mRNA_Ecto-sp13_S_contig8589.20001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8589.20001.1
Unique NamemRNA_Ecto-sp13_S_contig8589.20001.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: D8LLK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK4_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 1.790e-115
Identity = 192/204 (94.12%), Postives = 197/204 (96.57%), Query Frame = 1 
Query:    1 MQMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTRRSK-----ANSPKGSRGRGTNSSSRRTAGIGGDDDEDFDMSDSGDD 597
            ++MAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFIN+QHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESL+ALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTK RRSK     ANSPKGSRG GTNSSSRRTAGIGGDD+EDFDMSDSGDD
Sbjct:  210 LKMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINNQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLSALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKIRRSKGTASEANSPKGSRGGGTNSSSRRTAGIGGDDEEDFDMSDSGDD 413
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: A0A6H5K333_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K333_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 3.310e-92
Identity = 165/199 (82.91%), Postives = 168/199 (84.42%), Query Frame = 1 
Query:    1 MQMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTRRSKANSPKGSRGRGTNSSSRRTAGIGGDDDEDFDMSDSGDD 597
            MQMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTE                            LHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDL+IGVVSHTLLSTK RRSKANSPKGSRG GTNSSSRRTAGIG DD+EDFDMSDSG+D
Sbjct:  161 MQMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTE----------------------------LHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLQIGVVSHTLLSTKIRRSKANSPKGSRGGGTNSSSRRTAGIGEDDEEDFDMSDSGED 331
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: A0A835YZP1_9STRA (Intra-flagellar transport protein 57-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 9.460e-43
Identity = 92/175 (52.57%), Postives = 124/175 (70.86%), Query Frame = 1 
Query:    1 MQMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEY----VQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTRRSKANSPKGSRGR 513
            +++  +  GKEWR HVEQTK  E  +   +P   TQL++I TEV ++++K+R+KER+INSQ++ L+E+     +Q++ +LKA    HQ  S SV ELT  LA LS+E+ ELKE M  +G+ MSEASPLV++K +LQQIK EIKTFDLRIGVVSHTLL+TK R SK    K   G+
Sbjct:  200 LKLGQATLGKEWRSHVEQTKTLEAGLHTGMPEANTQLSVISTEVADTLDKLRIKERYINSQNEALKEDMQFQALQVNGQLKAAGQAHQACSSSVSELTTKLAELSEEVDELKEAMADRGNKMSEASPLVAMKHSLQQIKDEIKTFDLRIGVVSHTLLATKIRLSKTEKRKAKGGK 374
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: A0A7S3XR66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR66_HETAK)

HSP 1 Score: 150 bits (380), Expect = 3.600e-40
Identity = 81/168 (48.21%), Postives = 116/168 (69.05%), Query Frame = 1 
Query:   10 AASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTRRSKANSPKGSRGR 513
            AA+ AG+EWRGH+EQTK+HE  ++  +P T  QL +I  EV E++EKMR KER+IN+ +  L+ EY ++ D + A E K+Q+ S +V  LT  LA LSD+L +++   D  G +M++ SPLV IK ALQ +KAE +TFD+R+GVV HTLL +K R ++A      +GR
Sbjct:  230 AAAGAGREWRGHIEQTKQHEARVREHMPDTRAQLQVIQAEVAEALEKMRSKERYINTHNAHLQGEYKEVKDRMTAAEAKYQSASENVARLTNELADLSDQLADVRSASDDHGQSMTDTSPLVKIKAALQALKAETRTFDVRLGVVGHTLLQSKLRMNQAQGAASKKGR 397
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: A0A5D6XGF9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGF9_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.640e-36
Identity = 85/187 (45.45%), Postives = 121/187 (64.71%), Query Frame = 1 
Query:   25 GKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTRRSKANSPKGSRGRGTNSSSRRTAGIGGDDDEDFDMSD 585
            GKEW  H+E+T+KHE  I+  LPV   QL +IG ++TE++ +M  KE+ IN+Q++ LR+EY QL D+L+AV  + +  S  V  +T   A ++++L+E K  MD +G  M++ SPLV IK+AL+ + AEIK FDLRIGVVSHTLL  K+R++ A      RG+G        AG     D +FD SD
Sbjct:  237 GKEWHMHIERTRKHETVIKDLLPVANNQLKIIGGQLTETIARMGAKEKLINNQYEHLRQEYQQLKDQLQAVAERCKEGSDKVNVMTNEHAQVTEQLRETKSVMDDRGSKMTDTSPLVQIKEALKTLSAEIKHFDLRIGVVSHTLLQAKSRQASA----AFRGKGK-------AGDAQYQDPEFDQSD 412
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: K3WX06_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX06_GLOUD)

HSP 1 Score: 140 bits (353), Expect = 3.760e-36
Identity = 79/187 (42.25%), Postives = 120/187 (64.17%), Query Frame = 1 
Query:   25 GKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTRRSKANSPKGSRGRGTNSSSRRTAGIGGDDDEDFDMSD 585
            GKEW  H+E+T+KHE  I   LP+   QL +IG ++TE++++M  KE+ IN+Q++ LR+EY QL ++L+ +  + +  S  V  +T   A ++++L+E K  MD +G  M++ SPLV IK+AL+ + +EIK FDLRIGVVSHTLL  K+R++ A             + RR AG G   D ++D SD
Sbjct:  240 GKEWHSHIERTRKHETVINDLLPLANNQLKIIGNQLTETIQRMGTKEKLINNQYEHLRQEYHQLKEKLQVISDRCKEGSDKVNVMTNEHAQITEQLRETKTVMDDRGSKMTDTSPLVQIKEALKTLNSEIKNFDLRIGVVSHTLLQAKSRQASA-------------AFRRKAGDGQYQDPEYDQSD 413
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: A0A2D4CD25_PYTIN (Intraflagellar Transport Protein 57 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD25_PYTIN)

HSP 1 Score: 134 bits (338), Expect = 8.830e-33
Identity = 69/150 (46.00%), Postives = 106/150 (70.67%), Query Frame = 1 
Query:   25 GKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTR 474
            GKEW  H+E+T+KHE  I+  LP + TQL L+GT ++E++E+M  KE+ IN+Q++  R+E+ Q+ D L+A+  + +  S  V  +T   A+++++L+E+K  MD +G  M++ SPLV+IK AL+ + AEIK F+LRIGVV HTLL  K R
Sbjct:  750 GKEWHAHIERTRKHETLIKELLPRSNTQLKLLGTXLSETIERMGAKEKQINNQYEQQRQEFHQIKDRLQAITERCKEESDKVNAMTNEHASITEQLREIKTVMDERGSKMTDTSPLVAIKDALKALNAEIKNFELRIGVVGHTLLQAKAR 899
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: H3HAT8_PHYRM (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3HAT8_PHYRM)

HSP 1 Score: 129 bits (325), Expect = 5.170e-32
Identity = 70/163 (42.94%), Postives = 109/163 (66.87%), Query Frame = 1 
Query:   10 AASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTRRSKANSPK 498
            A +AAGKEW  H+E++++HE  ++A LP    QL L+GT++TE+  +M  KE+ +N+Q++ LR+EY  L ++L+A     +  +  V  +T   A  +++L+E K  MD +G  M++ SPLV IK AL+ + AE+K F+LRIGVVSHTLL  K R++ A S +
Sbjct:  241 AGAAAGKEWHAHIERSREHETVMRALLPRANAQLRLLGTQLTEATGRMGAKEKMLNNQYEHLRQEYTSLKEKLQAATEVSKGGADRVNVMTTEYAETTEQLKETKGVMDERGAKMTDTSPLVHIKDALKTLAAEVKNFELRIGVVSHTLLQAKCRQASAASAR 403
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: A0A1W0A3K6_9STRA (Deoxyribose-phosphate aldolase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3K6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.650e-31
Identity = 71/150 (47.33%), Postives = 103/150 (68.67%), Query Frame = 1 
Query:   25 GKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTR 474
            GKEW  H+EQTKKH+  IQ  L  T+ QL  I T++ E +++M  KE++IN+Q D LR+EY Q+ ++L+AV  + +  +  V  +T     ++++L+E K  MDSKG  M++ SPLV IK ALQ +K EIK F+LRIGVV HTLL +K++
Sbjct:  797 GKEWHTHIEQTKKHDAIIQGNLASTSLQLKAITTQLAEVIDRMGAKEKYINNQFDHLRQEYHQVKEKLQAVSDRCKEGTERVNAMTNQHTDITEQLRETKTVMDSKGSKMTDTSPLVQIKAALQTLKLEIKNFELRIGVVGHTLLQSKSK 946
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BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Match: T0QS21_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QS21_SAPDV)

HSP 1 Score: 127 bits (318), Expect = 4.240e-31
Identity = 70/150 (46.67%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:   25 GKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEKMRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAALSDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSHTLLSTKTR 474
            GKEW  H+EQTKKH+  IQ  L  T  QL  I  ++TE + +M  KE++IN+Q D LR+EY Q+ ++L AV  + +  +  V  +T     ++++L+E K  MDSKG  M++ +PLV IK ALQ +K EIK F+LRIGVV HTLL +K++
Sbjct:  239 GKEWHTHIEQTKKHDATIQDNLASTAAQLKEITKQLTEVIGRMDAKEKYINNQFDHLRQEYHQVKEKLLAVSERCKEGTEKVNGMTNQHTEITEQLRETKTDMDSKGSKMTDTTPLVQIKSALQTLKGEIKNFELRIGVVGHTLLQSKSK 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8589.20001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK4_ECTSI1.790e-11594.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K333_9PHAE3.310e-9282.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZP1_9STRA9.460e-4352.57Intra-flagellar transport protein 57-domain-contai... [more]
A0A7S3XR66_HETAK3.600e-4048.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6XGF9_9STRA2.640e-3645.45Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WX06_GLOUD3.760e-3642.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4CD25_PYTIN8.830e-3346.00Intraflagellar Transport Protein 57 n=1 Tax=Pythiu... [more]
H3HAT8_PHYRM5.170e-3242.94Uncharacterized protein n=20 Tax=Phytophthora TaxI... [more]
