFRALIFVPSTMPFELTRDMFAEGGRAMRLYVKRVFINDRFDDLIPRWLTFARGVV 454
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: A0A7S0MHA4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MHA4_9CRYP)

HSP 1 Score: 154 bits (388), Expect = 1.340e-41
Identity = 71/101 (70.30%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   10 NKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            N  KP+WMR P +V  E+Y EFYKSTFKAWD+    +HFSLEGQVEFRA+LFVPS LP+EL  NMFDE S+NMRLYVKRVFIND F+EL PRWL F++G+V
Sbjct:  298 NTQKPLWMRPPSKVTPEQYEEFYKSTFKAWDKPVTVSHFSLEGQVEFRAMLFVPSQLPFELGANMFDENSKNMRLYVKRVFINDNFQELCPRWLKFVKGIV 398
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BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Match: B8BY36_THAPS (Heat shock protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY36_THAPS)

HSP 1 Score: 153 bits (387), Expect = 3.030e-41
Identity = 71/105 (67.62%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 QRMNKMKPIWMRSPREVKEEEYSEFYKSTFKA-WDEVAAHTHFSLEGQVEFRALLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRGVV 312
            ++MN  KPIW+RSP EV EEEY +FY+S F+A +DE  AHTHFSLEGQ+E +++L++P +LP+ELSR+MFDE SRN+RLYVKRVFINDKFE+++PRWL F+RGVV
Sbjct:  313 EQMNTNKPIWLRSPSEVTEEEYKDFYQSAFRASYDEPMAHTHFSLEGQIECKSILYIPGMLPFELSRDMFDEDSRNIRLYVKRVFINDKFEDIVPRWLKFVRGVV 417
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85967.20010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G843_ECTSI7.010e-6299.04Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZF40_9STRA1.160e-5284.31Heat shock protein 90 n=1 Tax=Tribonema minus TaxI... [more]
A0A7S2WX76_9STRA1.940e-4673.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SVX7_9STRA3.320e-4573.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4D4B0_HETAK2.510e-4370.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U276_9STRA3.170e-4369.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D6M5_9STRA6.760e-4271.15Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3TKH0_9SPIT1.050e-4169.61Hypothetical protein (Fragment) n=2 Tax=Alveolata ... [more]
A0A7S0MHA4_9CRYP1.340e-4170.30Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
B8BY36_THAPS3.030e-4167.62Heat shock protein n=1 Tax=Thalassiosira pseudonan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85967contigEcto-sp13_S_contig85967:105..416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score207.6
Seed ortholog evalue2.7e-51
Seed eggNOG ortholog2880.D7G843
Model size312
KEGG koko:K09487
KEGG Pathwayko04141,ko04151,ko04626,ko04657,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04626,map04657,map04915,map04918,map05200,map05215,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons1
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0326@1,KOG0019@2759
Cds size306
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.764789-CDS-Ecto-sp13_S_contig85967:104..4101681464130.764789-CDS-Ecto-sp13_S_contig85967:104..410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85967 105..410 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.7784615-UTR-Ecto-sp13_S_contig85967:410..4161681464130.7784615-UTR-Ecto-sp13_S_contig85967:410..416Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85967 411..416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85967.20010.1prot_Ecto-sp13_S_contig85967.20010.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85967 105..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85967.20010.1

>prot_Ecto-sp13_S_contig85967.20010.1 ID=prot_Ecto-sp13_S_contig85967.20010.1|Name=mRNA_Ecto-sp13_S_contig85967.20010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MNKMKPIWMRSPREVKEEEYSEFYKSTFKAWDEVAAHTHFSLEGQVEFRA
LLFVPSVLPYELSRNMFDETSRNMRLYVKRVFINDKFEELLPRWLMFLRG
VV
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mRNA from alignment at Ecto-sp13_S_contig85967:105..416-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85967.20010.1 ID=mRNA_Ecto-sp13_S_contig85967.20010.1|Name=mRNA_Ecto-sp13_S_contig85967.20010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85967:105..416- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGCATGAACAAGATGAAGCCCATCTGGATGCGGAGCCCCCGCGAGGT
GAAGGAAGAGGAGTACTCGGAGTTCTACAAGTCGACCTTCAAGGCGTGGG
ACGAGGTGGCGGCCCACACCCACTTCTCGCTCGAAGGCCAGGTCGAGTTC
CGCGCGCTCCTCTTCGTGCCGAGCGTGCTGCCGTACGAGCTGAGCCGCAA
CATGTTCGACGAGACCAGCCGCAACATGCGCCTCTACGTGAAGCGCGTTT
TCATCAACGATAAGTTCGAGGAGCTGCTGCCCAGGTGGCTCATGTTTCTC
CGCGGTGTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85967:105..416-

>mRNA_Ecto-sp13_S_contig85967.20010.1 ID=mRNA_Ecto-sp13_S_contig85967.20010.1|Name=mRNA_Ecto-sp13_S_contig85967.20010.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85967:105..416- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAAGATGAAGCCCATCTGGATGCGGAGCCCCCGCGAGGTGAAGGA
AGAGGAGTACTCGGAGTTCTACAAGTCGACCTTCAAGGCGTGGGACGAGG
TGGCGGCCCACACCCACTTCTCGCTCGAAGGCCAGGTCGAGTTCCGCGCG
CTCCTCTTCGTGCCGAGCGTGCTGCCGTACGAGCTGAGCCGCAACATGTT
CGACGAGACCAGCCGCAACATGCGCCTCTACGTGAAGCGCGTTTTCATCA
ACGATAAGTTCGAGGAGCTGCTGCCCAGGTGGCTCATGTTTCTCCGCGGT
GTGGTG
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