mRNA_Ecto-sp13_S_contig85824.19993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85824.19993.1
Unique NamemRNA_Ecto-sp13_S_contig85824.19993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5KKY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY6_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.020e-40
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEK 234
            AL W VKKLRVY YGIPFVVHTDHQPLT+YLSLSEKKPRVH MCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATE+
Sbjct: 1335 ALFWVVKKLRVYSYGIPFVVHTDHQPLTAYLSLSEKKPRVHGMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATER 1412          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5KPU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPU9_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.580e-40
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEK 234
            ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKK RVHRMCDFLSSYQFSLRYKKGNDNQ ADML RLPQ AT+K
Sbjct:  133 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKLRVHRMCDFLSSYQFSLRYKKGNDNQAADMLFRLPQSATDK 210          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.080e-31
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEKD 237
            ALVWA++KLRVYLYGIPF   TDHQPL S++S+ EKKPRV RMCDFLS+Y F+L Y+KG +NQVAD LSRLPQP T  D
Sbjct:  426 ALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQRMCDFLSAYSFTLSYRKGKENQVADALSRLPQPPTAAD 504          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5KJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.200e-31
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEKD 237
            ALVWA++KLRVYLYGIPF   TDHQPL S++S+ EKKPRV  MCDFL++Y F+L Y+KG DNQVAD LSRLPQP T  D
Sbjct:  277 ALVWAIRKLRVYLYGIPFEAFTDHQPLLSFISMGEKKPRVQHMCDFLTAYSFTLSYRKGKDNQVADALSRLPQPPTADD 355          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5JJN6_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.830e-21
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEKD 237
            A+VWA+KK R   YGIPF V++DHQPL +  SL+EK  RV R  DFLS+Y + L+Y+ G +N  AD++SRLP PAT++D
Sbjct:  176 AIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKED 254          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.770e-21
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEKD 237
            A+VWA+KK R   YGIPF V++DHQPL +  SL+EK  RV R  DFLS+Y + L+Y+ G +N  AD++SRLP PAT++D
Sbjct:  176 AIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKED 254          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.490e-20
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEKD 237
            A+VWA+K+ R   YGIPF V++DHQPL +  SL+EK  RV R  DFLS+Y + L+Y+ G +N  AD++SRLP PAT++D
Sbjct:  176 AIVWAIKQNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKED 254          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5K8H1_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.850e-19
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQV 192
            ALVWA++KLR  LYGIPF   TDH+PL S+ S+ EKKPRV RM DFLS+Y F+L Y+KG DN++
Sbjct:  398 ALVWAIRKLRDCLYGIPFEAFTDHKPLLSFFSMGEKKPRVQRMGDFLSAYSFTLSYRKGKDNRM 461          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5K4J2_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.270e-19
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEKD 237
            A+VWA+KK R   YGIPF V++DHQPL +  SL+EK  RV R  D LS+    L+Y+ G DN  AD++SRLP PAT++D
Sbjct:   83 AIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSLAEKNNRVQRWYDCLSACTNKLKYRPGRDNANADLMSRLPLPATKED 161          
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Match: A0A6H5KXJ0_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.020e-15
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 LVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSYQFSLRYKKGNDNQVADMLSRLPQPATEKD 237
            +VWA+K+LR YL+   FV+++DH+ L S   + E   RV R  +FLS++ ++L+Y+KG+ N  AD LSR+P PA + D
Sbjct:   64 IVWAIKRLRGYLWSTKFVIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFLSRMPLPAQDTD 141          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85824.19993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKY6_9PHAE1.020e-4092.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPU9_9PHAE2.580e-4093.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L269_9PHAE2.080e-3172.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH5_9PHAE7.200e-3170.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJN6_9PHAE4.830e-2155.70RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5KAM4_9PHAE6.770e-2155.70RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWR4_9PHAE2.490e-2054.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K8H1_9PHAE1.850e-1964.06RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4J2_9PHAE3.270e-1954.43RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXJ0_9PHAE1.020e-1544.87RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85824contigEcto-sp13_S_contig85824:336..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start0
Seed ortholog score73.6
Seed ortholog evalue4.9e-11
Seed eggNOG ortholog7070.TC006868-PA
Model size243
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.K02A2.6-like
EggNOG OGs38F42@33154,3BA5H@33208,3CWAK@33213,3SIRK@50557,41WI3@6656,COG2801@1,KOG0017@2759
Cds size243
COG Functional cat.O
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.3275535-CDS-Ecto-sp13_S_contig85824:335..5781681464129.3275535-CDS-Ecto-sp13_S_contig85824:335..578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85824 336..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85824.19993.1prot_Ecto-sp13_S_contig85824.19993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85824 336..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85824.19993.1

>prot_Ecto-sp13_S_contig85824.19993.1 ID=prot_Ecto-sp13_S_contig85824.19993.1|Name=mRNA_Ecto-sp13_S_contig85824.19993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
ALVWAVKKLRVYLYGIPFVVHTDHQPLTSYLSLSEKKPRVHRMCDFLSSY
QFSLRYKKGNDNQVADMLSRLPQPATEKDVS
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mRNA from alignment at Ecto-sp13_S_contig85824:336..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85824.19993.1 ID=mRNA_Ecto-sp13_S_contig85824.19993.1|Name=mRNA_Ecto-sp13_S_contig85824.19993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85824:336..578- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTGGTTTGGGCTGTAAAAAAGCTCCGAGTGTATTTGTACGGTATTCC CTTCGTGGTGCATACGGACCACCAACCGTTGACTAGCTATCTGTCTTTGA GCGAAAAGAAGCCCCGAGTGCATAGAATGTGTGACTTCCTCAGCAGCTAT CAGTTTTCCTTGCGCTACAAAAAGGGGAACGATAATCAGGTAGCTGACAT GCTTTCTCGGTTGCCGCAACCTGCGACCGAAAAGGATGTTTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85824:336..578-

>mRNA_Ecto-sp13_S_contig85824.19993.1 ID=mRNA_Ecto-sp13_S_contig85824.19993.1|Name=mRNA_Ecto-sp13_S_contig85824.19993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85824:336..578- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTGGTTTGGGCTGTAAAAAAGCTCCGAGTGTATTTGTACGGTATTCC
CTTCGTGGTGCATACGGACCACCAACCGTTGACTAGCTATCTGTCTTTGA
GCGAAAAGAAGCCCCGAGTGCATAGAATGTGTGACTTCCTCAGCAGCTAT
CAGTTTTCCTTGCGCTACAAAAAGGGGAACGATAATCAGGTAGCTGACAT
GCTTTCTCGGTTGCCGCAACCTGCGACCGAAAAGGATGTTTCG
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