A0A1W0A3K6_9STRA2.650e-3147.33Deoxyribose-phosphate aldolase n=1 Tax=Thraustothe... [more]
T0QS21_SAPDV4.240e-3146.67Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8589contigEcto-sp13_S_contig8589:419..3980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score350.9
Seed ortholog evalue3.9e-94
Seed eggNOG ortholog2880.D8LLK4
Preferred nameIFT57
Model size641
KEGG koko:K04638
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001754,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006915,GO:0006919,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007635,GO:0008104,GO:0008150,GO:0008219,GO:0008285,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009987,GO:0010604,GO:0010646,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010970,GO:0012501,GO:0012505,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0019222,GO:0021915,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031323,GO:0031325,GO:0031503,GO:0032006,GO:0032268,GO:0032270,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0036477,GO:0042073,GO:0042127,GO:0042221,GO:0042461,GO:0042462,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0044085,GO:0044093,GO:0044292,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045862,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048592,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0060249,GO:0060255,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0080090,GO:0090596,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902531,GO:1905515,GO:2000116,GO:2001056
Exons6
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG0972@1,KOG0972@2759
Cds size600
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8589.20001.1prot_Ecto-sp13_S_contig8589.20001.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8589 419..3939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.8529623-CDS-Ecto-sp13_S_contig8589:418..5471681464129.8529623-CDS-Ecto-sp13_S_contig8589:418..547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8589 419..547 +
1681464129.8754163-CDS-Ecto-sp13_S_contig8589:1240..13241681464129.8754163-CDS-Ecto-sp13_S_contig8589:1240..1324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8589 1241..1324 +
1681464129.8890808-CDS-Ecto-sp13_S_contig8589:1722..18601681464129.8890808-CDS-Ecto-sp13_S_contig8589:1722..1860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8589 1723..1860 +
1681464129.9008713-CDS-Ecto-sp13_S_contig8589:2603..26571681464129.9008713-CDS-Ecto-sp13_S_contig8589:2603..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8589 2604..2657 +
1681464129.9122849-CDS-Ecto-sp13_S_contig8589:3275..33531681464129.9122849-CDS-Ecto-sp13_S_contig8589:3275..3353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8589 3276..3353 +
1681464129.9232476-CDS-Ecto-sp13_S_contig8589:3822..39391681464129.9232476-CDS-Ecto-sp13_S_contig8589:3822..3939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8589 3823..3939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.9339402-UTR-Ecto-sp13_S_contig8589:3939..39801681464129.9339402-UTR-Ecto-sp13_S_contig8589:3939..3980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8589 3940..3980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8589.20001.1

>prot_Ecto-sp13_S_contig8589.20001.1 ID=prot_Ecto-sp13_S_contig8589.20001.1|Name=mRNA_Ecto-sp13_S_contig8589.20001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MQMAASAAGKEWRGHVEQTKKHEEAIQAALPVTTTQLALIGTEVTESVEK
MRVKERFINSQHDGLREEYVQLHDELKAVELKHQTTSGSVGELTESLAAL
SDELQELKEKMDSKGDAMSEASPLVSIKQALQQIKAEIKTFDLRIGVVSH
TLLSTKTRRSKANSPKGSRGRGTNSSSRRTAGIGGDDDEDFDMSDSGDD*
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mRNA from alignment at Ecto-sp13_S_contig8589:419..3980+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8589.20001.1 ID=mRNA_Ecto-sp13_S_contig8589.20001.1|Name=mRNA_Ecto-sp13_S_contig8589.20001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8589:419..3980+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGATGGCGGCCTCTGCTGCGGGGAAGGAGTGGCGAGGGCACGTCGA
GCAGACCAAGAAGCACGAGGAGGCAATCCAGGCCGCCTTGCCCGTGACCA
CGACACAGCTCGCTCTGATAGGGACCGAGGTAAGGTTACAAGACACGCAA
TGTCTTGCATGCTGCCAGTGTCTCCAACATGCAGCCATCCCTACAAAACG
AATGCTGCGTTGGATACTCGTATATTTATCTGGGCTCATCTTGAAACAAA
TATGCTCGGAAGTAGAGTTGGCCAGTGGTGCTTGGGGTCGTGCTTTGAAG
TCCACACCATTAATATCGAAGTTACCATACGACTTGTTGGCCCCGTGATG
AACGGGCAAGGAGCAACCAGTAACAAGGACGGAGTGTCGTTGAACAATTC
CGTGGCTACAAAAGGGGACCACGTATCTATCCGCTATCACCATACTCAGT
AGCACGAGCTGAGGTGAACGCACCTTCGGCCTTAAGCCCATCTTCCTTGT
CGCTGTTTACATTTATCGTGCTCAAATGAAGCTGTGAAATGTGAAACTCT
ATGTAACCCTGCCTACGTGCTACATGTACACAGTTCTAAGCAGTGGCTGT
TCTCACGTGGGAAGTTGGAAAGTCGTCTTGTATTCCATAAATTTGCGGGA
GAACGGTTTACGGTCGTTCGTCGACCCCCTCGCATAAGGATACCTTGAAG
CTCCCCGGATAAAACCTCTTCACAGCACGCCATGTCTGCGGAGCGTAGAT
AACCTGTGGTGTAACCTATTTCGGGTTCGATTCGCTGCTGGTATGGACCT
GCCAACGTGAAACGCAATTAAGGTGACCGAGAGCGTGGAAAAGATGCGGG
TAAAGGAGCGCTTCATCAACAGCCAGCATGACGGGCTCAGGGAGGAGTAC
GTCCAGGTTGATGTTGTTGTCGCTGTTGGGGTGTACGACGAAATAGTAGT
TGCGGTAGAAACGGTCGTTGCAGTCTTTTCGTCGATATTGTGTGGATGGC
GATAACTGTGTTTGGCGTTGAGTTCTTCGTGTCTTCGGTGCTGTCACAAA
CGATGTTGATCTTTCATTGATGTTCACGACCCCGGTGACCCCTCTTTTGT
CTTTCGTGTGAGTGGTCTTCTGTGTTGTGTACGTGCACTACTTTACCACT
GCCATGTCACCGTAGCTTGTCCGAATGTTTGCCCTGCCTGGAAGGTACGA
TTTTCATCAACATGCCGCACACACCCATTCCTGAATACGTCAACAAAGCC
GCAACTGCTCGAAAAAACTGCACCGGCAACACCGCTGTCTCCCACTTGTG
ATAGCTCCATGACGAGCTCAAGGCCGTGGAGCTGAAGCACCAAACCACGA
GCGGGTCGGTGGGAGAACTTACCGAGTCCCTTGCGGCCTTAAGCGACGAG
CTCCAGGAGCTCAAGGAGAAGATGGACTCCAAGGGGGACGCGGTACGGTC
GACTGAGCATCTCTTGCGCTCGCACACTCCCGTTTCTCTGCAGTACACTC
TGGTGATACCATTGCTACATACCAACCACTCTGTGCTTCTGTGCTCGCTG
TGGTGACTGCACGCTTATGGGCTCTAATATCAGAGGACGGGTGTCAAGCA
ACGCAGATCTTTGAACGGTTTCGCCTCCAGTCTGGATATTTCGATCTTCA
ACCCCCATGTTGTGGTTGGTAGCGTTGCACAACCTCCGGATGAATACTAA
