mRNA_Ecto-sp13_S_contig85887.20000.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85887.20000.1
Unique NamemRNA_Ecto-sp13_S_contig85887.20000.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 5.650e-25
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVS 153
            DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNK+S
Sbjct:   50 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLS 100          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.550e-14
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVS 153
            DNEI+KLDNFPR  RL++LLL NN +++I +D+G  LPNLSCL+LTNN +S
Sbjct:   50 DNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHIS 100          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: A0A6B2G4A8_MYXSQ (U2 small nuclear ribonucleoprotein A' (Trinotate prediction) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2G4A8_MYXSQ)

HSP 1 Score: 69.7 bits (169), Expect = 3.460e-13
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVSGRCD 165
            DN++KKLD FP  +RL  L++CNNH+S+ISE+LG++LPNL  L+L NN +    D
Sbjct:   51 DNDLKKLDGFPILRRLKLLIVCNNHISRISENLGSSLPNLQRLVLINNNIQEVAD 105          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: A0A0C2M361_THEKT (U2 small nuclear ribonucleoprotein A n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2M361_THEKT)

HSP 1 Score: 68.9 bits (167), Expect = 9.800e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVSGRCD 165
            DN++KKLD FP  K L  L++CNNHVS++++DL   LPNL  L+LTNN +S   D
Sbjct:   51 DNDLKKLDGFPVLKHLKLLMVCNNHVSRVAQDLANFLPNLQRLVLTNNNISELAD 105          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: W2MF23_PHYPR (SAP domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2MF23_PHYPR)

HSP 1 Score: 69.7 bits (169), Expect = 1.050e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVS 153
            DNEIKKL+NFPR +RL  LLL NNHVSKI E+L  A+PN+  L+LT N+++
Sbjct:   50 DNEIKKLENFPRLRRLRMLLLHNNHVSKIQENLAEAIPNMEFLMLTGNRIA 100          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: A0A225WAL2_9STRA (U2 small nuclear ribonucleoprotein A n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WAL2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.000e-12
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVS 153
            DNE+KKL+NFPR +RL  LLL NNHV+KI E+L  A+PNL  L+LT N+++
Sbjct:   50 DNEVKKLENFPRLRRLRMLLLHNNHVAKIQENLAEAIPNLEFLMLTGNRIA 100          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: A0A3F2RWB4_9STRA (SAP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWB4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.690e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVS 153
            DNEIKKL+NFPR +RL  LLL NNHVSKI E+L  A+ NL  L+LT N++S
Sbjct:   50 DNEIKKLENFPRLRRLRMLLLHNNHVSKIQENLAEAIANLEFLMLTGNRIS 100          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: A0A3R7BIC8_9STRA (SAP domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BIC8_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.840e-12
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVSGRCD 165
            DNEIKKL+NFPR KRL  LLL NN V +I ++L  ++PNLS L+LTNN ++   D
Sbjct:   81 DNEIKKLENFPRLKRLRMLLLHNNKVHRIQDNLAESIPNLSVLLLTNNSIANLTD 135          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: W4GJX4_9STRA (SAP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJX4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 6.860e-12
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVSGRCD 165
            DNEIKKL+NFPR KRL  LLL NN V +I ++L  ++PNLS L+LTNN ++   D
Sbjct:   50 DNEIKKLENFPRLKRLRMLLLHNNKVHRIQDNLAESIPNLSVLLLTNNSIANLTD 104          
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Match: G4YQC5_PHYSP (SAP domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YQC5_PHYSP)

HSP 1 Score: 67.4 bits (163), Expect = 6.860e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKVS 153
            DNEIKKL+NFPR +RL  LLL NNHVSKI E+L  A+ NL  L+LT N+++
Sbjct:   50 DNEIKKLENFPRLRRLRMLLLHNNHVSKIQENLADAIANLEFLMLTGNRIA 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85887.20000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC4_ECTSI5.650e-2598.04U2 small nuclear ribonucleoprotein A n=1 Tax=Ectoc... [more]
A0A835ZE59_9STRA2.550e-1464.71Leucine-rich repeat-domain-containing protein n=1 ... [more]
A0A6B2G4A8_MYXSQ3.460e-1354.55U2 small nuclear ribonucleoprotein A' (Trinotate p... [more]
A0A0C2M361_THEKT9.800e-1354.55U2 small nuclear ribonucleoprotein A n=1 Tax=Thelo... [more]
W2MF23_PHYPR1.050e-1262.75SAP domain-containing protein n=10 Tax=Phytophthor... [more]
A0A225WAL2_9STRA2.000e-1260.78U2 small nuclear ribonucleoprotein A n=1 Tax=Phyto... [more]
A0A3F2RWB4_9STRA2.690e-1264.71SAP domain-containing protein n=3 Tax=Phytophthora... [more]
A0A3R7BIC8_9STRA6.840e-1258.18SAP domain-containing protein n=4 Tax=Aphanomyces ... [more]
W4GJX4_9STRA6.860e-1258.18SAP domain-containing protein n=2 Tax=Aphanomyces ... [more]
G4YQC5_PHYSP6.860e-1262.75SAP domain-containing protein n=4 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85887contigEcto-sp13_S_contig85887:413..577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.5
Seed ortholog evalue7.9e-21
Seed eggNOG ortholog2880.D8LSC4
Model size165
KEGG koko:K11092
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
Cds size165
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.8113778-CDS-Ecto-sp13_S_contig85887:412..5771681464129.8113778-CDS-Ecto-sp13_S_contig85887:412..577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85887 413..577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85887.20000.1prot_Ecto-sp13_S_contig85887.20000.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85887 413..577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85887.20000.1

>prot_Ecto-sp13_S_contig85887.20000.1 ID=prot_Ecto-sp13_S_contig85887.20000.1|Name=mRNA_Ecto-sp13_S_contig85887.20000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
DNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKV
SGRCD
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mRNA from alignment at Ecto-sp13_S_contig85887:413..577-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85887.20000.1 ID=mRNA_Ecto-sp13_S_contig85887.20000.1|Name=mRNA_Ecto-sp13_S_contig85887.20000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85887:413..577- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAACGAGATCAAGAAGCTAGACAACTTCCCCCGGTACAAGCGCCTGTC GTCCCTCCTCCTCTGCAACAACCACGTCTCCAAGATTTCGGAAGATCTCG GCACTGCTTTGCCGAACCTCTCCTGCCTGATACTCACCAATAACAAGGTG AGCGGTAGATGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85887:413..577-

>mRNA_Ecto-sp13_S_contig85887.20000.1 ID=mRNA_Ecto-sp13_S_contig85887.20000.1|Name=mRNA_Ecto-sp13_S_contig85887.20000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85887:413..577- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAACGAGATCAAGAAGCTAGACAACTTCCCCCGGTACAAGCGCCTGTC
GTCCCTCCTCCTCTGCAACAACCACGTCTCCAAGATTTCGGAAGATCTCG
GCACTGCTTTGCCGAACCTCTCCTGCCTGATACTCACCAATAACAAGGTG
AGCGGTAGATGTGAC
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