mRNA_Ecto-sp13_S_contig1241.2000.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: D8LEL4_ECTSI (Udp-n-acetylglucosamine pyrophosphorylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL4_ECTSI) HSP 1 Score: 335 bits (860), Expect = 1.060e-110 Identity = 174/202 (86.14%), Postives = 176/202 (87.13%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGG-RLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGGEGLCEISPLVSYGGEGLEGRAGELSEEPFYIE 603
VGVVVKRGGKPCVVEYSEM+KEACERREGSSNGT RLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADG HGTTLKP ENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSP TAREMISRQARRWA G EGLCEISPLVSYGGEGLEGRAGELSE PF+IE
Sbjct: 335 VGVVVKRGGKPCVVEYSEMEKEACERREGSSNGTXXXXXXXRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGSHGTTLKPAENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPDTAREMISRQARRWAXXXXXXXXXXXXXGGDEGLCEISPLVSYGGEGLEGRAGELSEVPFHIE 536
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A6H5JKZ4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ4_9PHAE) HSP 1 Score: 301 bits (771), Expect = 5.260e-97 Identity = 152/160 (95.00%), Postives = 154/160 (96.25%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAA 480
VGVVVKRGGKPCVVEYSEM+KEACERREGSSNGTSGGG RLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTT+KP ENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSP TAREMISRQARRWAAA AAA
Sbjct: 332 VGVVVKRGGKPCVVEYSEMEKEACERREGSSNGTSGGG--RLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTVKPAENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPDTAREMISRQARRWAAAAVAAA 489
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A7S2YGQ1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGQ1_9STRA) HSP 1 Score: 214 bits (545), Expect = 4.730e-66 Identity = 113/200 (56.50%), Postives = 135/200 (67.50%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGGEGLCEISPLVSYGGEGLEGRAGELSEEPFYI 600
VGVV R G+PCVVEYSE+ +E ER + GRLVFGAGNICNH+++L FL +TVLP M ++YH+A KKIP DG TT+KP NNGIKLE+FIFDVFPLSKN ++E R EFAPVKN PGS +DSP TAR MIS + W A A + EG+CEISPLVSYGGEGLE G+ E P ++
Sbjct: 126 VGVVALRAGEPCVVEYSEITQEMAERTDDQ---------GRLVFGAGNICNHFYTLDFLRNTVLPNMGNLYHIAKKKIPYFDGQ--TTVKPDSNNGIKLETFIFDVFPLSKNFCVWEVERSQEFAPVKNGPGSPSDSPDTARSMISNMCQTWLTAAGATIAK-------EGVCEISPLVSYGGEGLESYQGQTVELPCHL 307
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A7S2MXZ2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXZ2_9STRA) HSP 1 Score: 209 bits (533), Expect = 1.180e-64 Identity = 113/201 (56.22%), Postives = 140/201 (69.65%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGGEGLCEISPLVSYGGEGLEGRA-GELSEEPFYI 600
VG+VV++ GKPC+VEYS+MD E+ + + GRLVFGAGNICNH+++L F+ D V+P M +MYHVAHKKIP D T+KP ENNGIKLE+FIFDVFP S NM + + RE+EFAPVKNAPGSS+DSP TAR MIS ++RW AG T++ GE CE+SPLVSY GEGLE G+ E PF +
Sbjct: 92 VGIVVEKDGKPCIVEYSDMDPSMMEQIDEN---------GRLVFGAGNICNHFYTLDFIVDQVVPNMKNMYHVAHKKIPYYDEETKETVKPTENNGIKLETFIFDVFPFSSNMAVLDVCREEEFAPVKNAPGSSSDSPDTARAMISALSKRWVKD----AGGILTNDDGE--CEVSPLVSYAGEGLEELVKGKEIECPFSL 277
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A7S1ZXT0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZXT0_TRICV) HSP 1 Score: 206 bits (523), Expect = 7.710e-64 Identity = 105/187 (56.15%), Postives = 131/187 (70.05%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGGEGLCEISPLVSYGGEGLE 561
VGVV RGGKPCVVEYS++ +E E + GGRLV+GAGNICNHY++L+F+ D V+P + +MYHVA KKIP D T+KP +NNGIKLESFIFDVFPLS+ M + + +RE+EFAPVKNAPGS +DSP TAR+++S A++W A S+G CEI PL SYGGEGLE
Sbjct: 49 VGVVATRGGKPCVVEYSDLSREMAEMTDQ---------GGRLVYGAGNICNHYYTLSFIRDVVVPNVGNMYHVASKKIPTYDFALQKTVKPTKNNGIKLESFIFDVFPLSQKMAVLDVSREEEFAPVKNAPGSDSDSPDTARKLMSELAKKWLKTAGAMLTGEVDSDG----CEIGPLSSYGGEGLE 222
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A7S4MYZ6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYZ6_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.320e-61 Identity = 110/200 (55.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGGEGLCEISPLVSYGGEGLEGRAGELSEEPFYI 600
VGVV +R GKPCVVEYS++ ++ E + + GGRL FGAGNICNHY++L FL + V+P MADMYHVA KKIP D G +KP +NNGIKLESFIFDVFPLSK M + + R +EFAPVKNAPGS TDSP TAR +S +++W AG S GE LCE+ PL SY GEGLE G+ PF +