TCTTCAGATCAGTGACCTTACTTCCTTGAAGACATACACATGGTGGTGGG
ATGCAGTTTTCACTTCGTGTGGTGATCTGTCCCAACAGAACATCGTGCCC
CACGTTTCGGGCACCGATTATTGGCCAGGTTTCCCGGATGCTAACACGTC
AGCGACCCGAGTGCGACCTTTGGCCTTGCTTGCGTTTGTCATCCCACTTG
CAATGAGATGCCCTACAATGCATGAAGGGGCGTGTGTGTCTTTCTTTGCG
AGAACGGGTGCACCAAAACTATCGCCACTTCTTCCACGTCAATGGAACGA
TCATTTTCGGGTACGTACTGAGGAACACCCGGGGCAAAACTAACTCTCGA
TCGTTGTCTCCCTCGAGCAAGGCGTGTCAACGACCCTCGTCAGCTAACCC
CAACGGTGTGCCCGCTCGCCTTGCCGTGGCTTGTTGTGCTGTGTGATATG
GCGTCCTGCGTGTGGCCTGGTTGCTATTTGTCAAGATGAGCGAGGCGAGC
CCTTTGGTGAGCATAAAGCAGGCGCTGCAGCAGATCAAGGTGAGGAGGCC
AACGGGACGGGGCACGCACCTTTCGCGCTCAGCACATGGTTGTGAGATCA
ACCCTAATGATGCAGCAGAGCTTGCTGCCGCTGGTGATAAAACAAAAAGG
AGCCCTTCAGGTTCCTCCACCTCTCTTCCGGAGGCAGACGAAACCGTTGA
TCTTCGAAAGCATCGAAAACTCGGGAAACGGAATATGTACGGAGTCGAAA
ATTCCTCGGCTGTAGCTTCATTTAAACCACGAAGAGGTTGTGGCTTTCAC
GAGCACAGCAGCCCACACACAACCCACAGTCCTGCGTCAGTGCCCTTCCG
TACAAGGCGCCGGGGAGCGTTAATCTCCGCGCAAGTTACGCGCCAAACAA
AGTTTTGGTCATCCTGATTGAAAATCTAGACCGAGAAATGCAGCAATATG
CATACGAAGACCCAGAACGAGGTTCGGCGGCATGAAGAATGTAAGAGGAG
AGGGACAGAGAGAGGATAAATGACACCCATGCTCTTCCGTTGTTGTCGAC
GGTGCTGAAACGCCGCGGAGAGCAACTTCGAGTCCGACGTGTCTCACTGA
AGGGTCACCTCCCCCCGCCCCCCCCCCCTATGACTCGCCATCCTCATCGT
GGTGAAGGCGGAGATCAAGACCTTCGACCTGCGCATCGGTGTCGTGAGCC
ACACCCTCCTGTCCACGAAAACACGCAGGAGCAAGGTAAACTCCTCTTCA
ACAAGAAAATAATTGAGCCATTTTCTGTGTTGGTGGTTGGTCGAGAAAGC
GGGAAAGATGGCTGTGGTGGTGGTGGCGGTGGTGGTCGTGGTGGTGGTGT
GGTAGTGGTGGTAGTGGTGGTCGTGGTGTTTCCAGTTCCAAGCGTGTTTC
TATCTTCTTACCAACACCTTCTCCGGAATCCGCACTATTCGCAGGAGACG
GCTTCCGAGGTAATAACACCCTCAGAAAATTCTTCCAGTTTACGAGAGAG
ACTCAAAACAATGGTTGCAGCGATTTCCCGAGGTTGTACGCGTAGATCCT
ACTGTCGCTACGGATGTACGTTCGTGGTTGGCTCAATGCTGATGATAACT
GCTTGCCTTATTGTTAAGCACGGAATTTGAGGCAAATATCTTTAGCGTCT
TGAACGCCCTTCGTTACCAACCGCGTGTCGTGCATGGGTGGTACTACGGT
GCAGGCAAACTCTCCAAAGGGATCGAGAGGCCGTGGCACGAATAGCAGCA
GCAGGAGAACGGCAGGAATCGGCGGAGACGACGACGAAGACTTCGACATG
AGCGATAGCGGCGACGACTGACGATTAGAACAGCAGACTACGTCGGCCAG
GGGGAGGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8589:419..3980+

>mRNA_Ecto-sp13_S_contig8589.20001.1 ID=mRNA_Ecto-sp13_S_contig8589.20001.1|Name=mRNA_Ecto-sp13_S_contig8589.20001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8589:419..3980+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGATGGCGGCCTCTGCTGCGGGGAAGGAGTGGCGAGGGCACGTCGA
GCAGACCAAGAAGCACGAGGAGGCAATCCAGGCCGCCTTGCCCGTGACCA
CGACACAGCTCGCTCTGATAGGGACCGAGGTGACCGAGAGCGTGGAAAAG
ATGCGGGTAAAGGAGCGCTTCATCAACAGCCAGCATGACGGGCTCAGGGA
GGAGTACGTCCAGCTCCATGACGAGCTCAAGGCCGTGGAGCTGAAGCACC
AAACCACGAGCGGGTCGGTGGGAGAACTTACCGAGTCCCTTGCGGCCTTA
AGCGACGAGCTCCAGGAGCTCAAGGAGAAGATGGACTCCAAGGGGGACGC
GATGAGCGAGGCGAGCCCTTTGGTGAGCATAAAGCAGGCGCTGCAGCAGA
TCAAGGCGGAGATCAAGACCTTCGACCTGCGCATCGGTGTCGTGAGCCAC
ACCCTCCTGTCCACGAAAACACGCAGGAGCAAGGCAAACTCTCCAAAGGG
ATCGAGAGGCCGTGGCACGAATAGCAGCAGCAGGAGAACGGCAGGAATCG
GCGGAGACGACGACGAAGACTTCGACATGAGCGATAGCGGCGACGACTGA
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