Sbjct: 302 VGVVAERDGKPCVVEYSDLSRDMAEMIDPDA-------GGRLRFGAGNICNHYYTLDFLRNEVIPNMADMYHVARKKIPVWDAEAGEVVKPPKNNGIKLESFIFDVFPLSKRMAVLDVERAEEFAPVKNAPGSDTDSPDTARRALSELSQKWMKE----AGAMLASGEGEVLCEVGPLTSYAGEGLEEYKGKEVTCPFSL 490
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A7S4AUG4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AUG4_9STRA) HSP 1 Score: 205 bits (522), Expect = 1.130e-60 Identity = 103/187 (55.08%), Postives = 136/187 (72.73%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGGEGLCEISPLVSYGGEGLE 561
VGVV ++GGKPC+VEYSE+ E E+ +G+ GRLV+GAGNICNH+++L F+ + V+P + +MYH+A KKIP D +T+KP NNGIKLESFIFD+FPLS+ M + +A REDEFAPVKNAPGS++DSP TAR +S+Q+++W AG T + + LCEISP+ SYGGEGLE
Sbjct: 293 VGVVAEKGGKPCIVEYSEITTEMAEQTDGN---------GRLVYGAGNICNHFYTLDFICEKVVPNLGNMYHIARKKIPYYDATTKSTVKPESNNGIKLESFIFDIFPLSERMAVLDALREDEFAPVKNAPGSASDSPDTARAYLSKQSQKWVTE----AGGNLTGDL-DSLCEISPMTSYGGEGLE 465
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A448ZR23_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZR23_9STRA) HSP 1 Score: 196 bits (498), Expect = 7.750e-60 Identity = 102/187 (54.55%), Postives = 131/187 (70.05%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGGEGLCEISPLVSYGGEGLE 561
VGV+ ++GGKPC+VEYSE+ E E+ +G GRLV+GAGNICNH+++L FL D V+P + +MYH+A KKI D +T+K NNGIKLESFIFD+FP S+ M + EA RE+EFAPVKNAPGS++DSP TAR +S+QA++W AG T + E CEISP+ SYGGEGLE
Sbjct: 55 VGVLAEKGGKPCIVEYSEITTEMAEQTDGE---------GRLVYGAGNICNHFYTLDFLCDKVVPNLGNMYHIARKKIXYYDEESKSTVKXEANNGIKLESFIFDIFPXSERMAVLEAQREEEFAPVKNAPGSASDSPDTARVYLSKQAQKWVIE----AGGNLTGDL-ESQCEISPMTSYGGEGLE 227
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A812YMK7_SYMPI (UAP1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812YMK7_SYMPI) HSP 1 Score: 198 bits (503), Expect = 9.920e-60 Identity = 108/207 (52.17%), Postives = 141/207 (68.12%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMD---KEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGR--GATSEGGEGLCEISPLVSYGGEGLEGR-AGELSEEPFYIE 603
VGVV K+GG+P V+EYSE+D K+ C+ GRLVFGAGNICNH+FS+ FL + V+P MA M+H+AHKKIP A G G T+KP NNG+KLE+F+FDVFP+S NM + E RE+EFAPVKNAPG++TDSP +AR M++ R W V A G+ GA + + E+SPL+SY GEGLE R +G+ P ++E
Sbjct: 122 VGVVAKKGGRPSVMEYSELDDARKKQCDES------------GRLVFGAGNICNHFFSVEFLANVVVPNMAAMFHLAHKKIPCA-GEDGKTVKPDSNNGVKLEAFVFDVFPMSSNMAILETRREEEFAPVKNAPGTATDSPDSARAMVNALCRSW---VEQAGGKLEGAKDD----VLEVSPLLSYAGEGLEDRVSGKTLSAPCHLE 308
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Match: A0A7S0XQT5_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0XQT5_9STRA) HSP 1 Score: 202 bits (515), Expect = 2.080e-59 Identity = 102/197 (51.78%), Postives = 133/197 (67.51%), Query Frame = 1
Query: 1 VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICNHYFSLAFLEDTVLPGMADMYHVAHKKIPAADGPHGTTLKPVENNGIKLESFIFDVFPLSKNMVLFEAAREDEFAPVKNAPGSSTDSPYTAREMISRQARRWAAAVAAAAGRGATSEGG------EGLCEISPLVSYGGEGLEGRAG 573
VGV+ ++ GKPC+VEYSE+ E ER + S GRLVFGAGNICNH+++L FL++ V+P + ++YH+A KKIP D TT+KP NNG+KLESFIFD+FPLS+ M + + R+ EFAPVKNAPGS++DSP TAR +S+QA++W T GG + LCEISP+ SYGGEGLE G
Sbjct: 317 VGVLAEKAGKPCIVEYSEITSEMAERTDTS---------GRLVFGAGNICNHFYTLDFLQEKVIPNLGNLYHIARKKIPYYDAESKTTVKPESNNGVKLESFIFDIFPLSEQMGVLDCKRDQEFAPVKNAPGSASDSPDTARAYLSKQAQKWV-----------TEAGGKLTGDLDSLCEISPMTSYGGEGLEELVG 493 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1241.2000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1241.2000.1 >prot_Ecto-sp13_S_contig1241.2000.1 ID=prot_Ecto-sp13_S_contig1241.2000.1|Name=mRNA_Ecto-sp13_S_contig1241.2000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=202bp VGVVVKRGGKPCVVEYSEMDKEACERREGSSNGTSGGGGGRLVFGAGNICback to top mRNA from alignment at Ecto-sp13_S_contig1241:474..1079+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1241.2000.1 ID=mRNA_Ecto-sp13_S_contig1241.2000.1|Name=mRNA_Ecto-sp13_S_contig1241.2000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1241:474..1079+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1241:474..1079+ >mRNA_Ecto-sp13_S_contig1241.2000.1 ID=mRNA_Ecto-sp13_S_contig1241.2000.1|Name=mRNA_Ecto-sp13_S_contig1241.2000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1241:474..1079+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |